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From 08/25/2010 to 09/23/2010

09/23/2010

03:54 PM Revision 5595 (metacat): added notes on packages to upload with knb-mn
berkley
02:39 PM Revision 5594 (metacat): use <p> consistently when providing a tooltip for the full class URI
ben leinfelder
02:35 PM Revision 5593 (metacat): number of changes:
-list measurements across the screen under their observation
-use title attributes for full ontology class URI, only ...
ben leinfelder
02:33 PM Revision 5592 (metacat): make DP title bold in result set
ben leinfelder
01:07 PM Revision 5591 (metacat): nest annotation groupings nicely for each obs/meas
ben leinfelder
12:40 PM Revision 5590 (metacat): include nesting borders
ben leinfelder
12:24 PM Revision 5589 (metacat): integrate Annotation in resultset better
ben leinfelder
12:12 PM Revision 5588 (metacat): place annotation information in the same cell as the data package title/id
ben leinfelder
11:56 AM Revision 5587 (metacat): include content in a wrapper div for margins
ben leinfelder
11:54 AM Revision 5586 (metacat): comment out debugging alert()
ben leinfelder
11:52 AM Revision 5585 (metacat): do not make hyperlinks extra bold
ben leinfelder
11:51 AM Revision 5584 (metacat): reduce white space
ben leinfelder
11:51 AM Revision 5583 (metacat): include some gray in the paragraphs
ben leinfelder
11:41 AM Revision 5582 (metacat): changed log labels per trac 843
berkley
11:37 AM Revision 5581 (metacat): use "Myriad..." fonts, then cascade down to Arial, sans... Lifted from BioPortal L+F
ben leinfelder
05:00 PM Revision 5578 (metacat): only show that an annotation exists in the resultset, not the full details
ben leinfelder

09/22/2010

11:55 AM Revision 5577 (metacat): fixed bug 818
berkley
11:23 AM Revision 5576 (metacat): make the header hyperlinks bold
ben leinfelder
11:07 AM Revision 5575 (metacat): reduce header font sizes
ben leinfelder
10:59 AM Revision 5574 (metacat): wrap content in div for margins
add bottom margin on header ben leinfelder
10:58 AM Revision 5573 (metacat): include clearer font [size]
add leaf at right ben leinfelder
10:42 AM Revision 5572 (metacat): new jar file
berkley
10:08 AM Revision 5571 (metacat): use light grey for backgrounds
dark grey for links ben leinfelder
09:49 AM Revision 5570 (metacat): don't use green for links
ben leinfelder

09/21/2010

04:50 PM Revision 5569 (metacat): include new graphic header for semtools skin.
adjust css to fit better ben leinfelder
03:56 PM Revision 5568 (metacat): updated the metacatpopulator to use the d1 eml parser to create system metadata in a smarter fashion.
berkley
02:30 PM Revision 5567 (metacat): only surround main dataset with border to avoid a weird border artifact when displaying sub-groups of the eml package
ben leinfelder
02:29 PM Revision 5566 (metacat): include header/footer like in the old JS-based template
ben leinfelder
01:08 PM Revision 5565 (metacat): do away with the "eml-common.xsl" - it's not really worth it in terms of being able to customize for each skin
ben leinfelder
12:51 PM Revision 5564 (metacat): use sbclter css
ben leinfelder
12:34 PM Revision 5563 (metacat): use shared style sheets for rendering eml. this is sbclter/pisco-like
ben leinfelder
12:31 PM Revision 5562 (metacat): consolidate shared stylesheets - no differences between 2.0.1 and 2.1.0 directories
ben leinfelder
12:31 PM Revision 5561 (metacat): consolidate shared stylesheets - no differences between 2.0.1 and 2.1.0 directories
ben leinfelder
12:29 PM Revision 5560 (metacat): consolidate shared stylesheets - no differences between 2.0.1 and 2.1.0 directories
ben leinfelder
11:26 AM Revision 5559 (metacat): better log message
berkley
11:03 AM Revision 5558 (metacat): remove duplicate "attributeindex" parameter
ben leinfelder
10:47 AM Revision 5557 (metacat): more debugging for objectInfo problem
berkley

09/20/2010

03:23 PM Revision 5556 (metacat): checking for a null objectformat
berkley
03:07 PM Revision 5555 (metacat): checking for a null objectformat
berkley
02:52 PM Revision 5554 (metacat): checking for a null objectformat
berkley
02:49 PM Revision 5553 (metacat): backtracking
berkley
02:40 PM Revision 5552 (metacat): add some error output
berkley
02:38 PM Revision 5551 (metacat): add some error output
berkley
02:06 PM Revision 5550 (metacat): added a check for bad data into listObjects
berkley

09/17/2010

04:29 PM Revision 5549 (metacat): commented out a println
berkley
11:34 AM Revision 5548 (metacat): new service api jar
berkley
10:48 AM Revision 5547 (metacat): updated DB scripts for D1 schemas
berkley

09/16/2010

05:24 AM Revision 5546 (metacat): Bug 3835 - design and implement OAI-PMH compliant harvest subsystem
Fix a bug in the EML to Dublin Core crosswalk XLSTs. First and last names were being concatenated. The fix is to plac... Duane Costa

