add connection serial number where it was missing.
Add ability to schedule daily, weekly and monthly jobs.
Format and add comments.
add getaccesscontrol and setaccess api calls
Handle the case of trying to insert a conflicting permission order for a document
move dbconnection object out of base class and create it for each db access so it can be released
Add success message to metacat response for setaccess action
handle multiple <principal> elements in the allow/deny blocks
Verify we are in the permission and principal sections before setting values on dao object.
Use OR to add permissions, not AND
Change access section in getaccesscontrol and getdocumentinfo apis to be more eml 2.1.0 compliant. Add a block access option to setaccess api.
change AccessControlForSingleFile to only be instantiated for one file. move ACL methods to AccessControlForSingleFile. Change format of access sections returned to EML 2.1.0.
Removed some old commented out code
Remove unneeded references to Timer
SMS-related addition: retrieve docids for a given doctype
QueryTerm.java will produce an incorrect SQL statement when there is an attribute in the XPath being used to search on. Regardless of the presence of the attribute, the clause:
(SELECT nodeid FROM xml_index WHERE path LIKE " + "'" + path + "') "
would be added to the query....
Create access dao and centralized db access classes. Update create access code to combine access records for principal/doc/accesstype when multiple exist.
Move access control source to it's own directory.
Add ability for doc owner to add user access to workflows.
Add authorization check before scheduling a job in the workflow scheduler
Change RequestUtil forwardRequest() method to throw MetacatUtilException.
Add authorization functionality
Change sanparks skin to log in with browser session instead of metacat client session so session can be validated on other pages.
Add user name to SessionData object
use arguments for the main() method - hardcoded URLs and test docids are poor form
return InputStream instead of Reader in the MetacatClient read() and readInlineData() methods. Can now handle binary datahttp://bugzilla.ecoinformatics.org/show_bug.cgi?id=4432
Add session validation to metacat tpc and workflow scheduler. Fix sanparks skin session management so it always uses the logged in session id.
Make some error messages more understandable
add performance debugging statements for dataquery action
remove web directory
Remove the recently created metacat web servlet
change name of workflowjobid parameter to be workflowjobname which is more accurate
change pw.println to print to remove newline at end of url
Add unshedulejob to base class
Add session Validation action and session timeout functionality.
Fix spelling in debug statement
Added workflow scheduler directory with supporting files
Make properties handlers implement an interface so you can use configurable or non-configurable properties.
Change location of PropertyService to properties directory
Persist skin properties across installations
Change MetaCatVersion to MetacatVersion
Rename MetaCat to Metacat
Move document specific utilities to DocumentUtil from MetacatUtil. This makes it easier to define a layer between the core metacat services and the rest of the code.
Bug 3835: Design and implement OAI-PMH compliant harvest subsystem: * Remove import of deleted class
Bug 3835: Design and implement OAI-PMH compliant harvest subsystem: * Add documentation files to the 'docs/dev/oaipmh' directory. * Delete two obsolete files. * Modify class description comment in MetacatRecordFactory.java
Bug 3835: Design and implement OAI-PMH compliant harvest subsystem. Develop harvester component of the OAI-PMH harvester/provider pair. * Terminate harvest if login failed. * Add runHarvester.sh shell script
Bug 3835: Design and implement OAI-PMH compliant harvest subsystem. Develop harvester component of the OAI-PMH harvester/provider pair.
Updated comments to more accurately reflect the API
Fix references to db classes that were moved and refactoring missed.
Create database and shared directories for database management code and shared code respectively.
Create replication directory. Move replication code there. Use log4j for replication logging (rollingfileappender). Beef up replication logging and error control.
Add the ability to delete a scheduled workflow (move status to deleted in database)
Added end time to workflow scheduler.
Propagate the kar id throughout the configuration screens.
