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<?xml version="1.0" standalone="no"?>
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<!DOCTYPE entity PUBLIC "-//UC Berkeley//DTD MoML 1//EN"
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"http://ptolemy.eecs.berkeley.edu/xml/dtd/MoML_1.dtd">
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<entity name="full-garp" class="ptolemy.actor.TypedCompositeActor">
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<property name="_createdBy" class="ptolemy.kernel.attributes.VersionAttribute" value="3.0.2">
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</property>
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<property name="_windowProperties" class="ptolemy.actor.gui.WindowPropertiesAttribute" value="{bounds={0, 22, 1024, 742}}">
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</property>
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<property name="_vergilSize" class="ptolemy.actor.gui.SizeAttribute" value="[813, 636]">
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</property>
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<property name="annotation2" class="ptolemy.kernel.util.Attribute">
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<property name="_hideName" class="ptolemy.kernel.util.SingletonAttribute">
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</property>
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<property name="_iconDescription" class="ptolemy.kernel.util.SingletonConfigurableAttribute">
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<configure><svg><text x="20" y="20" style="font-size:14; font-family:SansSerif; fill:blue">user chooses the grid scale </text></svg></configure>
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</property>
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<property name="_smallIconDescription" class="ptolemy.kernel.util.SingletonConfigurableAttribute">
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<configure>
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<svg>
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<text x="20" style="font-size:14; font-family:SansSerif; fill:blue" y="20">-A-</text>
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</svg>
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</configure>
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</property>
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<property name="_controllerFactory" class="ptolemy.vergil.basic.NodeControllerFactory">
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</property>
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<property name="_editorFactory" class="ptolemy.vergil.toolbox.AnnotationEditorFactory">
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</property>
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<property name="_location" class="ptolemy.kernel.util.Location" value="190.0, -175.0">
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</property>
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</property>
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<property name="annotation" class="ptolemy.kernel.util.Attribute">
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<property name="_hideName" class="ptolemy.kernel.util.SingletonAttribute">
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</property>
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<property name="_iconDescription" class="ptolemy.kernel.util.SingletonConfigurableAttribute">
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<configure><svg><text x="20" y="20" style="font-size:14; font-family:SansSerif; fill:blue">select the species which
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have adequate sample sizes</text></svg></configure>
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</property>
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<property name="_smallIconDescription" class="ptolemy.kernel.util.SingletonConfigurableAttribute">
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<configure>
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<svg>
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<text x="20" style="font-size:14; font-family:SansSerif; fill:blue" y="20">-A-</text>
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</svg>
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</configure>
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</property>
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<property name="_controllerFactory" class="ptolemy.vergil.basic.NodeControllerFactory">
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</property>
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<property name="_editorFactory" class="ptolemy.vergil.toolbox.AnnotationEditorFactory">
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</property>
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<property name="_location" class="ptolemy.kernel.util.Location" value="390.0, -300.0">
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</property>
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</property>
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<property name="annotation3" class="ptolemy.kernel.util.Attribute">
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<property name="_hideName" class="ptolemy.kernel.util.SingletonAttribute">
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</property>
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<property name="_iconDescription" class="ptolemy.kernel.util.SingletonConfigurableAttribute">
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<configure><svg><text x="20" y="20" style="font-size:14; font-family:SansSerif; fill:blue">scalingMetric is median,
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quartile or random</text></svg></configure>
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</property>
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<property name="_smallIconDescription" class="ptolemy.kernel.util.SingletonConfigurableAttribute">
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<configure>
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<svg>
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<text x="20" style="font-size:14; font-family:SansSerif; fill:blue" y="20">-A-</text>
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</svg>
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</configure>
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</property>
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<property name="_controllerFactory" class="ptolemy.vergil.basic.NodeControllerFactory">
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</property>
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<property name="_editorFactory" class="ptolemy.vergil.toolbox.AnnotationEditorFactory">
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</property>
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<property name="_location" class="ptolemy.kernel.util.Location" value="530.0, -135.0">
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</property>
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</property>
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<property name="annotation4" class="ptolemy.kernel.util.Attribute">
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<property name="_hideName" class="ptolemy.kernel.util.SingletonAttribute">
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</property>
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<property name="_iconDescription" class="ptolemy.kernel.util.SingletonConfigurableAttribute">
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<configure><svg><text x="20" y="20" style="font-size:14; font-family:SansSerif; fill:blue">for each species:
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clipping generates min conv. poly
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around occurance pts, then buffers
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by n times the area of the poly.
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then clip the envlayers to the poly</text></svg></configure>
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</property>
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<property name="_smallIconDescription" class="ptolemy.kernel.util.SingletonConfigurableAttribute">
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<configure>
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<svg>
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<text x="20" style="font-size:14; font-family:SansSerif; fill:blue" y="20">-A-</text>
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</svg>
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</configure>
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</property>
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<property name="_controllerFactory" class="ptolemy.vergil.basic.NodeControllerFactory">
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</property>
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<property name="_editorFactory" class="ptolemy.vergil.toolbox.AnnotationEditorFactory">
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</property>
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<property name="_location" class="ptolemy.kernel.util.Location" value="610.0, -435.0">
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</property>
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</property>
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<property name="annotation5" class="ptolemy.kernel.util.Attribute">
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<property name="_hideName" class="ptolemy.kernel.util.SingletonAttribute">
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</property>
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<property name="_iconDescription" class="ptolemy.kernel.util.SingletonConfigurableAttribute">
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<configure><svg><text x="20" y="20" style="font-size:14; font-family:SansSerif; fill:blue">DiGIR returns all species occurance</text></svg></configure>
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</property>
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<property name="_smallIconDescription" class="ptolemy.kernel.util.SingletonConfigurableAttribute">
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<configure>
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<svg>
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<text x="20" style="font-size:14; font-family:SansSerif; fill:blue" y="20">-A-</text>
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</svg>
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</configure>
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</property>
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<property name="_controllerFactory" class="ptolemy.vergil.basic.NodeControllerFactory">
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</property>
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<property name="_editorFactory" class="ptolemy.vergil.toolbox.AnnotationEditorFactory">
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</property>
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<property name="_location" class="ptolemy.kernel.util.Location" value="205.0, -430.0">
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</property>
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</property>
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<property name="annotation6" class="ptolemy.kernel.util.Attribute">
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<property name="_hideName" class="ptolemy.kernel.util.SingletonAttribute">
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</property>
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<property name="_iconDescription" class="ptolemy.kernel.util.SingletonConfigurableAttribute">
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<configure><svg><text x="20" y="20" style="font-size:14; font-family:SansSerif; fill:blue">we need to iterate each
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species</text></svg></configure>
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</property>
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<property name="_smallIconDescription" class="ptolemy.kernel.util.SingletonConfigurableAttribute">
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<configure>
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<svg>
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<text x="20" style="font-size:14; font-family:SansSerif; fill:blue" y="20">-A-</text>
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</svg>
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</configure>
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</property>
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<property name="_controllerFactory" class="ptolemy.vergil.basic.NodeControllerFactory">
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</property>
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<property name="_editorFactory" class="ptolemy.vergil.toolbox.AnnotationEditorFactory">
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</property>
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<property name="_location" class="ptolemy.kernel.util.Location" value="335.0, -355.0">
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</property>
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</property>
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<property name="annotation7" class="ptolemy.kernel.util.Attribute">
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<property name="_hideName" class="ptolemy.kernel.util.SingletonAttribute">
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</property>
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<property name="_iconDescription" class="ptolemy.kernel.util.SingletonConfigurableAttribute">
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<configure><svg><text x="20" y="20" style="font-size:14; font-family:SansSerif; fill:blue">the structure of the dataset is that each row (xml tagged) is a dv followed by ivs.