09/15/2010

03:24 PM Bug #5176: Configuration to disable writing/updating/deleting function on metacat, but allow reading/querying
Yeah, reading can changes the database. So maybe shutting down the instance is the only choice. Jing Tao
03:11 PM Bug #5176: Configuration to disable writing/updating/deleting function on metacat, but allow reading/querying
The problem with this is that Metacat keeps an access log that records read operations as well as the others. So eve... Matt Jones
03:01 PM Bug #5176 (Resolved): Configuration to disable writing/updating/deleting function on metacat, but allow reading/querying
This scenario happened couple times:
An administrator tried to use a new machine to replace the old one. Eventuall...
Jing Tao

09/14/2010

01:28 PM Revision 5545 (metacat): changed improper use of getFS() to a /. getFS() should never be used with a URL since it will return \ on windows which is not a valid separator in a URL.
berkley

09/08/2010

02:32 PM Revision 5544 (metacat): removing unused search pages (leftover from 'default' skin copy)
ben leinfelder

09/07/2010

04:30 PM Revision 5543 (metacat): separate the class and the ontology from the the URI for easier reading. putting them in a table also helps
ben leinfelder
03:49 PM Revision 5542 (metacat): include links from annotation to the data package metadata
ben leinfelder
03:06 PM Revision 5541 (metacat): include stylesheet to display annotation document on it's own (in addition to within a resultset)
ben leinfelder
02:40 PM Revision 5540 (metacat): include the column name that the measurement is mapped to
ben leinfelder
11:39 AM Revision 5539 (metacat): list the currently registered ontologies (in case someone wants to unregister them?)
ben leinfelder
10:06 AM Revision 5538 (metacat): rearrange the ontology registration page - bioportal-hosted ontologies come first
ben leinfelder

09/06/2010

04:50 PM Revision 5537 (metacat): include dropdown of all bioportal ontologies - you can choose to register or unregister them with metacat for annotation-based searching. perhaps not the most elegant workflow, but better than having to manually collect the URIs and URLs.
ben leinfelder

09/03/2010

04:53 PM Revision 5536 (metacat): include annotation display in the search results - NOTE using XPath 2.0 function for accessing the ontology URIs that are included as namespaces in the annotation. adding Saxon jar for this.
ben leinfelder

09/01/2010

02:19 PM Revision 5535 (metacat): include a page for [un]registering ontologies with the ontology manager in the semtools plugin
ben leinfelder

08/31/2010

02:29 PM Revision 5534 (metacat): minor upgrade to commons-logging (1.0.3->1.0.4)
ben leinfelder

08/30/2010

04:34 PM Revision 5533 (metacat): basic query can be issued and includes:
-match any/all
-from same observation
-for Entity, Characteristic, Standard, Protocol, Measurement
ben leinfelder

08/28/2010

09:21 PM Revision 5532 (metacat): use same xercesImpl as geoserver (2.4)
ben leinfelder
07:28 PM Revision 5531 (metacat): upgrade to xalan 2.7 from 2.5.1 (geoserver was using 2.7 already)
ben leinfelder

08/27/2010

02:59 PM Revision 5530 (metacat): upgrade commons-collections (3.2) and commons-lang (2.5) - avoid conflicts with semtools plugin that requires these newer jars.
ben leinfelder
02:29 PM Revision 5529 (metacat): upgrade the log4j jar - reduces the duplicate jars to wade though in the build process
ben leinfelder
02:24 PM Revision 5528 (metacat): don't include the semtools plugin in the default config
ben leinfelder
02:20 PM Revision 5527 (metacat): remove chad's local changes (server, db, etc) - but preserve the D1 config values that were added
ben leinfelder
12:27 PM Revision 5526 (metacat): new values for mets namespace
berkley
11:27 AM Revision 5525 (metacat): added METS schemas to db scripts
berkley
11:20 AM Revision 5524 (metacat): added METS schema to the catalog
berkley
11:09 AM Revision 5523 (metacat): moved the dataone types to the metacat.properties file
berkley
08:27 AM Revision 5522 (metacat): updated for new dataone jars
berkley
08:25 AM Revision 5521 (metacat): changes to work with new dataone jars
berkley
08:25 AM Revision 5520 (metacat): removing old service api jar
berkley
08:24 AM Revision 5519 (metacat): new dataone jars
berkley
05:10 PM Revision 5518 (metacat): include MetacatHandlerPlugin interface so that other projects [semtools] can extend the actions handled by Metcat without editing the codebase directly. The SemtoolsPlugin is the prototype for this and can be registered using the Metacat admin interface. Note that the plugin implementation class and supporting jars must be included in the webapp in order for the request to be handled correctly (the semtools build is injecting these as part of it's build process).
ben leinfelder

08/26/2010

02:43 PM Revision 5517 (metacat): include 1.9.3 upgrade script in trunk
ben leinfelder
12:55 PM Revision 5516 (metacat): updated folder name for schemas
berkley
10:40 AM Revision 5515 (metacat): added explicit 200 codes to ResourceHandler
berkley

08/25/2010

02:43 PM Revision 5514 (metacat): use localhost as defaults for the properties
ben leinfelder
02:39 PM Revision 5513 (metacat): print the workflow server name
ben leinfelder
11:33 AM Revision 5512 (metacat): added better logging and http code setting
berkley
 

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