Advanced Search integration
Over the past year, the LTER Network Office has developed an Advanced Search web
application that uses the Metacat client to run an advanced search on criteria
such as subject, author, spatial, and taxon. In its current form, the Advanced
Search interface exists as a separate web application, outside of the Metacat
code base. The goal of this task is the integrate the Advanced Search web
application with the Metacat code base, as described in more detail below.
Proposal to Integrate Advanced Search Capability
with Metacat Distribution
The goal is to refactor the Query application so that major parts
of it would be integrated with Metacat, while other parts of it
could be customized for LTER-specific needs and maintained
independent of Metacat.
1. Query Engine
The back-end Query Engine can be fully integrated with the Metacat
code base. It contains search engine functionality that is
generic to Metacat and should be relatively easy to factor out of
the Query application. Once it is part of Metacat, it can be
packaged as a library that can be distributed with the Query
application. After it is integrated with Metacat, the Query Engine
code can be maintained by all Metacat developers. If logical
improvements or performance optimizations are made to the Query
Engine code by the Metacat community, the LTER Query application
will benefit from these improvements and optimizations because
it will utilize the same code that Metacat utilizes.
2. Advanced Search Form
The Advanced Search Form is implemented as a JSP. It can be
reimplemented to eliminate the Struts-based custom tags that it
alternatively, form validation could be moved to the server side.
A LTER-customized version of the Advanced Search Form could be
maintained in the Query Application. It would be nearly identical
to the Metacat version, but it would contain additional input fields,
such as a drop-down list that allows the user to restrict the search
results to a particular LTER site.
If possible, a mechanism would be worked out to minimize the
duplication of effort that would be required to maintain both the
Metacat form and the custom LTER form and to keep them consistent.
3. Login Page, Simple Search Page, and Browse Page
These pages in the Query Application would not be integrated with
Metacat, since equivalent functionality already exists in the
default Metacat skin. These pages would continue to be part of the
Query application. Since the Query application uses Struts to manage
the functionality of these pages, we could continue to use Struts
in the Query application, though we would not need Struts in Metacat.
We may be able to utilize the Metacat skin to provide this
functionality for the Query application. Eventually, we may be
able to fully migrate all of the functionality of the Query application
to Metacat, though we would need to provide a way to extend the
Metacat skin with LTER customizations.
The current browse capability of the Query Application is intended
to be replaced by a browsable hierarchy of terms based on the work
that is being initiated in the LTER working groups for Ontologies
and Controlled Vocabularies. Since this work would be a valuable
contribution to Metacat as well, it would be useful to integrate
these new browse capabilities in the Metacat skin rather than
restrict them to just the Query application.
Task Effort (Weeks)
These tasks would fulfill Matt's requirements
to integrate the Advanced Search capability with
Metacat, while retaining the Query application as a
LTER custom application that shares some of its
software components with Metacat.
Refactor Query Engine. Add code 1
to Metacat. Refactor Query Application
to use Metacat library.
Refactor Advanced Search Form to eliminate 1
Struts custom tags.
Implement generic Advanced Search Form and 1
integrate it with Metacat Skin. Maintain custom
LTER form in the Query Application as an
extension to the Metacat form.
This optional phase would deprecate the Query application
as a separate entity, eliminating the duplication of
effort needed to keep its advanced search functionality
consistent with Metacat's. The time estimates for these
tasks should be adjusted after Phase One is completed,
since we will have a better understanding of the effort
required at that point.
Fully migrate the Query Application to Metacat, 2
allowing for LTER customizations within Metacat.
Other organizations could use the LTER customizations
in Metacat as a model for their own customizations.
On 9/6/2005, Mark Servilla wrote:
Attached, please find a brief statement of work proposed by Duane Costa
regarding the Advanced Query Interface for metacat. We consider the
re-unification of the two applications to be a high-priority to the LTER, NCEAS,
and the eco-community, and will begin the planning/work effort immediately. At
your earliest convenience, please review the SOW and let us know if this is
acceptable and/or if you have any questions/comments.