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all values must be a single byte
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there is a specific xml format of input (internal representation)
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DV=(0|1) default with ENM | (0-254) (255 indicates a value > 254)
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IVs=1-254</text></svg></configure>
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</property>
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<property name="_smallIconDescription" class="ptolemy.kernel.util.SingletonConfigurableAttribute">
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<configure>
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<svg>
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<text x="20" style="font-size:14; font-family:SansSerif; fill:blue" y="20">-A-</text>
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</svg>
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</configure>
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</property>
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<property name="_controllerFactory" class="ptolemy.vergil.basic.NodeControllerFactory">
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</property>
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<property name="_editorFactory" class="ptolemy.vergil.toolbox.AnnotationEditorFactory">
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</property>
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<property name="_location" class="ptolemy.kernel.util.Location" value="895.0, -345.0">
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</property>
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</property>
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<property name="annotation8" class="ptolemy.kernel.util.Attribute">
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<property name="_hideName" class="ptolemy.kernel.util.SingletonAttribute">
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</property>
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<property name="_iconDescription" class="ptolemy.kernel.util.SingletonConfigurableAttribute">
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<configure><svg><text x="20" y="20" style="font-size:14; font-family:SansSerif; fill:blue">1-254</text></svg></configure>
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</property>
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<property name="_smallIconDescription" class="ptolemy.kernel.util.SingletonConfigurableAttribute">
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<configure>
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<svg>
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<text x="20" style="font-size:14; font-family:SansSerif; fill:blue" y="20">-A-</text>
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</svg>
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</configure>
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</property>
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<property name="_controllerFactory" class="ptolemy.vergil.basic.NodeControllerFactory">
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</property>
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<property name="_editorFactory" class="ptolemy.vergil.toolbox.AnnotationEditorFactory">
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</property>
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<property name="_location" class="ptolemy.kernel.util.Location" value="420.0, -535.0">
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</property>
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</property>
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<property name="annotation9" class="ptolemy.kernel.util.Attribute">
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<property name="_hideName" class="ptolemy.kernel.util.SingletonAttribute">
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</property>
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<property name="_iconDescription" class="ptolemy.kernel.util.SingletonConfigurableAttribute">
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<configure><svg><text x="20" y="20" style="font-size:14; font-family:SansSerif; fill:blue">could be repurposed as general binning util</text></svg></configure>
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</property>
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<property name="_smallIconDescription" class="ptolemy.kernel.util.SingletonConfigurableAttribute">
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<configure>
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<svg>
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<text x="20" style="font-size:14; font-family:SansSerif; fill:blue" y="20">-A-</text>
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</svg>
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</configure>
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</property>
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<property name="_controllerFactory" class="ptolemy.vergil.basic.NodeControllerFactory">
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</property>
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<property name="_editorFactory" class="ptolemy.vergil.toolbox.AnnotationEditorFactory">
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</property>
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<property name="_location" class="ptolemy.kernel.util.Location" value="370.0, -555.0">
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</property>
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</property>
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<property name="annotation10" class="ptolemy.kernel.util.Attribute">
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<property name="_hideName" class="ptolemy.kernel.util.SingletonAttribute">
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</property>
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<property name="_iconDescription" class="ptolemy.kernel.util.SingletonConfigurableAttribute">
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<configure><svg><text x="20" y="20" style="font-size:14; font-family:SansSerif; fill:blue">metadata for rescaling: this can be applied
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to an envlayer and then parameterize input
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west 2 of garpPrediction actor</text></svg></configure>
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</property>
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<property name="_smallIconDescription" class="ptolemy.kernel.util.SingletonConfigurableAttribute">
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<configure>
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<svg>
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<text x="20" style="font-size:14; font-family:SansSerif; fill:blue" y="20">-A-</text>
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</svg>
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</configure>
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</property>
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<property name="_controllerFactory" class="ptolemy.vergil.basic.NodeControllerFactory">
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</property>
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<property name="_editorFactory" class="ptolemy.vergil.toolbox.AnnotationEditorFactory">
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</property>
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<property name="_location" class="ptolemy.kernel.util.Location" value="830.0, -600.0">
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</property>
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</property>
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<port name="envLayers" class="ptolemy.actor.TypedIOPort">
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<property name="input"/>
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<property name="multiport"/>
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<property name="_location" class="ptolemy.kernel.util.Location" value="-25.0, -310.0">
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</property>
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</port>
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<port name="DiGIR Query" class="ptolemy.actor.TypedIOPort">
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<property name="input"/>
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<property name="_location" class="ptolemy.kernel.util.Location" value="-25.0, -365.0">
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</property>
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</port>
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<port name="listOfClimateChangeEnvLayers" class="ptolemy.actor.TypedIOPort">
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<property name="input"/>
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<property name="_location" class="ptolemy.kernel.util.Location" value="-35.0, -130.0">
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</property>
