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# Date Author Comment
2245 08/19/2004 06:09 PM sgarg

Merging in changes made in branch 'dataaccess' by Jing Tao.

2240 08/19/2004 11:34 AM sgarg

Added upload functionality to metacat client for upload online data

2238 08/10/2004 03:19 PM Duane Costa

Add warning if default harvest list file is not found on disk.

2237 08/04/2004 12:42 PM Duane Costa

Change relative path to harvestList.xsd schema to allow harvest list editor to run standalone.

2234 07/26/2004 05:49 PM sgarg

Changed path for eml xsd stylesheet

2229 07/23/2004 10:39 AM sgarg

Modified directory name for eml-2.0.x checkouts to match with that in build.xml

2225 07/22/2004 03:32 PM sgarg

Removed some debugging code added in last commit

2224 07/22/2004 03:29 PM sgarg

Added code to read EML2.0.1 into source code.

2223 07/22/2004 02:31 PM sgarg

Made change in the registry so that new documents produced are of eml-2.0.1 standard.
Also made changes in create-registry folder

2222 07/22/2004 02:24 PM sgarg

Added code to make enteries for eml 2.0.1 into the database

2221 07/22/2004 09:10 AM Duane Costa

Improvements to Harvester registration web form.

2203 07/08/2004 10:45 AM Duane Costa

Add diagnostic output

2188 06/23/2004 04:50 PM Jing Tao

Get rid of some useless code.

2187 06/14/2004 03:26 PM Duane Costa

Improve handling of default values.
Call fileNew() if no default Harvest List file is specified.
Improve documentation for default properties.

2184 06/10/2004 03:19 PM Matt Jones

Fixed schema loading scripts to use the new ant token for the EML2 namespace.

2179 06/04/2004 02:25 PM Duane Costa

Add File Validate menu item
Add column to display the row number
Add name of file to the title bar
Load properties from .harvestListEditor in home directory instead
of from metacat.properties

2177 06/03/2004 04:09 PM Duane Costa

Harvest List Editor, a GUI tool for editing Harvest List XML files

2176 06/01/2004 03:48 PM sgarg

Fixed a bug which was introduced because 'eml2namespace' was replaced by 'eml2_0_0namespace' in metacat.properties

2172 05/18/2004 02:25 PM sgarg

Adding a new perl script. Running this script creates a new skin.

2171 05/17/2004 04:36 PM Duane Costa

Store session attributes as username and password for consistency with Metacat

2170 05/14/2004 03:54 PM Duane Costa

Improvements to Harvester registration form

2169 05/14/2004 02:38 PM sgarg

Made initial changes for accepting EML version 2.1.0 in Metacat

2168 05/14/2004 10:53 AM Jing Tao

Revised the api and ecogrid can use it easily.

2167 05/13/2004 01:57 PM Jing Tao

Fixed a bug that couldn't find eml2 data format.

2166 05/12/2004 09:36 AM Duane Costa

Improve Harvester registration login

2165 05/11/2004 06:00 PM Jing Tao

fixed the bug that couldn't assign access rule for the data file come with morpho.

2164 05/10/2004 03:41 PM Jing Tao

Change method accessNumberUsed to static method.

2163 05/07/2004 04:05 PM Jing Tao

Change eml2 to eml200

2162 05/07/2004 03:43 PM Jing Tao

Change the code when Eml parser name changed.

2161 05/07/2004 03:42 PM Jing Tao

New class to replace EmlSAXHandler.

2160 05/07/2004 03:41 PM Jing Tao

Rename this class to Eml200SAXHandler.

2155 05/03/2004 03:59 PM Duane Costa

Integrate Harvester properties with build.properties and metacat.properties.
Eliminate the need for a separate harvester.properties file.
Improve email message to the site to include more summary information.

2152 04/30/2004 08:27 PM sgarg

Fixed bug# 1309. Also put a regex check on ending year and beginning year.

2151 04/30/2004 07:28 PM sgarg

Made changes to fix bug # 1365.

2149 04/30/2004 07:06 PM sgarg

Made changes to fix bug# 1303 and 1367.(Both are related)
Following variables can now be specifieD from the cfg file to control behaviour of the skin: hasKeyword, hasMethod, hasSpatial, hasTaxonomic and hasTemporal. Following two also can be used: spatialRequired and temporalRequired

2148 04/30/2004 11:09 AM sgarg

Made changes to fix bug# 1303 and 1367.(Both are related) - corresponding changes need to be made in tmpl file and testing needs to be done before bugs can be closed.

2144 04/29/2004 11:16 AM sgarg

Made changes to fix 1301. Works fine with eml2 - need to check if works with emlbeta6.

