Activity
From 04/21/2014 to 05/20/2014
05/20/2014
- 04:11 PM Revision 8792 (metacat): prevent js scriptlets from running when we return error messages to the client by escaping any potentially harmful xml blocks. https://projects.ecoinformatics.org/ecoinfo/issues/6224
- 04:09 PM Revision 8791 (metacat): allow updates to all doi: prefixes - realized we are already restricting to specific replica servers when updating these. worst case is we try to update a registration for which we are not the owner. https://projects.ecoinformatics.org/ecoinfo/issues/6440
- 04:08 PM Revision 8790 (metacat): show the SM and ORE generation buttons even if they have not registered/configured dataone. many potential MNs want to see their generated SM _before_ registering (and we want them to too!).
- 10:40 AM Revision 8789 (metacat): restrict DOI updates to DOIs that match our server shoulder -- may consider opening this up to any "doi:" prefix if this is too restrictive. https://projects.ecoinformatics.org/ecoinfo/issues/6440
05/19/2014
- 02:21 PM Revision 8788 (metacat): use separate surName and givenNames to lookup ORCIDs.
- 01:17 PM Revision 8787 (metacat): Changed errors in the ORE model expansion metacat documentation diagrams
05/16/2014
- 03:13 PM Revision 8786 (metacat): Describe the primary data resource in the derived resource RDF
- 10:03 AM Revision 8785 (metacat): Create a derived data and metadata in the OrePackageTest
05/15/2014
- 03:17 PM Revision 8784 (metacat): all full-text queries for ORCID, but it isn't that great because we might have a"PISCO" creator that shows us in may different orcid profiles...false matches.
- 11:55 AM Revision 8783 (metacat): correct glaring erros -- still needs to be honed, but at least it runs without NPE and Jena/foresite errors
- 11:29 AM Revision 8782 (metacat): stub for testing ORE augmentation - this generates an ORE, adds a "wasDerivedFrom" triple and saves to Metacat MN for indexing. https://projects.ecoinformatics.org/ecoinfo/issues/6548
- 10:27 AM Revision 8781 (metacat): include ORE formatId as handled by the RDF subprocessor and index prov:wasDerivedFrom field where it exists in the RDF model. https://projects.ecoinformatics.org/ecoinfo/issues/6548
- 09:34 AM Revision 8780 (metacat): expand the sparql queries to include dcterms:identifier
05/14/2014
- 02:09 PM Revision 8779 (metacat): Text changes to ORE docs
- 01:22 PM Revision 8778 (metacat): Add documentation for the ORE model expansion for derived data
- 12:04 PM Revision 8777 (metacat): use HttpClient to query orcid so I can easily set headers and such -- getting 503s from their production server when I test on dev.nceas...odd
- 11:43 AM Revision 8776 (metacat): adjust tests for production service -- more "real" information shows additional return values from the query.
- 09:18 AM Revision 8775 (metacat): switch to the production ORCID server for looking up orcid matches for our creators.
- add test to summarize how many creator matches we can actually find. https://projects.ecoinformatics.org/ecoinfo/issu...
05/13/2014
- 03:36 PM Revision 8774 (metacat): use a non-public rightsHolder for both EML and Annotation test documents now that the RDF subprocessor checks each annotation to see that it came from a user that as write permission for the object being annotated.
- 03:34 PM Revision 8773 (metacat): test for update using the updated EML file, not the original. Also add the SM to the shared map so that the indexing process can consult SM.accessPolicy when indexing annotations that assert things about those test documents.
- 03:32 PM Revision 8772 (metacat): ignore the metacat/solr comparator tests - they are one-offs.
- 03:31 PM Revision 8771 (metacat): change the hazelcast group name to be the default "metacat" instance so that the metacat-index tests pass without additional local configuration, at least when running a default metacat deployment.
05/12/2014
05/09/2014
05/08/2014
- 04:25 PM Revision 8768 (metacat): process all the returned annotation suggestions until we find one that is appropriately located in the subclass hierarchy for the given superclass.
