| Revision:

# Date Author Comment
5665 11/23/2010 04:18 PM ben leinfelder

asynchronously load search results after each tree selection event

5664 11/23/2010 11:54 AM ben leinfelder

add checkbox for active domain pruning on each tree.

5663 11/23/2010 09:34 AM ben leinfelder

prune the search tree - keep parents and children of matched nodes

5662 11/22/2010 06:34 PM ben leinfelder

set the selected concept as the value in the search field

5661 11/22/2010 04:37 PM ben leinfelder

remove bioportal search fields

5660 11/22/2010 04:25 PM ben leinfelder

include scroll bars for the jsTrees

5659 11/19/2010 04:42 PM ben leinfelder

no more aqua for search results

5658 11/19/2010 04:06 PM ben leinfelder

add search box for finding an entry in the tree

5656 11/19/2010 03:06 PM ben leinfelder

include jsTree for navigating the ontology hierarchy when making class selections for the search

5635 11/09/2010 02:47 PM ben leinfelder

comment out debugging alert

5634 11/09/2010 02:27 PM ben leinfelder

use SERVLET_URL not fred

5633 11/09/2010 12:47 PM ben leinfelder

use jQuery to build active domain selections

5632 11/08/2010 05:25 PM ben leinfelder

starting to filter by active domains. still request-based, but would like to make asynchronous calls when populating the fields.

5618 10/15/2010 10:51 AM ben leinfelder

allow default style to be used for the registry (added login mapping)

5604 10/07/2010 01:33 PM ben leinfelder

look up the active annotation classes

5602 10/07/2010 11:51 AM ben leinfelder

browse/search/madlib hybrid sample

5601 10/06/2010 02:55 PM ben leinfelder

use newer SBC-ish style for the default skin

5600 10/06/2010 11:46 AM ben leinfelder

include css classes for skins (like default and semtools) that use the "subGroup" class

5599 10/06/2010 11:05 AM ben leinfelder

use newer SBC-ish style for the default skin

5598 09/28/2010 03:11 PM ben leinfelder

correctly set the map location based on organizationScope

5597 09/28/2010 03:09 PM ben leinfelder

correctly set the organizationScope from the request value - filters the search results by location

5594 09/23/2010 02:39 PM ben leinfelder

use <p> consistently when providing a tooltip for the full class URI

5593 09/23/2010 02:35 PM ben leinfelder

number of changes:
-list measurements across the screen under their observation
-use title attributes for full ontology class URI, only show full URI for the entity class since there is horizontal room
-make the annotation box more compact and intuitive for both screens (details and search results)

5592 09/23/2010 02:33 PM ben leinfelder

make DP title bold in result set

5591 09/23/2010 01:07 PM ben leinfelder

nest annotation groupings nicely for each obs/meas

5590 09/23/2010 12:40 PM ben leinfelder

include nesting borders

5589 09/23/2010 12:24 PM ben leinfelder

integrate Annotation in resultset better

5588 09/23/2010 12:12 PM ben leinfelder

place annotation information in the same cell as the data package title/id

5587 09/23/2010 11:56 AM ben leinfelder

include content in a wrapper div for margins

5586 09/23/2010 11:54 AM ben leinfelder

comment out debugging alert()

5585 09/23/2010 11:52 AM ben leinfelder

do not make hyperlinks extra bold

5584 09/23/2010 11:51 AM ben leinfelder

reduce white space

5583 09/23/2010 11:51 AM ben leinfelder

include some gray in the paragraphs

5581 09/23/2010 11:37 AM ben leinfelder

use "Myriad..." fonts, then cascade down to Arial, sans... Lifted from BioPortal L+F

5578 09/22/2010 05:00 PM ben leinfelder

only show that an annotation exists in the resultset, not the full details

5576 09/22/2010 11:23 AM ben leinfelder

make the header hyperlinks bold

5575 09/22/2010 11:07 AM ben leinfelder

reduce header font sizes

5574 09/22/2010 10:59 AM ben leinfelder

wrap content in div for margins
add bottom margin on header

5573 09/22/2010 10:58 AM ben leinfelder

include clearer font [size]
add leaf at right

5571 09/22/2010 10:08 AM ben leinfelder

use light grey for backgrounds
dark grey for links

5570 09/22/2010 09:49 AM ben leinfelder

don't use green for links

5569 09/21/2010 04:50 PM ben leinfelder

include new graphic header for semtools skin.
adjust css to fit better

5567 09/21/2010 02:30 PM ben leinfelder

only surround main dataset with border to avoid a weird border artifact when displaying sub-groups of the eml package