2139 04/28/2004 10:54 AM Duane Costa

Refactored a number of methods to allow for more effective JUnit testing

2138 04/26/2004 04:46 PM sgarg

Made changes to control whether a skin wants to use keywords or not. Keywords probably will be used by all skins alsways. But similar changes can be made for Geographic Coverage or Temporal COverage to control whether a particular section of the insert data template needs to be shown or not. This can be controlled from .cfg file. For example, in nceas.cfg is you define hasKeyword = false, none of the templates will show the keyword part. (Unless, you are using NCEAS skin and you try to modify a document which already has keywords.)

2137 04/26/2004 02:59 PM sgarg

Removed beta6 specific code which is no longer being used.

2136 04/26/2004 02:29 PM sgarg

Removed repetition of code. Also fixed the link to the modified file submitted from responseTemplate

2133 04/22/2004 10:35 AM Duane Costa

Changes to comments

2132 04/19/2004 01:26 PM Duane Costa

Replace Harvester dbDriver property with database property

2130 04/14/2004 06:41 PM sgarg

Added ou also to getprincipal output. So now organizationUnitName is also returned in getprincipal output.

2129 04/14/2004 05:27 PM sgarg

Made changes so that PISCO and NRS trees are also returned in getPrincipals action.

2127 04/14/2004 01:48 PM Duane Costa

Allow user to set frequency to 0 for testing purposes

2126 04/14/2004 01:48 PM Duane Costa

Modify schema location

2121 04/14/2004 11:27 AM sgarg

Fixed getprincipals output. Earlier DNs for LTER were in URL form. Now they appear in DN form.
Earlier:
ldap://knb.lternet.edu:389/DN,base
Now:
DN

Have to make changes so that PISCO and NRS also show up.

2117 04/12/2004 08:20 PM sgarg

Fixed two small bugs.

2116 04/12/2004 04:49 PM sgarg

Made changes in XML that is sent back as result of action=getprincipals. Changes are as following:

1. <authSystem> tag contains organization attribute which specifies organization name
2. <user> tag now has <organization> tag which specifies the organization name of the user. This is being generated as null for LTER as of now.

2115 04/09/2004 04:12 PM sgarg

Perl script for transfering documents from one metacat to another metacat. list_of_docids contains list of names of the documents that will be transfered.

2114 04/09/2004 10:59 AM Duane Costa

Rename url property to defaultDB

2113 04/08/2004 01:49 PM Matt Jones

Added the EventLog functionality to the servlet as action=getlog. Valid parameters are ipAddress, principal, docid, event, start, end. All parameters can be repeated except start and end.

2112 04/08/2004 09:23 AM Duane Costa

Correct minor problems with foreign keys in Harvester tables

2111 04/07/2004 02:31 AM Matt Jones

Partial implementation of a query facility for the access log. Need to fix problems with the date filtering, and tie this into the servlet action when completed and tested.

2110 04/06/2004 08:51 PM Matt Jones

Interim checkin of EventLog reporting structure. Still basically incomplete but compiles.

2109 04/06/2004 03:11 PM Duane Costa

Add three new Harvester tables

2108 04/06/2004 09:34 AM Duane Costa

Omit HARVEST_OPERATION_TABLE and store harvest operations in properties file instead

2106 04/05/2004 04:25 PM Matt Jones

Fixed the returndoctype bug in DBQuery as described in bug 1451. Now,
results are returned even if returndoctype is null, which is the
appropriate behavior.

2105 04/05/2004 09:49 AM Duane Costa

Implement sending email reports to harvest administrator and site administrator

2104 04/02/2004 06:02 PM Matt Jones

Patched to make the date-time value insertion work under oracle. Now it
tests fine under both oracle and postgres. Still need to write an
access/query function.

2102 04/02/2004 01:43 PM Matt Jones

Added additional logging calls for read, upload, insert, update, delete, and
other commands. Now need to get a reporting function working and this
bug 101 will be largely finished.

2101 04/02/2004 11:43 AM Matt Jones

Modified EventLog to eliminate the separate revision column and instead fold
that into the docid string. Log now includes read events, but need to update
the data sent there.

2099 04/02/2004 10:15 AM Matt Jones

Modified SQL scripts to add the new access_log table. I've partially tested this under postgres but have not yet tested under oracle.

2098 04/02/2004 09:13 AM Matt Jones

Reformatted code for readability and consistency.

2097 04/01/2004 10:49 PM Matt Jones

Added javadoc that was missing for the EventLogData class.

2096 04/01/2004 10:40 PM Matt Jones

Added classes for basic event logging support. These classes write log entries to the database connection. Still to do: query the event log, write oracle sql code (postgres is done), possibly allow the log to be archived to a text file, and possibly do the dtabase writes asynchronously via a caching mechanism.