On 9/6/2005, Matt Jones wrote:
Thanks. In general this statement of work looks great -- no real modifications
on my part. It will be a great time-saver for many people who want an advanced
search in their metacat installation, so I appreciate it.
A couple of brief comments for context:
for session state. That has worked well, and is pretty robust.
and default skins -- this is incomplete and therefore broken, although it is
what is used on the main KNB page. The problem is that the session information
does not propagate across pages as one navigates through the app, especially in
the EML pages. We know why, but haven't fixed it. It would be a good time to do
so, so let us know if you have particular needs in your part of the login
2) We've wanted an effective browsable hierarchy of terms for KNB datasets, but
there just is't consensus on a controlled vocabulary. The one on the KNB skin is
one I made up with feedback from Mark S and a few others. If you get consensus
with LTER, we'd probably want to switch the KNB in general over to using it and
creating a browsing interface that allows one to navigate it. So that might be
another area for shared work.
3) I think the advanced search page needs a map to draw a box for spatial
searches. We've found users simply don't know the lat/lon for their area of
4) We are working on a spatial option for metacat for Kruger that allows the
locations of data to be plotted against other GIS layers in a map and searched
using spatial queries. This is in prototype now, but will be released hopefully
with the next metacat release. Just a FYI in case a similar request has come
5) The new SEEK web developer located at LNO (in process of hiring replacement
for Tekell) will be working on a portal for access to EcoGrid data (both EML and
DarwinCore). I hope we will be able to adapt your client interface so that it
can be applied to the web services backend in EcoGrid, as I think the
requirements are essentially the same.
Thanks. Looking forward to working on this with you.
On 9/23/05, Mark Servilla wrote:
Sorry for the delay in getting back to this matter. After discussing your
comments with Duane, the only item that impacts our involvement directly is
number 1 - the session management. It will be critical to work this problem to
completion. With respect to number 3, the map UI, we would appreciate any
suggestions in this area; short of installing a full-up ArcIMS/MapServer type of
version of this would require only the bounding lat/lon for the query. Thanks!
On 9/23/05, Matt Jones wrote:
Thanks for the followthrough. I agree that (1) needs to be worked out, and I'd
like to see the GT4 GSI certificate stuff that NCSA did before we decide on a
solution. We should probably take an approach that accomodates that if we're
delving into the auth infrastructure.
Regarding (3), I think there are several open-source geospatial libs for doing
this (we use one of them in Morpho). Maybe Duane could talk to John Harris (who
is working on this stuff in metacat now) and Dan Higgins (who did the geospatial
map in morpho) and come up with a proposal? My impression is that the java lib
Dan used was pretty effective and easy to plug into morpho, and I think others
have come about. GEON has one in their portal search client, so we might be
able to borrow code or ideas from them. We definitely don't want an IMS for
this part -- our needs are much simpler.
#1 Updated by Duane Costa over 14 years ago
Advanced Search Design and Implementation Plan
The Advanced Search interface was originally designed and implemented
at LNO as a Struts web application. However, to simplify its
integration with Metacat, it has been re-implemented with JSPs and
servlets, with all Struts being stripped out. It still retains some
of the desirable design characteristics of a Struts web application
in that it is based on a Model/View/Controller (MVC) architecture.
Design and implementation of the Metacat advanced search interface is
proposed as follows:
1. Back End: Advanced Search Engine (Model)
The back end advanced search engine is implemented in Java. It
is comprised of a package of related classes whose purpose is to:
(A) Construct a complex PathQuery XML string based on form inputs
stored in a bean class.
(B) Send the PathQuery XML to the Metacat client.
(C) Receive the search results from the Metacat client.
(D) Transform the search results to HTML and store them in a
request attribute where they can be displayed by a JSP.
The advanced search engine code will be stored in the following
2. Front End: Advanced Search Form (View)
The advanced search form is implemented in JSP and will be integrated,
as seamlessly as possible, with the existing set of Metacat skin JSPs.
For example, just as there is an existing skin JSP called:
that implements the simple search capability, there will be a new skin
that implements the advanced search capability.