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</port>
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<port name="output" class="ptolemy.actor.TypedIOPort">
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<property name="output"/>
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<property name="_location" class="ptolemy.kernel.util.Location" value="1450.0, 315.0">
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</property>
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</port>
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<port name="classifiedMap" class="ptolemy.actor.TypedIOPort">
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<property name="input"/>
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<property name="_location" class="ptolemy.kernel.util.Location" value="-30.0, -60.0">
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</property>
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</port>
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250
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<entity name="envLayerMDExtraction" class="org.ecoinformatics.seek.workflow.envLayerMDExtraction">
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<property name="envLayerMDExtraction" class="org.ecoinformatics.seek.workflow.envLayerMDExtraction$BlankActorPaneFactory">
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</property>
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<property name="_location" class="ptolemy.kernel.util.Location" value="165.0, -205.0">
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254
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</property>
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255
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<port name="envLayer" class="ptolemy.actor.TypedIOPort">
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<property name="input"/>
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</port>
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<port name="extractedInfo" class="ptolemy.actor.TypedIOPort">
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<property name="output"/>
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<property name="_cardinal" class="ptolemy.kernel.util.StringAttribute" value="EAST">
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</property>
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</port>
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</entity>
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<entity name="GetUserInput" class="ptolemy.actor.TypedCompositeActor">
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<property name="_location" class="ptolemy.kernel.util.Location" value="300.0, -205.0">
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</property>
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<property name="annotation" class="ptolemy.kernel.util.Attribute">
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<property name="_hideName" class="ptolemy.kernel.util.SingletonAttribute">
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</property>
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<property name="_iconDescription" class="ptolemy.kernel.util.SingletonConfigurableAttribute">
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<configure><svg><text x="20" y="20" style="font-size:14; font-family:SansSerif; fill:blue">select from the following:
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272
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-medians (systematic)
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-quartiles (systematic)
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-quartiles (random)
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275
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-infinite (random)
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276
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-manual</text></svg></configure>
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</property>
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<property name="_smallIconDescription" class="ptolemy.kernel.util.SingletonConfigurableAttribute">
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<configure>
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<svg>
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<text x="20" style="font-size:14; font-family:SansSerif; fill:blue" y="20">-A-</text>
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282
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</svg>
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</configure>
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</property>
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<property name="_controllerFactory" class="ptolemy.vergil.basic.NodeControllerFactory">
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</property>
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287
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<property name="_editorFactory" class="ptolemy.vergil.toolbox.AnnotationEditorFactory">
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</property>
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<property name="_location" class="ptolemy.kernel.util.Location" value="140.0, 250.0">
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</property>
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</property>
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292
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<property name="annotation2" class="ptolemy.kernel.util.Attribute">
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<property name="_hideName" class="ptolemy.kernel.util.SingletonAttribute">
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</property>
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<property name="_iconDescription" class="ptolemy.kernel.util.SingletonConfigurableAttribute">
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296
|
<configure><svg><text x="20" y="20" style="font-size:14; font-family:SansSerif; fill:blue">the env layer MD determines the allowed vals of scaleValue</text></svg></configure>
|
|
297
|
</property>
|
|
298
|
<property name="_smallIconDescription" class="ptolemy.kernel.util.SingletonConfigurableAttribute">
|
|
299
|
<configure>
|
|
300
|
<svg>
|
|
301
|
<text x="20" style="font-size:14; font-family:SansSerif; fill:blue" y="20">-A-</text>
|
|
302
|
</svg>
|
|
303
|
</configure>
|
|
304
|
</property>
|
|
305
|
<property name="_controllerFactory" class="ptolemy.vergil.basic.NodeControllerFactory">
|
|
306
|
</property>
|
|
307
|
<property name="_editorFactory" class="ptolemy.vergil.toolbox.AnnotationEditorFactory">
|
|
308
|
</property>
|
|
309
|
<property name="_location" class="ptolemy.kernel.util.Location" value="-10.0, 80.0">
|
|
310
|
</property>
|
|
311
|
</property>
|
|
312
|
<port name="envlayerMD" class="ptolemy.actor.TypedIOPort">
|
|
313
|
<property name="input"/>
|
|
314
|
<property name="_location" class="ptolemy.kernel.util.Location" value="25.0, 135.0">
|
|
315
|
</property>
|
|
316
|
</port>
|
|
317
|
<port name="scaleValue" class="ptolemy.actor.TypedIOPort">
|
|
318
|
<property name="output"/>
|
|
319
|
<property name="_location" class="ptolemy.kernel.util.Location" value="335.0, 145.0">
|
|
320
|
</property>
|
|
321
|
</port>
|
|
322
|
<port name="minSampleSizeThreshold" class="ptolemy.actor.TypedIOPort">
|
|
323
|
<property name="output"/>
|
|
324
|
<property name="_location" class="ptolemy.kernel.util.Location" value="335.0, 205.0">
|
|
325
|
</property>
|
|
326
|
</port>
|
|
327
|
<port name="sub sample method" class="ptolemy.actor.TypedIOPort">
|
|
328
|
<property name="output"/>
|
|
329
|
<property name="_location" class="ptolemy.kernel.util.Location" value="335.0, 285.0">
|
|
330
|
</property>
|
|
331
|
</port>
|
|
332
|
<port name="number of garp replicates" class="ptolemy.actor.TypedIOPort">
|
|
333
|
<property name="output"/>
|
|
334
|
<property name="_location" class="ptolemy.kernel.util.Location" value="340.0, 350.0">
|
|
335
|
</property>
|
|
336
|
</port>
|
|
337
|
</entity>
|
|
338
|
<entity name="species selection" class="ptolemy.actor.TypedCompositeActor">
|
|
339
|
<property name="_location" class="ptolemy.kernel.util.Location" value="485.0, -215.0">
|
|
340
|
</property>
|
|
341
|
<property name="annotation3" class="ptolemy.kernel.util.Attribute">
|
|
342
|
<property name="_hideName" class="ptolemy.kernel.util.SingletonAttribute">
|
|
343
|
</property>
|
|
344
|
<property name="_iconDescription" class="ptolemy.kernel.util.SingletonConfigurableAttribute">
|
|
345
|
<configure><svg><text x="20" y="20" style="font-size:14; font-family:SansSerif; fill:blue">if the species occ count >= threshold
|
|
346
|
then continue
|
|
347
|
else
|
|
348
|
return</text></svg></configure>
|
|
349
|
</property>
|
|
350
|
<property name="_smallIconDescription" class="ptolemy.kernel.util.SingletonConfigurableAttribute">
|
|
351
|
<configure>
|
|
352
|
<svg>
|
|
353
|
<text x="20" style="font-size:14; font-family:SansSerif; fill:blue" y="20">-A-</text>
|
|
354
|
</svg>
|
|
355
|
</configure>
|
|
356
|
</property>
|
|
357
|
<property name="_controllerFactory" class="ptolemy.vergil.basic.NodeControllerFactory">