Populate admin login user dropdown with configured admins
Input date formatting changes
Use context url instead of server IP. Server IP breaks if the server does not have an externally facing IP (behind a proxy server)
Implement fix for Bug #4245: Harvester command line scripts don't execute.
Bug 3835: Design and implement OAI-PMH compliant harvest subsystemCheck to see whether metacat database has changed since last refresh date, and if it has, refresh catalog objects in memory.
Fix issue where every scheduled job gets the same parameters.
Created new AuthStub class to always authenticate.
Implement stop method in services. Stop all services when shutting down metacat. This primarily keeps scheduler from hanging with open threads.
Catch exception that was leaving shape files open. Roll back transaction in this case.
Catch exception when schema exists in db but not on disk. Try to get the schema before throwing exception
remove this file. This is now handled in db update scripts.
Add upgrade scripts for 1.9.2 (scheduler tables)
Handle extracting a docid from a urn (lsid) during a read action
Beef up comments
Workflow scheduler and archiving fixes for TPC workflow engine
Added generic scheduler and workflow scheduling functionality.
Add scheduler and workflow schedule functionality
Add archival read funtionality (jar/kar/war files)
Bug 3835: Design and implement OAI-PMH compliant harvest subsystem1. Refactor the 'eml' metadataPrefix into a distinct metadataPrefix value (and corresponding crosswalk class) for each EML version: eml-2.0.0, eml-2.0.1, eml-2.1.0. (In recent VTC discussion, we decided not to add support for the older 'beta' versions of EML 2.0.0.)...
Bug 3835: Design and implement OAI-PMH compliant harvest subsystem1. When building the Metacat OAI-PMH catalog, modify the database query to search only for documents with public read access.2. Change syntax used for identifiers in the repository to LSID format instead of using a URL to a specific repository....
Bug 3835: Design and implement OAI-PMH compliant harvest subsystemAdd support for request parameter "metadataPrefix=eml". This returns EML 2.1.0 records in an OAI-PMH format. EML 2.0.0 and 2.0.1 documents are first transformed to EML 2.1.0 using the eml201to210.xsl stylesheet that is packaged with the EML Utilities.
Begin development for Bug 3835: Design and implement OAI-PMH compliant harvest subsystem
In AuthSession, I've modified the formatOutput() method to include both the email and organization values found in the userInfo array. On successful login(), this changes the returned xml to include <email> and <organization> elements if they exist in the userInfo array. This information is useful to web client applications that need to show login status beyond just the users full name.
remove DataTranspose from core metacat - only used in FIRST skin for this 1.9.1 release
Accidentally removed ACCESS constant declaration. Restored.
Roll back replication user changes. Fix code that converts access levels to integer and to text.
Introduce replication user. Use the fileutil writer methods instead of writing directly.
new datamanager feature!Pivot a result set (rows to columns).Handles simplest case: -single id column (observation)-single pivot column (pivot)
Beef up exception handling from file utilities. Move UtilException to MetacatUtilException to eliminate conflict with similar exception in utility package.
Do not read or write zero length documents to/from disk
Use only one eml common stylesheet directory for all post 2.0.0 beta versions of eml. Point all eml versions to that directory in skin xml files.
Format indexPaths in metacat.properties. Remove from build.properties and build.xml. Move indexPath list getter from MetacatUtil to SystemUtil.
Replace System.out.println statements with logMetacat statements.
Update replication documentation and fix code so that replication log is available.
Separate the concept of a backup file location and a metacat external directory location. These can be totally different.
Fixes include:-Overwriting existing DTDs on the filesystem if they exist and registration in the DB failed-only registering a DTD once
do not include the column name when inserting into an auto-increment column
Make sure and write the shortcut to the backup directory to a directory in the users home.
Allow for backup properties to be written to context based subdirectory of the external configuration directory. This allow multiple instances of metacat to be run side by side.
Change name of writeTempFile to writeTempUploadFile since this instance deals with the temporary upload dir specifically
Added exception to error xml to clarify error to api.