Metacat

organized code for inputstream handling

fixed date problem

add a timer to delete the temp file

removed dependency on InputStreamToOutputStream so that exceptions will be passed correctly.

return the identifier object instead of nothing

made delete serialize the identifier

got getChecksum working. working on delete now. all tests in d1clienttest now pass

changes for new d1 schemas

implemented crud.delete

changed date format a bit to get the parser to like it

implemented describeObject

Bug fix for #5241: OAI-PMH: ListRecords verb returns content containing XML processing instructions.

implemented crud.describe

adding getChecksum method

added milliseconds back onto date format

remove temp files after multipart read

got the streaming mime multipart working

still working on mmp stream parsing

working on integrating streaming mmp into resourceHandler

more work on streaming mmp support

getting closer to a non-memory bound solution for mime multipart de/encoding

fixed a couple bugs with dates and fixed a major bug where metacat was reading the entire document from the database everytime a DocumentImpl instance was created even though it didn't need to

changes for dataone .5 schema updates

updated all exception codes to match spec

fixed task 729

fixed a bunch of small errors, did some reformatting, and fixed a bug that I thought was fixed last week

fixed redmine task 864. Metacat will now download an http:// referenced schema when a reference is put in the xml_catalog table.

fixing redmine task 738

fixing trac bug 828

profiler code for metacat

exception to throw when the sax parse should stop

changed log labels per trac 843

fixed bug 818

updated the metacatpopulator to use the d1 eml parser to create system metadata in a smarter fashion.

better log message

more debugging for objectInfo problem

checking for a null objectformat

checking for a null objectformat

checking for a null objectformat

backtracking

add some error output

add some error output

added a check for bad data into listObjects

commented out a println

updated DB scripts for D1 schemas

changed improper use of getFS() to a /. getFS() should never be used with a URL since it will return \ on windows which is not a valid separator in a URL.

moved the dataone types to the metacat.properties file

updated for new dataone jars

changes to work with new dataone jars

include MetacatHandlerPlugin interface so that other projects [semtools] can extend the actions handled by Metcat without editing the codebase directly. The SemtoolsPlugin is the prototype for this and can be registered using the Metacat admin interface. Note that the plugin implementation class and supporting jars must be included in the webapp in order for the request to be handled correctly (the semtools build is injecting these as part of it's build process).

added explicit 200 codes to ResourceHandler

added better logging and http code setting

fixed bug where the query cache was not getting reset by a REST insert/query combo.

[merged from 1.9.3 branch] security fix: never unregister the "public" user session

re-added some code inadvertently removed

merged with version from 1.9.3 branch to fix bug with character encodings

added a todo

new todos from code review with roger

added TODOs and cleaned up the code a bit

do not read from the inputstream before passing it off to the SAXParser

fixed mime multipart problems so that roger can try to use the d1client

fixed error where insert/update errors were not getting caught as exceptions

fixed bug with logger where localid didn't get appended when inserting a data file

reformatting logs for robert

added another logging statement

added replicate log statements with the guid and localId

fixed update bug I introduced yesterday while fixing replication

hopefully fixed bug with systemmetadata replication

debug statements in dbsaxhandler

still working on getting guid problems fixed with replication

fixed identifier manager problem with getting guid for systememtadaa doc

fixing problems with replication and systemmetadata

set the content type to text/xml for the rest interface

fixed yet another null sessionData bug

Fixed spelling error.

Set content type on listObjects to be XML so that it is recognized by clients.
Reformatted method to use original file conventions.

Reformatted code to fix indenting.

fixed more access control problems. also fixed extraneous white space that was getting put into the listobject output stream

fixed problems with access control on sysmeta

fix for set access bug

fixes for the access control setting for sysmeta

added functionality to set access permissions to system metadata the same as the document that it describes

fixed major bug in replication where the document info was being truncated due to a poorly implemented sax parser

hopefully fixed get bug where session was null

fixing another null auth token bug

changing d1 log format

added code to make sure the localId and guid get added to get and create d1 logs

removing println

fixed more NPE problems with sessionData. hopefully got them all this time

fix for null session bug

hudson tests are now running. needed date conversions. still more work to do with systemmetadata date format.

updated for date format that supports time zones correctly.

changed date comparison to compare to gmt only

fixed NPE with sessionData

added some new error handling to work around this issue https://trac.dataone.org/ticket/706

fixed bug in access control where the sessionid was not correctly passed along so changes of privileges were not being made

fixed bug where null session data was not treated properly.

Correct log warning message - not "Account" but "Accession" number

fixing date formatting and timezone issues

fixed bug with log processing