|
|
358
|
</property>
|
|
359
|
<property name="_editorFactory" class="ptolemy.vergil.toolbox.AnnotationEditorFactory">
|
|
360
|
</property>
|
|
361
|
<property name="_location" class="ptolemy.kernel.util.Location" value="205.6202850341797, 212.14403533935547">
|
|
362
|
</property>
|
|
363
|
</property>
|
|
364
|
<property name="_windowProperties" class="ptolemy.actor.gui.WindowPropertiesAttribute" value="{bounds={106, 131, 1024, 742}}">
|
|
365
|
</property>
|
|
366
|
<property name="_vergilSize" class="ptolemy.actor.gui.SizeAttribute" value="[813, 636]">
|
|
367
|
</property>
|
|
368
|
<port name="DiGIR Single Species result" class="ptolemy.actor.TypedIOPort">
|
|
369
|
<property name="input"/>
|
|
370
|
<property name="_location" class="ptolemy.kernel.util.Location" value="20.0, 70.0">
|
|
371
|
</property>
|
|
372
|
</port>
|
|
373
|
<port name="scalevalue" class="ptolemy.actor.TypedIOPort">
|
|
374
|
<property name="input"/>
|
|
375
|
<property name="_location" class="ptolemy.kernel.util.Location" value="20.0, 150.0">
|
|
376
|
</property>
|
|
377
|
</port>
|
|
378
|
<port name="threshold" class="ptolemy.actor.TypedIOPort">
|
|
379
|
<property name="input"/>
|
|
380
|
<property name="_location" class="ptolemy.kernel.util.Location" value="20.0, 200.0">
|
|
381
|
</property>
|
|
382
|
</port>
|
|
383
|
<port name="good species" class="ptolemy.actor.TypedIOPort">
|
|
384
|
<property name="output"/>
|
|
385
|
<property name="multiport"/>
|
|
386
|
<property name="_location" class="ptolemy.kernel.util.Location" value="445.0, 190.0">
|
|
387
|
</property>
|
|
388
|
</port>
|
|
389
|
<entity name="Rescale" class="org.ecoinformatics.seek.workflow.Rescale">
|
|
390
|
<property name="Rescale" class="org.ecoinformatics.seek.workflow.Rescale$BlankActorPaneFactory">
|
|
391
|
</property>
|
|
392
|
<property name="_location" class="ptolemy.kernel.util.Location" value="150.6202850341797, 97.14403533935547">
|
|
393
|
</property>
|
|
394
|
<port name="data" class="ptolemy.actor.TypedIOPort">
|
|
395
|
<property name="input"/>
|
|
396
|
</port>
|
|
397
|
<port name="dataoutput" class="ptolemy.actor.TypedIOPort">
|
|
398
|
<property name="output"/>
|
|
399
|
<property name="_cardinal" class="ptolemy.kernel.util.StringAttribute" value="EAST">
|
|
400
|
</property>
|
|
401
|
</port>
|
|
402
|
<port name="scaleValue" class="ptolemy.actor.TypedIOPort">
|
|
403
|
<property name="input"/>
|
|
404
|
<property name="_cardinal" class="ptolemy.kernel.util.StringAttribute" value="WEST">
|
|
405
|
</property>
|
|
406
|
</port>
|
|
407
|
</entity>
|
|
408
|
<entity name="SpeciesOccCount" class="org.ecoinformatics.seek.workflow.SpeciesCount">
|
|
409
|
<property name="SpeciesCount" class="org.ecoinformatics.seek.workflow.SpeciesCount$BlankActorPaneFactory">
|
|
410
|
</property>
|
|
411
|
<property name="_location" class="ptolemy.kernel.util.Location" value="255.6202850341797, 97.14403533935547">
|
|
412
|
</property>
|
|
413
|
<port name="speciesPresence" class="ptolemy.actor.TypedIOPort">
|
|
414
|
<property name="input"/>
|
|
415
|
</port>
|
|
416
|
<port name="counts" class="ptolemy.actor.TypedIOPort">
|
|
417
|
<property name="output"/>
|
|
418
|
<property name="_cardinal" class="ptolemy.kernel.util.StringAttribute" value="EAST">
|
|
419
|
</property>
|
|
420
|
</port>
|
|
421
|
</entity>
|
|
422
|
<entity name="Comparator" class="ptolemy.actor.lib.logic.Comparator">
|
|
423
|
<property name="comparison" class="ptolemy.kernel.util.StringAttribute" value=">">
|
|
424
|
<property name="style" class="ptolemy.actor.gui.style.ChoiceStyle">
|
|
425
|
<property name="gt" class="ptolemy.kernel.util.StringAttribute" value=">">
|
|
426
|
</property>
|
|
427
|
<property name="ge" class="ptolemy.kernel.util.StringAttribute" value=">=">
|
|
428
|
</property>
|
|
429
|
<property name="lt" class="ptolemy.kernel.util.StringAttribute" value="<">
|
|
430
|
</property>
|
|
431
|
<property name="le" class="ptolemy.kernel.util.StringAttribute" value="<=">
|
|
432
|
</property>
|
|
433
|
<property name="eq" class="ptolemy.kernel.util.StringAttribute" value="==">
|
|
434
|
</property>
|
|
435
|
</property>
|
|
436
|
</property>
|
|
437
|
<property name="tolerance" class="ptolemy.data.expr.Parameter" value="0.0">
|
|
438
|
</property>
|
|
439
|
<property name="_icon" class="ptolemy.vergil.icon.AttributeValueIcon">
|
|
440
|
<property name="attributeName" class="ptolemy.kernel.util.StringAttribute" value="comparison">
|
|
441
|
</property>
|
|
442
|
<property name="displayWidth" class="ptolemy.data.expr.Parameter" value="6">
|
|
443
|
</property>
|
|
444
|
</property>
|
|
445
|
<property name="_location" class="ptolemy.kernel.util.Location" value="325.0, 190.0">
|
|
446
|
</property>
|
|
447
|
<port name="left" class="ptolemy.actor.TypedIOPort">
|
|
448
|
<property name="input"/>
|
|
449
|
</port>
|
|
450
|
<port name="right" class="ptolemy.actor.TypedIOPort">
|
|
451
|
<property name="input"/>
|
|
452
|
</port>
|
|
453
|
<port name="output" class="ptolemy.actor.TypedIOPort">
|
|
454
|
<property name="output"/>
|
|
455
|
</port>
|
|
456
|
</entity>
|
|
457
|
<relation name="relation4" class="ptolemy.actor.TypedIORelation">
|
|
458
|
</relation>
|
|
459
|
<relation name="relation8" class="ptolemy.actor.TypedIORelation">
|
|
460
|
</relation>
|
|
461
|
<relation name="relation" class="ptolemy.actor.TypedIORelation">
|
|
462
|
</relation>
|
|
463
|
<relation name="relation5" class="ptolemy.actor.TypedIORelation">
|
|
464
|
</relation>
|
|
465
|
<relation name="relation2" class="ptolemy.actor.TypedIORelation">
|
|
466
|
</relation>
|
|
467
|
<relation name="relation3" class="ptolemy.actor.TypedIORelation">
|
|
468
|
</relation>
|
|
469
|
<link port="DiGIR Single Species result" relation="relation2"/>
|
|
470
|
<link port="scalevalue" relation="relation5"/>
|
|
471
|
<link port="threshold" relation="relation"/>
|
|
472
|
<link port="good species" relation="relation3"/>
|
|
473
|
<link port="Rescale.data" relation="relation2"/>
|
|
474
|
<link port="Rescale.dataoutput" relation="relation4"/>
|
|
475
|
<link port="Rescale.scaleValue" relation="relation5"/>
|
|
476
|
<link port="SpeciesOccCount.speciesPresence" relation="relation4"/>
|
|
477
|
<link port="SpeciesOccCount.counts" relation="relation8"/>
|
|
478
|
<link port="Comparator.left" relation="relation8"/>
|
|
479
|
<link port="Comparator.right" relation="relation"/>
|
|
480
|
<link port="Comparator.output" relation="relation3"/>
|
|
481
|
</entity>
|
|
482
|
<entity name="Sampling" class="org.ecoinformatics.seek.workflow.Sampling">
|
|
483
|
<property name="Sampling" class="org.ecoinformatics.seek.workflow.Sampling$BlankActorPaneFactory">
|
|
484
|
</property>
|
|
485
|
<property name="_location" class="ptolemy.kernel.util.Location" value="620.0, -160.0">
|
|
486
|
</property>
|
|
487
|
<port name="species" class="ptolemy.actor.TypedIOPort">
|
|
488
|
<property name="input"/>
|
|
489
|
</port>
|
|
490
|
<port name="scalingMetric" class="ptolemy.actor.TypedIOPort">
|
|
491
|
<property name="input"/>
|
|
492
|
<property name="_cardinal" class="ptolemy.kernel.util.StringAttribute" value="WEST">
|
|
493
|
</property>
|
|
494
|
</port>
|
|
495
|
<port name="trainingAndIntrinsicTestData" class="ptolemy.actor.TypedIOPort">
|
|
496
|
<property name="output"/>
|
|
497
|
<property name="multiport"/>
|
|
498
|
</port>
|
|
499
|
<port name="extrinsicTestData" class="ptolemy.actor.TypedIOPort">
|
|
500
|
<property name="output"/>
|
|
501
|
</port>
|
|
502
|
</entity>
|
|
503
|
<entity name="Clipping" class="org.ecoinformatics.seek.workflow.Clipping">
|
|
504
|
<property name="Clipping" class="org.ecoinformatics.seek.workflow.Clipping$BlankActorPaneFactory">
|
|
505
|
</property>
|
|
506
|
<property name="_location" class="ptolemy.kernel.util.Location" value="675.0, -300.0">
|
|
507
|
</property>
|
|
508
|
<port name="envlayer" class="ptolemy.actor.TypedIOPort">
|
|
509
|
<property name="input"/>
|
|
510
|
</port>
|
|
511
|
<port name="species" class="ptolemy.actor.TypedIOPort">
|
|
512
|
<property name="_cardinal" class="ptolemy.kernel.util.StringAttribute" value="WEST">
|
|
513
|
</property>
|
|
514
|
</port>
|
|
515
|
<port name="clippedLayersPerSpecies" class="ptolemy.actor.TypedIOPort">
|
|
516
|
<property name="output"/>
|
|
517
|
</port>
|
|
518
|
</entity>
|
|
519
|
<entity name="DiGIRQuery" class="org.ecoinformatics.seek.workflow.DiGIRQuery">
|
|
520
|
<property name="DiGIRQuery" class="org.ecoinformatics.seek.workflow.DiGIRQuery$BlankActorPaneFactory">
|
|
521
|
</property>
|
|
522
|
<property name="_location" class="ptolemy.kernel.util.Location" value="315.0, -365.0">
|
|
523
|
</property>
|
|
524
|
<port name="queryString" class="ptolemy.actor.TypedIOPort">
|
|
525
|
<property name="input"/>
|
|
526
|
</port>
|
|
527
|
<port name="resultset" class="ptolemy.actor.TypedIOPort">
|
|
528
|
<property name="output"/>
|
|
529
|
</port>
|
|
530
|
</entity>
|
|
531
|
<entity name="GarpDataVector(GarpPresampleLayers)" class="org.ecoinformatics.seek.garp.GarpPresampleLayers">
|
|
532
|
<doc>Presample layer files for use with the GarpAlgorithm Actor.</doc>
|
|
533
|
<property name="_location" class="ptolemy.kernel.util.Location" value="810.0, -220.0">
|
|
534
|
</property>
|
|
535
|
<port name="layersetFilename" class="ptolemy.actor.TypedIOPort">
|
|
536
|
<property name="input"/>
|