- 04:23 PM Revision 8767 (metacat): use in-memory TDB dataset for querying annotations for indexing -- this comes with the same reasoning capabilities as the directory-based one, but has the benefit of not filling the directory with triples that will not be used again. prepping for d1 AHM
05/07/2014
- 11:16 PM Revision 8766 (metacat): pass around the object file path rather than the data stream so that multiple subprocessors can index the same object and not consume the stream before it gets to the next one. In preparation for extending the assertions stored in OREs. https://projects.ecoinformatics.org/ecoinfo/issues/6548
- 11:12 PM Revision 8765 (metacat): when indexing annotations directly, just use an in-memory triple store rather than TDB since we remove each graph as it is processed (and my TDB instance would get into the multi-GB range with a few runs, even if I removed the old models)
05/05/2014
05/02/2014
04/30/2014
- 03:47 PM Revision 8762 (metacat): add 'test' for indexing annotations without actually storing the RDF of the generated annotation.
- 03:46 PM Revision 8761 (metacat): only allow multiple values for multi-valued fields....
- 01:02 PM Revision 8760 (metacat): Add admin service to update DOI registrations by specifying a list of formatIds or DOIs, or update all.
04/29/2014
- 05:21 PM Revision 8759 (metacat): use new method to override the CN URL when constructing a CNode instance. see https://redmine.dataone.org/issues/5142
- 04:55 PM Revision 8758 (metacat): use newer httpclient library so that Jena's dependency is met - this goes all the way back to d1_common/libclient needing to pull in the newer library.
- 04:54 PM Revision 8757 (metacat): first pass at direct EML->semantic index method. Still produces an RDF model, but does not persist it in Metacat, only in the triplestore. Allows us to re-run without adding stale RDF to the MN store.
- 04:52 PM Revision 8756 (metacat): allow multivalued fields to be indexed using the "fields" pass through.
- 04:47 PM Revision 8755 (metacat): Remove the attribute disable from the update button if it has been submitted.
- 03:31 PM Revision 8754 (metacat): The image which has the default values.
- 03:13 PM Revision 8753 (metacat): Add a new screen shot which contains the cn url.
04/28/2014
- 04:54 PM Revision 8752 (metacat): Localized the file which doesn't have the bean for dataUrl.
- 03:38 PM Revision 8751 (metacat): Add the cn url.
- 03:37 PM Revision 8750 (metacat): Add the text field for the cn url.
- 03:30 PM Revision 8749 (metacat): Store the cn url in the backup.
04/24/2014
- 01:28 PM Revision 8748 (metacat): switch to use FIleUpload instead of O'Reilly COS library for handling chunked file uploads. https://projects.ecoinformatics.org/ecoinfo/issues/6517
- 01:26 PM Revision 8747 (metacat): forgot to check in the actual class: first pass at allowing admins to update DOI registration. This only acts on EML objects at the moment and is meant to illustrate one mechanism for updating the DOIs. https://projects.ecoinformatics.org/ecoinfo/issues/6530
04/23/2014
- 12:35 PM Revision 8746 (metacat): first pass at allowing admins to update DOI registration. This only acts on EML objects at the moment and is meant to illustrate one mechanism for updating the DOIs. https://projects.ecoinformatics.org/ecoinfo/issues/6530
- 10:19 AM Revision 8745 (metacat): correct the ORE lookup query syntax and add junit assertion to check that it continues to function as expected. https://projects.ecoinformatics.org/ecoinfo/issues/6529
04/22/2014
- 03:38 PM Revision 8744 (metacat): index the ORE after we submit the metadata for indexing. https://projects.ecoinformatics.org/ecoinfo/issues/6520
- 11:43 AM Revision 8743 (metacat): include BioPortal lookup for Entity matches using the data table description. TODO: only associate measurements to the entity observation if they apply.
04/21/2014
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