5566 09/21/2010 02:29 PM ben leinfelder

include header/footer like in the old JS-based template

5565 09/21/2010 01:08 PM ben leinfelder

do away with the "eml-common.xsl" - it's not really worth it in terms of being able to customize for each skin

5564 09/21/2010 12:51 PM ben leinfelder

use sbclter css

5563 09/21/2010 12:34 PM ben leinfelder

use shared style sheets for rendering eml. this is sbclter/pisco-like

5562 09/21/2010 12:31 PM ben leinfelder

consolidate shared stylesheets - no differences between 2.0.1 and 2.1.0 directories

5561 09/21/2010 12:31 PM ben leinfelder

consolidate shared stylesheets - no differences between 2.0.1 and 2.1.0 directories

5560 09/21/2010 12:29 PM ben leinfelder

consolidate shared stylesheets - no differences between 2.0.1 and 2.1.0 directories

5558 09/21/2010 11:03 AM ben leinfelder

remove duplicate "attributeindex" parameter

5544 09/08/2010 02:32 PM ben leinfelder

removing unused search pages (leftover from 'default' skin copy)

5543 09/07/2010 04:30 PM ben leinfelder

separate the class and the ontology from the the URI for easier reading. putting them in a table also helps

5542 09/07/2010 03:49 PM ben leinfelder

include links from annotation to the data package metadata

5541 09/07/2010 03:06 PM ben leinfelder

include stylesheet to display annotation document on it's own (in addition to within a resultset)

5540 09/07/2010 02:40 PM ben leinfelder

include the column name that the measurement is mapped to

5539 09/07/2010 11:39 AM ben leinfelder

list the currently registered ontologies (in case someone wants to unregister them?)

5538 09/07/2010 10:06 AM ben leinfelder

rearrange the ontology registration page - bioportal-hosted ontologies come first

5537 09/06/2010 04:50 PM ben leinfelder

include dropdown of all bioportal ontologies - you can choose to register or unregister them with metacat for annotation-based searching. perhaps not the most elegant workflow, but better than having to manually collect the URIs and URLs.

5536 09/03/2010 04:53 PM ben leinfelder

include annotation display in the search results - NOTE using XPath 2.0 function for accessing the ontology URIs that are included as namespaces in the annotation. adding Saxon jar for this.

5535 09/01/2010 02:19 PM ben leinfelder

include a page for [un]registering ontologies with the ontology manager in the semtools plugin

5533 08/30/2010 04:34 PM ben leinfelder

basic query can be issued and includes:
-match any/all
-from same observation
-for Entity, Characteristic, Standard, Protocol, Measurement

5509 08/23/2010 12:37 PM ben leinfelder

include bioportal widgets, at least for an example.
oboe-sbc and oboe are both registered as tests.

5504 08/19/2010 04:55 PM ben leinfelder

map the eml 2.1.0 documents to be rendered by the correct (existing) stylesheet.

5501 08/13/2010 01:50 PM Jing Tao

Merge 1.9.3 branch to the trunk.

5492 08/12/2010 11:31 AM ben leinfelder

merge 1.9.3 change to include karxml 2.1 documents in search/rendering

5476 08/04/2010 12:10 PM ben leinfelder

remove "indus" urls

5438 07/20/2010 03:56 PM berkley

adding dataone to the login org choice for the dev skin

5385 06/11/2010 05:00 PM ben leinfelder

starting point for semtools skin. augmenting default skin with Annotation documents.
not yet semantically enhanced search capabilities, but you can see a listing of both EML and Annotations on the server.

5372 05/25/2010 05:15 PM Jing Tao

Commit the change for Madhusudan Gujral from url = new;
to url = new;

5367 05/18/2010 04:27 PM Jing Tao

Fixed bug the download link didn't work.