|
537
|
</port>
|
|
538
|
<port name="dataPointFileName" class="ptolemy.actor.TypedIOPort">
|
|
539
|
<property name="input"/>
|
|
540
|
</port>
|
|
541
|
<port name="cellSetFileName" class="ptolemy.actor.TypedIOPort">
|
|
542
|
<property name="input"/>
|
|
543
|
</port>
|
|
544
|
<port name="cellSetFileNameOutput" class="ptolemy.actor.TypedIOPort">
|
|
545
|
<property name="output"/>
|
|
546
|
</port>
|
|
547
|
</entity>
|
|
548
|
<entity name="GarpPrediction" class="org.ecoinformatics.seek.garp.GarpPrediction">
|
|
549
|
<doc>Create a prediction based on the output of a GarpAlgorithm actor.</doc>
|
|
550
|
<property name="_location" class="ptolemy.kernel.util.Location" value="1005.0, -125.0">
|
|
551
|
</property>
|
|
552
|
<port name="ruleSetFilename" class="ptolemy.actor.TypedIOPort">
|
|
553
|
<property name="input"/>
|
|
554
|
</port>
|
|
555
|
<port name="layersetFilename" class="ptolemy.actor.TypedIOPort">
|
|
556
|
<property name="input"/>
|
|
557
|
</port>
|
|
558
|
<port name="outputASCII" class="ptolemy.actor.TypedIOPort">
|
|
559
|
<property name="input"/>
|
|
560
|
</port>
|
|
561
|
<port name="outputBMP" class="ptolemy.actor.TypedIOPort">
|
|
562
|
<property name="input"/>
|
|
563
|
</port>
|
|
564
|
<port name="outputASCIIFileName" class="ptolemy.actor.TypedIOPort">
|
|
565
|
<property name="output"/>
|
|
566
|
</port>
|
|
567
|
<port name="outputBMPFileName" class="ptolemy.actor.TypedIOPort">
|
|
568
|
<property name="output"/>
|
|
569
|
</port>
|
|
570
|
</entity>
|
|
571
|
<entity name="GarpAlgorithm" class="org.ecoinformatics.seek.garp.GarpAlgorithm">
|
|
572
|
<doc>Run the GARP algorithm</doc>
|
|
573
|
<property name="_location" class="ptolemy.kernel.util.Location" value="930.0, -180.0">
|
|
574
|
</property>
|
|
575
|
<port name="cellSetFileName" class="ptolemy.actor.TypedIOPort">
|
|
576
|
<property name="input"/>
|
|
577
|
</port>
|
|
578
|
<port name="ruleSetFilename" class="ptolemy.actor.TypedIOPort">
|
|
579
|
<property name="input"/>
|
|
580
|
</port>
|
|
581
|
<port name="ruleSetFilenameOutput" class="ptolemy.actor.TypedIOPort">
|
|
582
|
<property name="output"/>
|
|
583
|
</port>
|
|
584
|
</entity>
|
|
585
|
<entity name="HaltIteration" class="ptolemy.actor.TypedCompositeActor">
|
|
586
|
<property name="_location" class="ptolemy.kernel.util.Location" value="770.0, -10.0">
|
|
587
|
</property>
|
|
588
|
<property name="annotation" class="ptolemy.kernel.util.Attribute">
|
|
589
|
<property name="_hideName" class="ptolemy.kernel.util.SingletonAttribute">
|
|
590
|
</property>
|
|
591
|
<property name="_iconDescription" class="ptolemy.kernel.util.SingletonConfigurableAttribute">
|
|
592
|
<configure><svg><text x="20" y="20" style="font-size:14; font-family:SansSerif; fill:blue">when the loop is still running, it passes origInput through origOutput.
|
|
593
|
when it is done, it passes true out the done output</text></svg></configure>
|
|
594
|
</property>
|
|
595
|
<property name="_smallIconDescription" class="ptolemy.kernel.util.SingletonConfigurableAttribute">
|
|
596
|
<configure>
|
|
597
|
<svg>
|
|
598
|
<text x="20" style="font-size:14; font-family:SansSerif; fill:blue" y="20">-A-</text>
|
|
599
|
</svg>
|
|
600
|
</configure>
|
|
601
|
</property>
|
|
602
|
<property name="_controllerFactory" class="ptolemy.vergil.basic.NodeControllerFactory">
|
|
603
|
</property>
|
|
604
|
<property name="_editorFactory" class="ptolemy.vergil.toolbox.AnnotationEditorFactory">
|
|
605
|
</property>
|
|
606
|
<property name="_location" class="ptolemy.kernel.util.Location" value="115.0, 75.0">
|
|
607
|
</property>
|
|
608
|
</property>
|
|
609
|
<port name="incrementCounter" class="ptolemy.actor.TypedIOPort">
|
|
610
|
<property name="input"/>
|
|
611
|
<property name="_location" class="ptolemy.kernel.util.Location" value="20.0, 200.0">
|
|
612
|
</property>
|
|
613
|
</port>
|
|
614
|
<port name="maxCount" class="ptolemy.actor.TypedIOPort">
|
|
615
|
<property name="input"/>
|
|
616
|
<property name="_location" class="ptolemy.kernel.util.Location" value="25.0, 295.0">
|
|
617
|
</property>
|
|
618
|
</port>
|
|
619
|
<port name="origOutput" class="ptolemy.actor.TypedIOPort">
|
|
620
|
<property name="output"/>
|
|
621
|
<property name="multiport"/>
|
|
622
|
<property name="_location" class="ptolemy.kernel.util.Location" value="535.0, 195.0">
|
|
623
|
</property>
|
|
624
|
</port>
|
|
625
|
<port name="origInput" class="ptolemy.actor.TypedIOPort">
|
|
626
|
<property name="input"/>
|
|
627
|
<property name="_location" class="ptolemy.kernel.util.Location" value="30.0, 125.0">
|
|
628
|
</property>
|
|
629
|
</port>
|
|
630
|
<port name="loopDone" class="ptolemy.actor.TypedIOPort">
|
|
631
|
<property name="output"/>
|
|
632
|
<property name="multiport"/>
|
|
633
|
<property name="_location" class="ptolemy.kernel.util.Location" value="540.0, 320.0">
|
|
634
|
</property>
|
|
635
|
</port>
|
|
636
|
<entity name="Counter" class="ptolemy.actor.lib.Counter">
|
|
637
|
<property name="_location" class="ptolemy.kernel.util.Location" value="240.0, 235.0">
|
|
638
|
</property>
|
|
639
|
<port name="increment" class="ptolemy.actor.TypedIOPort">
|
|
640
|
<property name="input"/>
|
|
641
|
</port>
|
|
642
|
<port name="decrement" class="ptolemy.actor.TypedIOPort">
|
|
643
|
<property name="input"/>
|
|
644
|
</port>
|
|
645
|
<port name="output" class="ptolemy.actor.TypedIOPort">
|
|
646
|
<property name="output"/>
|
|
647
|
</port>
|
|
648
|
</entity>
|
|
649
|
<entity name="Equals" class="ptolemy.actor.lib.logic.Equals">
|
|
650
|
<property name="_location" class="ptolemy.kernel.util.Location" value="355.0, 295.0">
|
|
651
|
</property>
|
|
652
|
<port name="input" class="ptolemy.actor.TypedIOPort">
|
|
653
|
<property name="input"/>
|
|
654
|
<property name="multiport"/>
|
|
655
|
</port>
|
|
656
|
<port name="output" class="ptolemy.actor.TypedIOPort">
|
|
657
|
<property name="output"/>
|
|
658
|
</port>
|
|
659
|
</entity>
|
|
660
|
<entity name="IsPresent" class="ptolemy.actor.lib.logic.IsPresent">
|
|
661
|
<property name="_location" class="ptolemy.kernel.util.Location" value="455.0, 195.0">
|
|
662
|
</property>
|
|
663
|
<port name="input" class="ptolemy.actor.TypedIOPort">
|
|
664
|
<property name="input"/>
|
|
665
|
<property name="multiport"/>
|
|
666
|
</port>
|
|
667
|
<port name="output" class="ptolemy.actor.TypedIOPort">
|
|
668
|
<property name="output"/>
|
|
669
|
<property name="multiport"/>
|
|
670
|
</port>
|
|
671
|
</entity>
|
|
672
|
<relation name="relation" class="ptolemy.actor.TypedIORelation">
|
|
673
|
</relation>
|
|
674
|
<relation name="relation2" class="ptolemy.actor.TypedIORelation">
|
|
675
|
</relation>
|
|
676
|
<relation name="relation3" class="ptolemy.actor.TypedIORelation">
|
|
677
|
</relation>
|
|
678
|
<relation name="relation5" class="ptolemy.actor.TypedIORelation">
|
|
679
|
</relation>
|
|
680
|
<link port="incrementCounter" relation="relation"/>
|
|
681
|
<link port="maxCount" relation="relation3"/>
|
|
682
|
<link port="Counter.increment" relation="relation"/>
|
|
683
|
<link port="Counter.output" relation="relation2"/>
|
|
684
|
<link port="Equals.input" relation="relation2"/>
|
|
685
|
<link port="Equals.input" relation="relation3"/>
|
|
686
|
<link port="Equals.output" relation="relation5"/>
|
|
687
|
<link port="IsPresent.input" relation="relation5"/>
|
|
688
|
</entity>
|
|
689
|
<entity name="RescaleValues" class="org.ecoinformatics.seek.workflow.Rescale">
|
|
690
|
<property name="Rescale" class="org.ecoinformatics.seek.workflow.Rescale$BlankActorPaneFactory">
|
|
691
|
</property>
|
|
692
|
<property name="_location" class="ptolemy.kernel.util.Location" value="460.0, -470.0">
|
|
693
|
</property>
|
|
694
|
<port name="envLayer" class="ptolemy.actor.TypedIOPort">
|
|
695
|
<property name="input"/>
|
|
696
|
</port>
|
|
697
|
<port name="scaledEnvLayer" class="ptolemy.actor.TypedIOPort">
|
|
698
|
<property name="output"/>
|
|
699
|
<property name="multiport"/>
|
|
700
|
<property name="_cardinal" class="ptolemy.kernel.util.StringAttribute" value="EAST">
|
|
701
|
</property>
|
|
702
|
</port>
|
|
703
|
<port name="scalingMetadata" class="ptolemy.actor.TypedIOPort">
|
|
704
|
<property name="output"/>
|
|
705
|
<property name="_cardinal" class="ptolemy.kernel.util.StringAttribute" value="EAST">
|
|
706
|
</property>
|
|
707
|
</port>
|
|
708
|
</entity>
|
|
709
|
<entity name="ErrorMatrixGenerator" class="org.ecoinformatics.seek.workflow.ErrorMatrixGenerator">
|
|
710
|
<property name="ErrorMatrixGenerator" class="org.ecoinformatics.seek.workflow.ErrorMatrixGenerator$BlankActorPaneFactory">
|
|
711
|
</property>
|
|
712
|
<property name="_location" class="ptolemy.kernel.util.Location" value="1150.0, -80.0">
|
|
713
|
</property>
|
|
714
|
<port name="occurrencegrid" class="ptolemy.actor.TypedIOPort">
|
|
715
|
<property name="input"/>
|
|
716
|
<property name="_cardinal" class="ptolemy.kernel.util.StringAttribute" value="WEST">
|
|
717
|
</property>
|
|
718
|
</port>
|
|
719
|
<port name="extrinsicTestData" class="ptolemy.actor.TypedIOPort">
|
|
720
|
<property name="input"/>
|
|
721
|
<property name="_cardinal" class="ptolemy.kernel.util.StringAttribute" value="WEST">
|
|
722
|
</property>
|
|
723
|
</port>
|
|
724
|
<port name="iterationMetadata" class="ptolemy.actor.TypedIOPort">
|
|
725
|
<property name="output"/>
|