2095 04/01/2004 05:24 PM sgarg

Made change in result tag that is returned in getprincipals action. Replaced userdn with username.

2094 04/01/2004 04:41 PM Matt Jones

Added GPL license text to harvester source files.

2093 04/01/2004 03:40 PM Jing Tao

Fixed a bug the text filed in path xml query maybe splited.

2092 04/01/2004 03:39 PM Jing Tao

Fixed a bug if a document already has index, but now metacat doesn't use index. If you try to delete this one, will cause error.

2091 04/01/2004 03:38 PM Jing Tao

Clean up some code.

2089 03/31/2004 05:49 PM Jing Tao

Revise the handle query and squery method, not finished yet.

2088 03/31/2004 05:48 PM Jing Tao

Add a new transform method.

2087 03/31/2004 05:47 PM Jing Tao

Add a new transferm method for string reader.

2086 03/31/2004 03:23 PM Duane Costa

Implement harvester scheduing capabilities and sending email reports to the Harvester Administrator

2085 03/31/2004 03:19 PM Duane Costa

Validate user input data in registration servlet

2084 03/31/2004 03:18 PM Duane Costa

Improve authorization logic for single file uload servlet

2083 03/31/2004 03:17 PM Duane Costa

Add delete capability to single file upload servlet

2080 03/31/2004 11:45 AM Matt Jones

Set content type properly for getversion action.

2079 03/31/2004 11:42 AM Matt Jones

Added a simple action for finding out the current metacat version. The information is pulled from the property file, so be sure to update the version in the property file before shipping a release.

2078 03/30/2004 04:05 PM Matt Jones

Fixed a bug in the new recursive SQL statements that prevented them from operating on oracle. Now they should work on both oracle and postgres.

2077 03/30/2004 01:36 PM Matt Jones

Reformatted source for readability and conformance.

2076 03/30/2004 01:35 PM Matt Jones

Excluded the update of the xml_index table in insert,update, and delete if the usexmlindex option is set to false.

2075 03/30/2004 10:09 AM Matt Jones

Reformatted DBQuery.java for readability and consistency.

2074 03/30/2004 10:02 AM Matt Jones

Changed printAttributeQuery() to no longer depend on the xml_index table. Now, if useXMLIndex is false, the method will use a recursive query on xml_nodes to match paths instead of using xml_index.

2073 03/29/2004 03:50 PM Matt Jones

Some refactoring of the printExtendedSQL()
methods to eliminate redundancy in the code and
to provide more readable documentation.

2072 03/29/2004 01:59 PM Matt Jones

Moved decision about whether to use xml_index for
query to the metacat.properties as "usexmlindex". Default
is now false. Still have some refactoring to do to remove a
few more uses of the xml_index table.

2069 03/29/2004 11:24 AM Matt Jones

Created new printExtendedSQL function that can get the extended
return fields using only xml_nodes and not xml_index. One
step closer to eliminating the dependence ofn xml_index.

2068 03/26/2004 05:40 PM Matt Jones

Created test class QuerySpecificationTest and started process of removing the xml_index from the QuerySpecification code. Reformatted some classes for readability.

2067 03/26/2004 03:25 PM Matt Jones

Removed the "getdataguide" action as it was always experimental and is no longer used in metacat or morpho.

2066 03/26/2004 02:47 PM Matt Jones

removed the 3 versions of printPackageSQL which are no longer used by metacat. This eliminates some dependency on xml_index.

2063 03/26/2004 02:36 PM Duane Costa

Implement Harvester Registration Servlet

2062 03/26/2004 02:35 PM Duane Costa

Additional scheduling logic

2061 03/25/2004 12:57 PM Duane Costa

Changes to Harvester properties

2060 03/25/2004 12:56 PM Duane Costa

Changes to log entries

2058 03/23/2004 10:26 AM sgarg

Made changes in these three files so that getPrincipal returns back more details about users and groups. Users now contain userDN, user Name and user Email. Groups now contain Group name and Group description. So some function calls which returned single string array earlier now returns multiple string arrays. AuthSession.java called one of these functions - so accordingly changes were made to fix that part of the code.

2057 03/22/2004 10:37 AM sgarg

Fixed a bug which doesn't occur everytime. The bug occurs when lastid in (cfg).lastid is not unique. i.e. there is already a document in the server which has same docid. The earlier algorithm was:

while(not unique){
get accession number;
update accession number written in document; (BUG)...

2056 03/22/2004 08:43 AM sgarg

Added extra parameters (cfg & docid) to be passed on to generic response screen.

2049 03/16/2004 06:57 PM sgarg

made changes so that organization name for the site or project is entered before
any other creater.