update documentation to reference Tomcat 7, Java 7 and newer apache config file name conventions. https://projects.ecoinformatics.org/ecoinfo/issues/6855
remove reference to tomcat5.5 in favor of tomcat6. including the "custom" start up script that used the sun jdk -- this can be configured rather than coded into the script.
Add ssl virtualhost. Change non-ssl to work with ssl.
update workers.properties with more standard ajp13 worker name (not used until apt-get install project)
Scripts to support a debian package build