|
726
|
</port>
|
|
727
|
</entity>
|
|
728
|
<entity name="modelFilter" class="ptolemy.actor.TypedCompositeActor">
|
|
729
|
<property name="_location" class="ptolemy.kernel.util.Location" value="820.0, 90.0">
|
|
730
|
</property>
|
|
731
|
<property name="annotation" class="ptolemy.kernel.util.Attribute">
|
|
732
|
<property name="_hideName" class="ptolemy.kernel.util.SingletonAttribute">
|
|
733
|
</property>
|
|
734
|
<property name="_iconDescription" class="ptolemy.kernel.util.SingletonConfigurableAttribute">
|
|
735
|
<configure><svg><text x="20" y="20" style="font-size:14; font-family:SansSerif; fill:blue">-save the iteration matrix
|
|
736
|
-select the runs that meet the threshhold of min ommission (params in DTGarp (middle panel))
|
|
737
|
-calc the medium commission of the min ommission models
|
|
738
|
-select the user-defined percentage of the min ommission models that are closest to the median commission (from prev step)
|
|
739
|
</text></svg></configure>
|
|
740
|
</property>
|
|
741
|
<property name="_smallIconDescription" class="ptolemy.kernel.util.SingletonConfigurableAttribute">
|
|
742
|
<configure>
|
|
743
|
<svg>
|
|
744
|
<text x="20" style="font-size:14; font-family:SansSerif; fill:blue" y="20">-A-</text>
|
|
745
|
</svg>
|
|
746
|
</configure>
|
|
747
|
</property>
|
|
748
|
<property name="_controllerFactory" class="ptolemy.vergil.basic.NodeControllerFactory">
|
|
749
|
</property>
|
|
750
|
<property name="_editorFactory" class="ptolemy.vergil.toolbox.AnnotationEditorFactory">
|
|
751
|
</property>
|
|
752
|
<property name="_location" class="ptolemy.kernel.util.Location" value="-15.0, 245.0">
|
|
753
|
</property>
|
|
754
|
</property>
|
|
755
|
<port name="iterationMetadataMatrix" class="ptolemy.actor.TypedIOPort">
|
|
756
|
<property name="input"/>
|
|
757
|
<property name="_location" class="ptolemy.kernel.util.Location" value="35.0, 100.0">
|
|
758
|
</property>
|
|
759
|
</port>
|
|
760
|
<port name="modelSubset" class="ptolemy.actor.TypedIOPort">
|
|
761
|
<property name="output"/>
|
|
762
|
<property name="_location" class="ptolemy.kernel.util.Location" value="505.0, 95.0">
|
|
763
|
</property>
|
|
764
|
</port>
|
|
765
|
</entity>
|
|
766
|
<entity name="NeuralNet" class="ptolemy.actor.TypedCompositeActor">
|
|
767
|
<property name="_location" class="ptolemy.kernel.util.Location" value="35.0, 90.0">
|
|
768
|
</property>
|
|
769
|
<property name="annotation" class="ptolemy.kernel.util.Attribute">
|
|
770
|
<property name="_hideName" class="ptolemy.kernel.util.SingletonAttribute">
|
|
771
|
</property>
|
|
772
|
<property name="_iconDescription" class="ptolemy.kernel.util.SingletonConfigurableAttribute">
|
|
773
|
<configure><svg><text x="20" y="20" style="font-size:14; font-family:SansSerif; fill:blue">input1: species selection prior to sampling
|
|
774
|
input2: output of clipping</text></svg></configure>
|
|
775
|
</property>
|
|
776
|
<property name="_smallIconDescription" class="ptolemy.kernel.util.SingletonConfigurableAttribute">
|
|
777
|
<configure>
|
|
778
|
<svg>
|
|
779
|
<text x="20" style="font-size:14; font-family:SansSerif; fill:blue" y="20">-A-</text>
|
|
780
|
</svg>
|
|
781
|
</configure>
|
|
782
|
</property>
|
|
783
|
<property name="_controllerFactory" class="ptolemy.vergil.basic.NodeControllerFactory">
|
|
784
|
</property>
|
|
785
|
<property name="_editorFactory" class="ptolemy.vergil.toolbox.AnnotationEditorFactory">
|
|
786
|
</property>
|
|
787
|
<property name="_location" class="ptolemy.kernel.util.Location" value="65.0, 55.0">
|
|
788
|
</property>
|
|
789
|
</property>
|
|
790
|
<port name="port" class="ptolemy.actor.TypedIOPort">
|
|
791
|
<property name="input"/>
|
|
792
|
<property name="_location" class="ptolemy.kernel.util.Location" value="20.0, 200.0">
|
|
793
|
</property>
|
|
794
|
</port>
|
|
795
|
<port name="port2" class="ptolemy.actor.TypedIOPort">
|
|
796
|
<property name="input"/>
|
|
797
|
<property name="_location" class="ptolemy.kernel.util.Location" value="20.0, 130.0">
|
|
798
|
</property>
|
|
799
|
</port>
|
|
800
|
</entity>
|
|
801
|
<entity name="GenerateFinalOutput" class="ptolemy.actor.TypedCompositeActor">
|
|
802
|
<property name="_location" class="ptolemy.kernel.util.Location" value="1060.0, 95.0">
|
|
803
|
</property>
|
|
804
|
<property name="annotation" class="ptolemy.kernel.util.Attribute">
|
|
805
|
<property name="_hideName" class="ptolemy.kernel.util.SingletonAttribute">
|
|
806
|
</property>
|
|
807
|
<property name="_iconDescription" class="ptolemy.kernel.util.SingletonConfigurableAttribute">
|
|
808
|
<configure><svg><text x="20" y="20" style="font-size:14; font-family:SansSerif; fill:blue">for each climate change layerset (including no change layersets aka origEnvLayers)
|
|
809
|
for each ruleset in selected rule matrix
|
|
810
|
get garp prediction on layerset
|
|
811
|
end for
|
|
812
|
sum grids
|
|
813
|
end for
|
|
814
|
</text></svg></configure>
|
|
815
|
</property>
|
|
816
|
<property name="_smallIconDescription" class="ptolemy.kernel.util.SingletonConfigurableAttribute">
|
|
817
|
<configure>
|
|
818
|
<svg>
|
|
819
|
<text x="20" style="font-size:14; font-family:SansSerif; fill:blue" y="20">-A-</text>
|
|
820
|
</svg>
|
|
821
|
</configure>
|
|
822
|
</property>
|
|
823
|
<property name="_controllerFactory" class="ptolemy.vergil.basic.NodeControllerFactory">
|
|
824
|
</property>
|
|
825
|
<property name="_editorFactory" class="ptolemy.vergil.toolbox.AnnotationEditorFactory">
|
|
826
|
</property>
|
|
827
|
<property name="_location" class="ptolemy.kernel.util.Location" value="115.0, 260.0">
|
|
828
|
</property>
|
|
829
|
</property>
|
|
830
|
<property name="_windowProperties" class="ptolemy.actor.gui.WindowPropertiesAttribute" value="{bounds={106, 131, 1024, 742}}">
|
|
831
|
</property>
|
|
832
|
<property name="_vergilSize" class="ptolemy.actor.gui.SizeAttribute" value="[813, 636]">
|
|
833
|
</property>
|
|
834
|
<port name="RescaleMetadata" class="ptolemy.actor.TypedIOPort">
|
|
835
|
<property name="input"/>
|
|
836
|
<property name="_location" class="ptolemy.kernel.util.Location" value="35.0, 80.0">
|
|
837
|
</property>
|
|
838
|
</port>
|
|
839
|
<port name="SelectedRuleMatrix" class="ptolemy.actor.TypedIOPort">
|
|
840
|
<property name="input"/>
|
|
841
|
<property name="_location" class="ptolemy.kernel.util.Location" value="35.0, 140.0">
|
|
842
|
</property>
|
|
843
|
</port>
|
|
844
|
<port name="origEnvLayers" class="ptolemy.actor.TypedIOPort">
|
|
845
|
<property name="input"/>
|
|
846
|
<property name="_location" class="ptolemy.kernel.util.Location" value="35.0, 195.0">
|
|
847
|
</property>
|
|
848
|
</port>
|
|
849
|
<port name="listOfClimateChangeEnvLayers" class="ptolemy.actor.TypedIOPort">
|
|
850
|
<property name="input"/>
|
|
851
|
<property name="_location" class="ptolemy.kernel.util.Location" value="35.0, 250.0">
|
|
852
|
</property>
|
|
853
|
</port>
|
|
854
|
<port name="predictedOccuranceGridSet" class="ptolemy.actor.TypedIOPort">
|
|
855
|
<property name="output"/>
|
|
856
|
<property name="_location" class="ptolemy.kernel.util.Location" value="565.0, 150.0">
|
|
857
|
</property>
|
|
858
|
</port>
|
|
859
|
</entity>
|
|
860
|
<entity name="GenerateMask" class="org.ecoinformatics.seek.workflow.GenerateMask">
|
|
861
|
<property name="GenerateMask" class="org.ecoinformatics.seek.workflow.GenerateMask$BlankActorPaneFactory">
|
|
862
|
</property>
|
|
863
|
<property name="_location" class="ptolemy.kernel.util.Location" value="610.0, 195.0">
|
|
864
|
</property>
|
|
865
|
<port name="occuranceData" class="ptolemy.actor.TypedIOPort">
|
|
866
|
<property name="input"/>
|
|
867
|
</port>
|
|
868
|
<port name="classifiedMap" class="ptolemy.actor.TypedIOPort">
|
|
869
|
<property name="input"/>
|
|
870
|
</port>
|
|
871
|
<port name="maskGrid" class="ptolemy.actor.TypedIOPort">
|
|
872
|
<property name="output"/>
|
|
873
|
</port>
|
|
874
|
</entity>
|
|
875
|
<entity name="gridReclassification" class="ptolemy.actor.TypedCompositeActor">
|
|
876
|
<property name="_location" class="ptolemy.kernel.util.Location" value="1170.0, 185.0">
|
|
877
|
</property>
|
|
878
|
<property name="annotation" class="ptolemy.kernel.util.Attribute">
|
|
879
|
<property name="_hideName" class="ptolemy.kernel.util.SingletonAttribute">
|
|
880
|
</property>
|
|
881
|
<property name="_iconDescription" class="ptolemy.kernel.util.SingletonConfigurableAttribute">
|
|
882
|
<configure><svg><text x="20" y="20" style="font-size:14; font-family:SansSerif; fill:blue">for each grid in gridSet
|
|
883
|
apply grid mask
|
|
884
|
end for</text></svg></configure>
|
|
885
|
</property>
|
|
886
|
<property name="_smallIconDescription" class="ptolemy.kernel.util.SingletonConfigurableAttribute">
|
|
887
|
<configure>
|
|
888
|
<svg>
|
|
889
|
<text x="20" style="font-size:14; font-family:SansSerif; fill:blue" y="20">-A-</text>
|
|
890
|
</svg>
|
|
891
|
</configure>
|
|
892
|
</property>
|
|
893
|
<property name="_controllerFactory" class="ptolemy.vergil.basic.NodeControllerFactory">
|
|
894
|
</property>
|
|
895
|
<property name="_editorFactory" class="ptolemy.vergil.toolbox.AnnotationEditorFactory">
|
|
896
|
</property>
|
|
897
|
<property name="_location" class="ptolemy.kernel.util.Location" value="160.0, 50.0">
|
|
898
|
</property>
|
|
899
|
</property>
|
|
900
|