5361 05/17/2010 03:36 PM Jing Tao

Add a mapping between kar xml namespace and karxml.xsl.

5360 05/17/2010 03:34 PM Jing Tao

Add a style sheet to transform kar xml document.

5357 05/14/2010 05:57 PM Jing Tao

Change the search query according to the karxml change.

5354 05/13/2010 04:28 PM Jing Tao

Change the return type from kar to the namespace.

5311 04/14/2010 11:31 AM daigle

Merge 1.9.2 changes back into the trunk

5202 01/27/2010 09:51 AM daigle

Populate esa home links with skin property value

5187 01/07/2010 01:37 PM daigle

change dropdown select event to work on IE.

5185 01/06/2010 02:05 PM daigle

Fix main cross browser gui compatibility issues in sanparks tpc skin.

5184 01/06/2010 02:05 PM daigle

Fix main cross browser gui compatibility issues in sanparks tpc skin.

5183 01/06/2010 02:03 PM daigle

Remove commas from the end of lists because they break IE

5182 01/06/2010 11:41 AM ben leinfelder

remove the "optional" tip since it is not currently optional

5178 01/05/2010 04:07 PM ben leinfelder

use @class attribute for path queries rather than @name

5164 12/18/2009 01:22 PM daigle

add parc-moderators to config.username

5163 12/10/2009 12:59 PM Chris Jones

I've added the PARC and PISCO organizations to the delete and confirm form templates for the data registry application.

5155 12/08/2009 09:23 AM daigle

remove registry.config.username value

5147 12/02/2009 07:22 AM Chris Jones

I've removed the value for the PARC property since it isn't appropriate to this skin, and causes the registry CGI to produce two organization creator elements with the same value.

5146 12/01/2009 10:15 AM daigle

hard code parc home url

5145 12/01/2009 10:03 AM daigle

Redirect to parc skin

5144 11/30/2009 11:08 AM Chris Jones

I've added the PARC organization to the login form template.

5143 11/30/2009 11:02 AM Chris Jones

I've replaced hard-coded URL strings in the PARC skin files with their appropriate variables in JSP, TT2, and XSL.

5142 11/30/2009 09:58 AM Chris Jones

This updates the Registry login form to handle PARC logins. I've changed the template to load the PARC header and footer if the cfg = parc.

5136 11/23/2009 10:05 AM Chris Jones

I'm adding two PARC-specific templates to the CGI templates directory. This is a temporary addition, since these templates should reside in the PARC skin. However, the NCEAS skin has templates in this location as well, and all four files will be relocated once bug #4573 has been resolved where the register and ldapweb CGIs change.

5135 11/23/2009 09:49 AM Chris Jones

I'm adding the spatial support files for the PARC skin. At the moment, the spatial option in the skin is not being used, but these files have been modified slightly from the NCEAS skin version in branding only.

5134 11/23/2009 09:47 AM Chris Jones

I've added in the XSL stylesheets for the PARC skin. The parc, parc-eml, parc-common and login stylesheets have been changed slightly for PARC branding.

5133 11/23/2009 09:44 AM Chris Jones

I'm adding the settings and map JSPs. These are placeholder files since the map is not used in the PARC skin, and the settings file merely import common settings for the skin, but doesn't modify any of the interface settings.

5132 11/23/2009 09:41 AM Chris Jones

These are the minimal images used in the PARC skin layout. The research banner comes from the research section of the PARC website.

5131 11/23/2009 09:39 AM Chris Jones

I've added the PARC CSS file, which uses colors and images found at the PARC website.

5130 11/23/2009 09:37 AM Chris Jones

These are the index files for the PARC skin. The html file provides the standard redirect to the JSP. The JSP has been PARC branded, and the layout has changed slightly to work with the website layout (e.g. some navigation links have been removed).

5129 11/23/2009 09:34 AM Chris Jones

Here are the three javascript libraries associated with the PARC skin. The only real changes are in the search.js file, where metacat searches have absolute XPaths in the search criteria. The return fields remain as relative XPaths to be consistent with the rendering code for the skin.