The following files will be added to the default skin in directory
include_advancedsearch.jsp Implements the advanced search form.
index_advanced.jsp Similar to index.jsp, but replaces the
simple search box with the advanced
search form. When user clicks on the
">> advanced search <<" link, this
form replaces the index.jsp form.
advancedsearchresults.jsp Auxiliary JSP to display the advanced
search results that are generated by
tbe advanced search engine.
advancedsearchforward.jsp Auxiliary JSP that populates the bean
with form input and forwards control
to the advanced search servlet.
It will be necessary for other skins to integrate this code on an
individual basis. This is probably a good thing, because it will
allow us to work out any bugs first in the default skin, before
other groups begin to integrate the code into their particular
3. Advanced Search Servlet (Controller)
The advanced search servlet controls the interaction between the
JSPs, the bean, and the advanced search engine. (This serves the
same purpose as a Struts "action" class.) For simplicity, the
servlet code resides in the same package as the advanced search
#2 Updated by Duane Costa over 14 years ago
On 11/22/2005, Duane Costa wrote
I've checked in all my code to enhance the default skin with Advanced Search
functionality. A demo can be viewed on my PC at:
Mark will be sending you a follow-up message shortly to discuss where we go from
here with it.
On 11/28/2005, Mark Servilla wrote
Not too much to follow up on. The existing query interface code is not fully
integrated into the Metacat distribution due to the login infrastructure issue.
We (Duane) have taken the integration as far as we can until the session issue
is resolved. We are wondering what your schedule looks like for this fix, and
should we still remain open in the near future to complete the integration. I
believe that you are still targeting a 1 Jan release for ESA? Thanks.
On 11/28/2005, Duane Costa wrote
Just to expand on Mark's comments a bit: The Advanced Search code is fully
integrated into the Metacat distribution with regard to the 'default' skin. But
with regard to the 'lter' skin, we are still redirecting our Metacat interface
to a separate 'Query' web application maintained at LNO. Our goal is to
eventually base the 'lter' skin on a modified version of the 'default' skin in
the Metacat distribution, but we're holding off on that until the login and
session management bug in the 'default' skin is fixed.
Meanwhile, though, I've configured things such that the 'default' skin and our
separate 'Query' web application share as much common code as possible. This has
minimized the effort needed to maintain the two, but eventually we'd like to
drop the 'Query' web application altogether and maintain the 'lter' skin
completely from within Metacat.
On 11/28/2005, Mark Servilla wrote
One additional note...
After reviewing the start of this email thread, I realized that you may be
waiting for input from the NCSA folks regarding the authentication
infrastructure that was implemented for Metacat w/r to our grid pilot study.
I've attached the only document I have - it's a brief technical summary of the
GT4 Web Service implementation for Metacat. Please let me know if we need to
take any action from our side to make this happen.
On 11/28/2005, Matt Jones wrote
Hi Mark and Duane,
Sid has been working on new functional login infrastructure for the ESA skin,
which I believe is working. This has not been transferred to the KNB skin, but
I'm hoping we will before the release. I'll also try to get someone here to
integrate the advanced search into the other skins that we use so that it is
more universally accessible. We are still targeting a Jan 1 release. Thanks.
On 11/28/2005, Matt Jones wrote
Bill Baker at NCSA was very nice about keeping us updated on the GSI changes for
metacat. He even arranged a conference call with me, Sid, and Jing to review
what they changed and how it worked, and sent us the code in a nice package to
integrate in with metacat. So the ball is in our court to add the GSI
functionality, which I want to do, but probably not until after we get the ESA
registry up and running. I'll probably ask John or Sid to work on this in the
#3 Updated by Duane Costa over 14 years ago
Modified the advanced search servlet so that it no longer hard-codes the context
to 'knb'. The servlet dynamically reads the context property value from the
Modified the advanced search form so that it no longer hard-codes the URL to the
LiveMap 3.0 Java applet. The form now uses tokens to construct the URL to the
applet on the metacat server.
Modified build.xml to protect the LiveMap 3.0 applet jar file from ant token
I believe that all work on this bug has now been completed. I will close out the
bug. Work on migrating the advanced search interface from the default skin to
other skins will be tracked in separate bug entries.