<port name="occuranceGridSet" class="ptolemy.actor.TypedIOPort">
|
|
901
|
<property name="input"/>
|
|
902
|
<property name="_location" class="ptolemy.kernel.util.Location" value="35.0, 70.0">
|
|
903
|
</property>
|
|
904
|
</port>
|
|
905
|
<port name="gridMask" class="ptolemy.actor.TypedIOPort">
|
|
906
|
<property name="input"/>
|
|
907
|
<property name="_location" class="ptolemy.kernel.util.Location" value="35.0, 125.0">
|
|
908
|
</property>
|
|
909
|
</port>
|
|
910
|
<port name="reclassedGridSet" class="ptolemy.actor.TypedIOPort">
|
|
911
|
<property name="output"/>
|
|
912
|
<property name="_location" class="ptolemy.kernel.util.Location" value="420.0, 90.0">
|
|
913
|
</property>
|
|
914
|
</port>
|
|
915
|
</entity>
|
|
916
|
<entity name="ROCThresholdGenerator" class="ptolemy.actor.TypedCompositeActor">
|
|
917
|
<property name="_location" class="ptolemy.kernel.util.Location" value="1295.0, 230.0">
|
|
918
|
</property>
|
|
919
|
<property name="annotation" class="ptolemy.kernel.util.Attribute">
|
|
920
|
<property name="_hideName" class="ptolemy.kernel.util.SingletonAttribute">
|
|
921
|
</property>
|
|
922
|
<property name="_iconDescription" class="ptolemy.kernel.util.SingletonConfigurableAttribute">
|
|
923
|
<configure><svg><text x="20" y="20" style="font-size:14; font-family:SansSerif; fill:blue">for each set
|
|
924
|
run ROC algorithm
|
|
925
|
end for</text></svg></configure>
|
|
926
|
</property>
|
|
927
|
<property name="_smallIconDescription" class="ptolemy.kernel.util.SingletonConfigurableAttribute">
|
|
928
|
<configure>
|
|
929
|
<svg>
|
|
930
|
<text x="20" style="font-size:14; font-family:SansSerif; fill:blue" y="20">-A-</text>
|
|
931
|
</svg>
|
|
932
|
</configure>
|
|
933
|
</property>
|
|
934
|
<property name="_controllerFactory" class="ptolemy.vergil.basic.NodeControllerFactory">
|
|
935
|
</property>
|
|
936
|
<property name="_editorFactory" class="ptolemy.vergil.toolbox.AnnotationEditorFactory">
|
|
937
|
</property>
|
|
938
|
<property name="_location" class="ptolemy.kernel.util.Location" value="140.0, 55.0">
|
|
939
|
</property>
|
|
940
|
</property>
|
|
941
|
<property name="annotation2" class="ptolemy.kernel.util.Attribute">
|
|
942
|
<property name="_hideName" class="ptolemy.kernel.util.SingletonAttribute">
|
|
943
|
</property>
|
|
944
|
<property name="_iconDescription" class="ptolemy.kernel.util.SingletonConfigurableAttribute">
|
|
945
|
<configure><svg><text x="20" y="20" style="font-size:14; font-family:SansSerif; fill:blue">ROC = Reciever operating characteristic
|
|
946
|
|
|
947
|
insert terry's phd student's algorithm here</text></svg></configure>
|
|
948
|
</property>
|
|
949
|
<property name="_smallIconDescription" class="ptolemy.kernel.util.SingletonConfigurableAttribute">
|
|
950
|
<configure>
|
|
951
|
<svg>
|
|
952
|
<text x="20" style="font-size:14; font-family:SansSerif; fill:blue" y="20">-A-</text>
|
|
953
|
</svg>
|
|
954
|
</configure>
|
|
955
|
</property>
|
|
956
|
<property name="_controllerFactory" class="ptolemy.vergil.basic.NodeControllerFactory">
|
|
957
|
</property>
|
|
958
|
<property name="_editorFactory" class="ptolemy.vergil.toolbox.AnnotationEditorFactory">
|
|
959
|
</property>
|
|
960
|
<property name="_location" class="ptolemy.kernel.util.Location" value="125.0, 230.0">
|
|
961
|
</property>
|
|
962
|
</property>
|
|
963
|
<property name="annotation3" class="ptolemy.kernel.util.Attribute">
|
|
964
|
<property name="_hideName" class="ptolemy.kernel.util.SingletonAttribute">
|
|
965
|
</property>
|
|
966
|
<property name="_iconDescription" class="ptolemy.kernel.util.SingletonConfigurableAttribute">
|
|
967
|
<configure><svg><text x="20" y="20" style="font-size:14; font-family:SansSerif; fill:blue">this generates one output grid for each input grid</text></svg></configure>
|
|
968
|
</property>
|
|
969
|
<property name="_smallIconDescription" class="ptolemy.kernel.util.SingletonConfigurableAttribute">
|
|
970
|
<configure>
|
|
971
|
<svg>
|
|
972
|
<text x="20" style="font-size:14; font-family:SansSerif; fill:blue" y="20">-A-</text>
|
|
973
|
</svg>
|
|
974
|
</configure>
|
|
975
|
</property>
|
|
976
|
<property name="_controllerFactory" class="ptolemy.vergil.basic.NodeControllerFactory">
|
|
977
|
</property>
|
|
978
|
<property name="_editorFactory" class="ptolemy.vergil.toolbox.AnnotationEditorFactory">
|
|
979
|
</property>
|
|
980
|
<property name="_location" class="ptolemy.kernel.util.Location" value="305.0, 40.0">
|
|
981
|
</property>
|
|
982
|
</property>
|
|
983
|
<property name="annotation4" class="ptolemy.kernel.util.Attribute">
|
|
984
|
<property name="_hideName" class="ptolemy.kernel.util.SingletonAttribute">
|
|
985
|
</property>
|
|
986
|
<property name="_iconDescription" class="ptolemy.kernel.util.SingletonConfigurableAttribute">
|
|
987
|
<configure><svg><text x="20" y="20" style="font-size:14; font-family:SansSerif; fill:blue">***need to apply the threshold generator to the orig present dataset
|
|
988
|
this produces a threshold that we use to reclassify the grids</text></svg></configure>
|
|
989
|
</property>
|
|
990
|
<property name="_smallIconDescription" class="ptolemy.kernel.util.SingletonConfigurableAttribute">
|
|
991
|
<configure>
|
|
992
|
<svg>
|
|
993
|
<text x="20" style="font-size:14; font-family:SansSerif; fill:blue" y="20">-A-</text>
|
|
994
|
</svg>
|
|
995
|
</configure>
|
|
996
|
</property>
|
|
997
|
<property name="_controllerFactory" class="ptolemy.vergil.basic.NodeControllerFactory">
|
|
998
|
</property>
|
|
999
|
<property name="_editorFactory" class="ptolemy.vergil.toolbox.AnnotationEditorFactory">
|
|
1000
|
</property>
|
|
1001
|
<property name="_location" class="ptolemy.kernel.util.Location" value="120.0, 135.0">
|
|
1002
|
</property>
|
|
1003
|
</property>
|
|
1004
|
<port name="reclassedGridSet" class="ptolemy.actor.TypedIOPort">
|
|
1005
|
<property name="input"/>
|
|
1006
|
<property name="_location" class="ptolemy.kernel.util.Location" value="40.0, 75.0">
|
|
1007
|
</property>
|
|
1008
|
</port>
|
|
1009
|
<port name="occuranceGridSet" class="ptolemy.actor.TypedIOPort">
|
|
1010
|
<property name="input"/>
|
|
1011
|
<property name="_location" class="ptolemy.kernel.util.Location" value="40.0, 140.0">
|
|
1012
|
</property>
|
|
1013
|
</port>
|
|
1014
|
<port name="binaryGrid" class="ptolemy.actor.TypedIOPort">
|
|
1015
|
<property name="output"/>
|
|
1016
|
<property name="_location" class="ptolemy.kernel.util.Location" value="460.0, 100.0">
|
|
1017
|
</property>
|
|
1018
|
</port>
|
|
1019
|
<port name="extrinsicTestData" class="ptolemy.actor.TypedIOPort">
|
|
1020
|
<property name="input"/>
|
|
1021
|
<property name="_location" class="ptolemy.kernel.util.Location" value="40.0, 205.0">
|
|
1022
|
</property>
|
|
1023
|
</port>
|
|
1024
|
</entity>
|
|
1025
|
<entity name="summaryStats" class="ptolemy.actor.TypedCompositeActor">
|
|
1026
|
<property name="_location" class="ptolemy.kernel.util.Location" value="1305.0, 315.0">
|
|
1027
|
</property>
|
|
1028
|
<property name="annotation" class="ptolemy.kernel.util.Attribute">
|
|
1029
|
<property name="_hideName" class="ptolemy.kernel.util.SingletonAttribute">
|
|
1030
|
</property>
|
|
1031
|
<property name="_iconDescription" class="ptolemy.kernel.util.SingletonConfigurableAttribute">
|
|
1032
|
<configure><svg><text x="20" y="20" style="font-size:14; font-family:SansSerif; fill:blue">For each grid
|
|
1033
|
summarize frequency distro of cells
|
|
1034
|
end for
|
|
1035
|
for each pair-wise grid combo of
|
|
1036
|
((present or present-reclass) ^ (climate or climate-reclass))
|
|
1037
|
summarize frequency distro of cells (on the intersections)
|
|
1038
|
end for
|
|
1039
|
for each pair-wise grid combo of
|
|
1040
|
((present or present-reclass) v (climate or climate-reclass))
|
|
1041
|
conditioned on contiguity of climate cells with present cells
|
|
1042
|
when both are predicted present)
|
|
1043
|
for union outcome present presence gets flagged and climate cells with no flagged neighbor
|
|
1044
|
are set to not present
|
|
1045
|
end for
|
|
1046
|
For each grid (in outcome of loop above)
|
|
1047
|
summarize frequency distro of cells
|
|
1048
|
end for</text></svg></configure>
|
|
1049
|
</property>
|
|
1050
|
<property name="_smallIconDescription" class="ptolemy.kernel.util.SingletonConfigurableAttribute">
|
|
1051
|
<configure>
|
|
1052
|
<svg>
|
|
1053
|
<text x="20" style="font-size:14; font-family:SansSerif; fill:blue" y="20">-A-</text>
|
|
1054
|
</svg>
|
|
1055
|
</configure>
|
|
1056
|
</property>
|
|
1057
|
<property name="_controllerFactory" class="ptolemy.vergil.basic.NodeControllerFactory">
|
|
1058
|
</property>
|
|
1059
|
<property name="_editorFactory" class="ptolemy.vergil.toolbox.AnnotationEditorFactory">
|
|
1060
|
</property>
|
|
1061
|
<property name="_location" class="ptolemy.kernel.util.Location" value="20.0, 135.0">
|
|
1062
|
</property>
|
|
1063
|
</property>
|
|
1064
|
<property name="_windowProperties" class="ptolemy.actor.gui.WindowPropertiesAttribute" value="{bounds={23, 91, 927, 560}}">
|
|
1065
|
</property>
|
|
1066
|
<property name="_vergilSize" class="ptolemy.actor.gui.SizeAttribute" value="[716, 454]">
|
|
1067
|
</property>
|
|
1068
|
<port name="gridset" class="ptolemy.actor.TypedIOPort">
|
|
1069
|
<property name="input"/>
|
|
1070
|
