Metacat

Make resultset more data package centric

select the tree node when exact match is found

check for exact class match when typing into search term - if there is one, then select it as the chosen term

always open the top level node of the tree when it loads

do not show visual indication of "focused" tree - it looks random because it mostly is (at least when refeshing it with the current active domain - the calls are all asynchronous so we don't ever really know which one will be created last and therefore gain the focus)

load search results when page first loads (browsing - no query constraints)

remove special ">>" character from style sheet
use absolute path to the spinner animated gif

include busy spinner when loading search results

using div tags for the search results now (with some tables too)

commit before trying div-only resultset

hide/show search result details for each matched row.

-use a tab for search options
-search results are in their own container now
-jquery ui and semtools css share same corner radius
-removed form-based "link" in resultset xsl

use jquery UI tabs to separate the Measurement criteria from E,C,P

-"Clear" button actually clears the form and refreshes the search results w/o constraints
-active domain check boxes are honored when refreshing active domain after selection is made in a different tree

"remember" selected/opened nodes when active domain is filtered on click. also using separate cookies for each tree so that it can remember it's state on page reload.

refresh the other trees with active domain when selection is made.
TODO: remember last selected node in the tree and open the tree to that node

asynchronously load search results after each tree selection event

add checkbox for active domain pruning on each tree.

prune the search tree - keep parents and children of matched nodes

set the selected concept as the value in the search field

remove bioportal search fields

include scroll bars for the jsTrees

no more aqua for search results

add search box for finding an entry in the tree

include jsTree for navigating the ontology hierarchy when making class selections for the search

comment out debugging alert

use SERVLET_URL not fred

use jQuery to build active domain selections

starting to filter by active domains. still request-based, but would like to make asynchronous calls when populating the fields.

allow default style to be used for the registry (added login mapping)

look up the active annotation classes

browse/search/madlib hybrid sample

use newer SBC-ish style for the default skin

use newer SBC-ish style for the default skin

correctly set the map location based on organizationScope

correctly set the organizationScope from the request value - filters the search results by location

use <p> consistently when providing a tooltip for the full class URI

number of changes:
-list measurements across the screen under their observation
-use title attributes for full ontology class URI, only show full URI for the entity class since there is horizontal room
-make the annotation box more compact and intuitive for both screens (details and search results)

make DP title bold in result set

nest annotation groupings nicely for each obs/meas

include nesting borders

integrate Annotation in resultset better

place annotation information in the same cell as the data package title/id

include content in a wrapper div for margins

comment out debugging alert()

do not make hyperlinks extra bold

reduce white space

include some gray in the paragraphs

use "Myriad..." fonts, then cascade down to Arial, sans... Lifted from BioPortal L+F

only show that an annotation exists in the resultset, not the full details

make the header hyperlinks bold

reduce header font sizes

wrap content in div for margins
add bottom margin on header

include clearer font [size]
add leaf at right

use light grey for backgrounds
dark grey for links

don't use green for links

include new graphic header for semtools skin.
adjust css to fit better

include header/footer like in the old JS-based template

do away with the "eml-common.xsl" - it's not really worth it in terms of being able to customize for each skin

use sbclter css

use shared style sheets for rendering eml. this is sbclter/pisco-like

consolidate shared stylesheets - no differences between 2.0.1 and 2.1.0 directories

removing unused search pages (leftover from 'default' skin copy)

separate the class and the ontology from the the URI for easier reading. putting them in a table also helps

include links from annotation to the data package metadata

include stylesheet to display annotation document on it's own (in addition to within a resultset)

include the column name that the measurement is mapped to

list the currently registered ontologies (in case someone wants to unregister them?)

rearrange the ontology registration page - bioportal-hosted ontologies come first

include dropdown of all bioportal ontologies - you can choose to register or unregister them with metacat for annotation-based searching. perhaps not the most elegant workflow, but better than having to manually collect the URIs and URLs.

include annotation display in the search results - NOTE using XPath 2.0 function for accessing the ontology URIs that are included as namespaces in the annotation. adding Saxon jar for this.

include a page for [un]registering ontologies with the ontology manager in the semtools plugin

basic query can be issued and includes:
-match any/all
-from same observation
-for Entity, Characteristic, Standard, Protocol, Measurement

include bioportal widgets, at least for an example.
oboe-sbc and oboe are both registered as tests.

map the eml 2.1.0 documents to be rendered by the correct (existing) stylesheet.

Merge 1.9.3 branch to the trunk.

merge 1.9.3 change to include karxml 2.1 documents in search/rendering

remove "indus" urls

adding dataone to the login org choice for the dev skin

starting point for semtools skin. augmenting default skin with Annotation documents.
not yet semantically enhanced search capabilities, but you can see a listing of both EML and Annotations on the server.

Commit the change for Madhusudan Gujral from java.net.URL url = new java.net.URL;
to java.net.URL url = new java.net.URL;

Fixed bug the download link didn't work.

Add a mapping between kar xml namespace and karxml.xsl.

Add a style sheet to transform kar xml document.

Change the search query according to the karxml change.

Merge 1.9.2 changes back into the trunk

Populate esa home links with skin property value

change dropdown select event to work on IE.

Fix main cross browser gui compatibility issues in sanparks tpc skin.

Fix main cross browser gui compatibility issues in sanparks tpc skin.

remove the "optional" tip since it is not currently optional

add parc-moderators to config.username

remove registry.config.username value

I've removed the value for the PARC registry.config.site property since it isn't appropriate to this skin, and causes the registry CGI to produce two organization creator elements with the same value.

hard code parc home url

Redirect data.palmyraresearch.org to parc skin

I've replaced hard-coded URL strings in the PARC skin files with their appropriate variables in JSP, TT2, and XSL.

I'm adding the spatial support files for the PARC skin. At the moment, the spatial option in the skin is not being used, but these files have been modified slightly from the NCEAS skin version in branding only.

I've added in the XSL stylesheets for the PARC skin. The parc, parc-eml, parc-common and login stylesheets have been changed slightly for PARC branding.

I'm adding the settings and map JSPs. These are placeholder files since the map is not used in the PARC skin, and the settings file merely import common settings for the skin, but doesn't modify any of the interface settings.