<property name="_location" class="ptolemy.kernel.util.Location" value="40.0, 110.0">
|
|
1071
|
</property>
|
|
1072
|
</port>
|
|
1073
|
<port name="frequenceySummary" class="ptolemy.actor.TypedIOPort">
|
|
1074
|
<property name="output"/>
|
|
1075
|
<property name="_location" class="ptolemy.kernel.util.Location" value="430.0, 115.0">
|
|
1076
|
</property>
|
|
1077
|
</port>
|
|
1078
|
</entity>
|
|
1079
|
<relation name="relation3" class="ptolemy.actor.TypedIORelation">
|
|
1080
|
</relation>
|
|
1081
|
<relation name="relation2" class="ptolemy.actor.TypedIORelation">
|
|
1082
|
</relation>
|
|
1083
|
<relation name="relation4" class="ptolemy.actor.TypedIORelation">
|
|
1084
|
</relation>
|
|
1085
|
<relation name="relation6" class="ptolemy.actor.TypedIORelation">
|
|
1086
|
</relation>
|
|
1087
|
<relation name="relation7" class="ptolemy.actor.TypedIORelation">
|
|
1088
|
</relation>
|
|
1089
|
<relation name="relation8" class="ptolemy.actor.TypedIORelation">
|
|
1090
|
</relation>
|
|
1091
|
<relation name="relation5" class="ptolemy.actor.TypedIORelation">
|
|
1092
|
</relation>
|
|
1093
|
<relation name="relation10" class="ptolemy.actor.TypedIORelation">
|
|
1094
|
</relation>
|
|
1095
|
<relation name="relation" class="ptolemy.actor.TypedIORelation">
|
|
1096
|
</relation>
|
|
1097
|
<relation name="relation14" class="ptolemy.actor.TypedIORelation">
|
|
1098
|
<vertex name="vertex1" value="740.0, -300.0">
|
|
1099
|
</vertex>
|
|
1100
|
</relation>
|
|
1101
|
<relation name="relation17" class="ptolemy.actor.TypedIORelation">
|
|
1102
|
</relation>
|
|
1103
|
<relation name="relation18" class="ptolemy.actor.TypedIORelation">
|
|
1104
|
</relation>
|
|
1105
|
<relation name="relation12" class="ptolemy.actor.TypedIORelation">
|
|
1106
|
<vertex name="vertex1" value="525.0, -10.0">
|
|
1107
|
</vertex>
|
|
1108
|
</relation>
|
|
1109
|
<relation name="relation11" class="ptolemy.actor.TypedIORelation">
|
|
1110
|
<vertex name="vertex1" value="760.0, -200.0">
|
|
1111
|
</vertex>
|
|
1112
|
</relation>
|
|
1113
|
<relation name="relation9" class="ptolemy.actor.TypedIORelation">
|
|
1114
|
</relation>
|
|
1115
|
<relation name="relation19" class="ptolemy.actor.TypedIORelation">
|
|
1116
|
<vertex name="vertex1" value="900.0, -480.0">
|
|
1117
|
</vertex>
|
|
1118
|
</relation>
|
|
1119
|
<relation name="relation16" class="ptolemy.actor.TypedIORelation">
|
|
1120
|
</relation>
|
|
1121
|
<relation name="relation20" class="ptolemy.actor.TypedIORelation">
|
|
1122
|
<vertex name="vertex1" value="960.0, -535.0">
|
|
1123
|
</vertex>
|
|
1124
|
</relation>
|
|
1125
|
<relation name="relation13" class="ptolemy.actor.TypedIORelation">
|
|
1126
|
<vertex name="vertex1" value="1075.0, -85.0">
|
|
1127
|
</vertex>
|
|
1128
|
</relation>
|
|
1129
|
<relation name="relation15" class="ptolemy.actor.TypedIORelation">
|
|
1130
|
</relation>
|
|
1131
|
<relation name="relation22" class="ptolemy.actor.TypedIORelation">
|
|
1132
|
</relation>
|
|
1133
|
<relation name="relation23" class="ptolemy.actor.TypedIORelation">
|
|
1134
|
</relation>
|
|
1135
|
<relation name="relation24" class="ptolemy.actor.TypedIORelation">
|
|
1136
|
</relation>
|
|
1137
|
<relation name="relation25" class="ptolemy.actor.TypedIORelation">
|
|
1138
|
</relation>
|
|
1139
|
<relation name="relation26" class="ptolemy.actor.TypedIORelation">
|
|
1140
|
</relation>
|
|
1141
|
<relation name="relation28" class="ptolemy.actor.TypedIORelation">
|
|
1142
|
</relation>
|
|
1143
|
<relation name="relation29" class="ptolemy.actor.TypedIORelation">
|
|
1144
|
</relation>
|
|
1145
|
<relation name="relation27" class="ptolemy.actor.TypedIORelation">
|
|
1146
|
<vertex name="vertex1" value="1035.0, 240.0">
|
|
1147
|
</vertex>
|
|
1148
|
</relation>
|
|
1149
|
<relation name="relation21" class="ptolemy.actor.TypedIORelation">
|
|
1150
|
<vertex name="vertex1" value="855.0, -70.0">
|
|
1151
|
</vertex>
|
|
1152
|
</relation>
|
|
1153
|
<relation name="relation30" class="ptolemy.actor.TypedIORelation">
|
|
1154
|
</relation>
|
|
1155
|
<relation name="relation31" class="ptolemy.actor.TypedIORelation">
|
|
1156
|
</relation>
|
|
1157
|
<link port="envLayers" relation="relation5"/>
|
|
1158
|
<link port="envLayers" relation="relation9"/>
|
|
1159
|
<link port="DiGIR Query" relation="relation10"/>
|
|
1160
|
<link port="listOfClimateChangeEnvLayers" relation="relation24"/>
|
|
1161
|
<link port="output" relation="relation31"/>
|
|
1162
|
<link port="classifiedMap" relation="relation26"/>
|
|
1163
|
<link port="envLayerMDExtraction.envLayer" relation="relation5"/>
|
|
1164
|
<link port="envLayerMDExtraction.extractedInfo" relation="relation3"/>
|
|
1165
|
<link port="GetUserInput.envlayerMD" relation="relation3"/>
|
|
1166
|
<link port="GetUserInput.scaleValue" relation="relation2"/>
|
|
1167
|
<link port="GetUserInput.minSampleSizeThreshold" relation="relation4"/>
|
|
1168
|
<link port="GetUserInput.sub sample method" relation="relation6"/>
|
|
1169
|
<link port="GetUserInput.number of garp replicates" relation="relation12"/>
|
|
1170
|
<link port="species selection.DiGIR Single Species result" relation="relation"/>
|
|
1171
|
<link port="species selection.scalevalue" relation="relation2"/>
|
|
1172
|
<link port="species selection.threshold" relation="relation4"/>
|
|
1173
|
<link port="species selection.good species" relation="relation7"/>
|
|
1174
|
<link port="species selection.good species" relation="relation8"/>
|
|
1175
|
<link port="species selection.good species" relation="relation25"/>
|
|
1176
|
<link port="Sampling.species" relation="relation8"/>
|
|
1177
|
<link port="Sampling.scalingMetric" relation="relation6"/>
|
|
1178
|
<link port="Sampling.trainingAndIntrinsicTestData" relation="relation11"/>
|
|
1179
|
<link port="Sampling.extrinsicTestData" relation="relation21"/>
|
|
1180
|
<link port="Clipping.envlayer" relation="relation16"/>
|
|
1181
|
<link port="Clipping.species" relation="relation7"/>
|
|
1182
|
<link port="Clipping.clippedLayersPerSpecies" relation="relation14"/>
|
|
1183
|
<link port="DiGIRQuery.queryString" relation="relation10"/>
|
|
1184
|
<link port="DiGIRQuery.resultset" relation="relation"/>
|
|
1185
|
<link port="GarpDataVector(GarpPresampleLayers).layersetFilename" relation="relation14"/>
|
|
1186
|
<link port="GarpDataVector(GarpPresampleLayers).dataPointFileName" relation="relation11"/>
|
|
1187
|
<link port="GarpDataVector(GarpPresampleLayers).cellSetFileNameOutput" relation="relation18"/>
|
|
1188
|
<link port="GarpPrediction.ruleSetFilename" relation="relation17"/>
|
|
1189
|
<link port="GarpPrediction.layersetFilename" relation="relation14"/>
|
|
1190
|
<link port="GarpPrediction.outputASCIIFileName" relation="relation13"/>
|
|
1191
|
<link port="GarpAlgorithm.cellSetFileName" relation="relation18"/>
|
|
1192
|
<link port="GarpAlgorithm.ruleSetFilenameOutput" relation="relation17"/>
|
|
1193
|
<link port="HaltIteration.incrementCounter" relation="relation13"/>
|
|
1194
|
<link port="HaltIteration.maxCount" relation="relation12"/>
|
|
1195
|
<link port="HaltIteration.origOutput" relation="relation11"/>
|
|
1196
|
<link port="HaltIteration.origInput" relation="relation15"/>
|
|
1197
|
<link port="HaltIteration.loopDone" relation="relation22"/>
|
|
1198
|
<link port="RescaleValues.envLayer" relation="relation9"/>
|
|
1199
|
<link port="RescaleValues.scaledEnvLayer" relation="relation16"/>
|
|
1200
|
<link port="RescaleValues.scaledEnvLayer" relation="relation19"/>
|
|
1201
|
<link port="RescaleValues.scalingMetadata" relation="relation20"/>
|
|
1202
|
<link port="ErrorMatrixGenerator.occurrencegrid" relation="relation13"/>
|
|
1203
|
<link port="ErrorMatrixGenerator.extrinsicTestData" relation="relation21"/>
|
|
1204
|
<link port="ErrorMatrixGenerator.iterationMetadata" relation="relation15"/>
|
|
1205
|
<link port="modelFilter.iterationMetadataMatrix" relation="relation22"/>
|
|
1206
|
<link port="modelFilter.modelSubset" relation="relation23"/>
|
|
1207
|
<link port="GenerateFinalOutput.RescaleMetadata" relation="relation20"/>
|
|
1208
|
<link port="GenerateFinalOutput.SelectedRuleMatrix" relation="relation23"/>
|
|
1209
|
<link port="GenerateFinalOutput.origEnvLayers" relation="relation19"/>
|
|
1210
|
<link port="GenerateFinalOutput.listOfClimateChangeEnvLayers" relation="relation24"/>
|
|
1211
|
<link port="GenerateFinalOutput.predictedOccuranceGridSet" relation="relation27"/>
|
|
1212
|
<link port="GenerateMask.occuranceData" relation="relation25"/>
|
|
1213
|
<link port="GenerateMask.classifiedMap" relation="relation26"/>
|
|
1214
|
<link port="GenerateMask.maskGrid" relation="relation28"/>
|
|
1215
|
<link port="gridReclassification.occuranceGridSet" relation="relation27"/>
|
|
1216
|
<link port="gridReclassification.gridMask" relation="relation28"/>
|
|
1217
|
<link port="gridReclassification.reclassedGridSet" relation="relation29"/>
|
|
1218
|
<link port="ROCThresholdGenerator.reclassedGridSet" relation="relation29"/>
|
|
1219
|
<link port="ROCThresholdGenerator.occuranceGridSet" relation="relation27"/>
|
|
1220
|
<link port="ROCThresholdGenerator.binaryGrid" relation="relation30"/>
|
|
1221
|
<link port="ROCThresholdGenerator.extrinsicTestData" relation="relation21"/>
|
|
1222
|
<link port="summaryStats.gridset" relation="relation30"/>
|
|
1223
|
<link port="summaryStats.frequenceySummary" relation="relation31"/>
|
|
1224
|
</entity>
|