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# Date Author Comment
9051 12/31/2014 03:49 PM Jing Tao

Add the code to support the sereis id on isAuthorized and systemMetadataChanged method.

9050 12/30/2014 04:34 PM Jing Tao

Add the code to handle the sid in the delete and archive method.

9048 12/30/2014 02:09 PM Jing Tao

Fixed a bug in comparing two identifiers in the update method.

9047 12/30/2014 11:04 AM Jing Tao

Add a check that the sid shouldn't equals the pid in the update and create method.

9046 12/29/2014 05:10 PM Jing Tao

Add the code the check if the format of the sid is valid in the system metadata.

9045 12/29/2014 05:06 PM Jing Tao

Add the enforcement for the sid in the create method.

9044 12/29/2014 04:26 PM Jing Tao

Enforce the sid requirement in the update method.

9043 12/29/2014 03:03 PM Jing Tao

Check if the identifier is a sid for the v1 update.

9041 12/29/2014 12:23 PM Jing Tao

Add the code to handle the deleted identifier in the checking v1 system metadata existing method.

9040 12/29/2014 11:42 AM Jing Tao

Enforce the mn.getChecksum only to handle an PID.

9038 12/24/2014 11:41 AM Jing Tao

Add the series id to the system metadata.

9037 12/24/2014 09:47 AM Jing Tao

Implement the series id in the getSystemMetadata method.

9036 12/23/2014 04:53 PM Jing Tao

Looking for sid for the method describe.

9033 12/22/2014 02:31 PM Jing Tao

Refactor the code to check a pid exists in the v1 api.

9032 12/19/2014 04:59 PM Jing Tao

Modified the get method to handle the sid in the v2 api.

9030 12/19/2014 03:10 PM Jing Tao

Change a method name to use pid rather than guid.

9026 12/17/2014 04:57 PM Jing Tao

Add the code to get the most recent version of a sid which all pids are obsoleted.

9024 12/16/2014 06:50 PM Jing Tao

Fixed a bug that the method getLocalId swallowed an exception incorrectly in the IdentifierManager.

9023 12/12/2014 04:25 PM Jing Tao

Fixed a bug that some service failure exceptions were handled as the NotFound exception.

9017 12/11/2014 03:24 PM Jing Tao

1. In the identifierExists method, the code to check if the identifier exist on the serial-id fields of the system metadata table.
2. Fixed a bug on the identifierExists - it considered an identifier didn't exist when the determining process threw an exception.

9016 12/10/2014 04:33 PM Jing Tao

Add a method to check if a serial id exists.

9015 12/09/2014 05:03 PM Jing Tao

Add a method to get the pid of the head version of a sid.

9014 12/09/2014 01:10 PM ben leinfelder

add Annotator Store implementation -- pass through to D1 API for the AnnotatorJS API

9012 12/09/2014 08:38 AM ben leinfelder

use 2.5.0 for current DB version

9011 12/02/2014 05:15 PM Jing Tao

Don't remove postgresql 8.4 and 9.1
Don't remove data directory of postgresql 8.4

9009 12/02/2014 02:08 PM ben leinfelder

include person's full name in the JWT returned from /token

8993 11/20/2014 09:21 AM Chris Jones

Merge changes in the 2.4 branch into the trunk for the ORNL Mercury schema support. References https://projects.ecoinformatics.org/ecoinfo/issues/6619.

This schema is maintained by Jim Green () and Ranjeet Devarakonda (). The schema uses a subset of the FGDC 1998 CSDGM elements, along with custom elements specific to the Mercury Metadata web application. Support is included in Metacat for Coordinating Node operations in the DataONE network.

8991 11/20/2014 09:00 AM Jing Tao

Fixed a bug that the reindex of data objects may index an archived data object.

8986 11/19/2014 04:59 PM Jing Tao

Fixed a bug that the solr index of data files doesn't reflect the change of access control.

8983 11/19/2014 12:52 PM ben leinfelder

[merge from 2.4 branch] use solr schema upgrader for 2.4.2 release -- need to replace the solr schema to include geohash fields

8979 11/19/2014 12:20 PM ben leinfelder

add 2.4.2 upgrade scripts so they are available in the 2.5.0 release as well

8977 11/19/2014 12:17 PM ben leinfelder

remove AnnotatorService completely - was moved to cn-index-processor

8972 11/17/2014 09:29 PM ben leinfelder

let metacat-index lookup annotations for indexing rather than the metacat "reindex" action.

8971 11/17/2014 04:30 PM Jing Tao

Add delete log for data objects on CNs.

8964 11/14/2014 11:20 AM ben leinfelder

only index non-empty comment text

8963 11/14/2014 11:13 AM ben leinfelder

index both tags and text from annotateit.org

8961 11/13/2014 05:59 PM ben leinfelder

query by consumerKey until the pid search facets are fully supported on annotateit.org

8960 11/10/2014 02:34 PM ben leinfelder

add JkOptions directive and encoded slash options for dataone and solr query support in the URLs that metacat can get (they were in the -ssl version of this file already)

8959 11/10/2014 02:22 PM Jing Tao

During the replication, the remote content will be saved without alteration.

8953 11/05/2014 01:42 PM ben leinfelder

allow per-document reindexing to be initiated by any user (to support third-party annotations)

8948 10/31/2014 05:36 PM Jing Tao

Write the input stream into the file system without alteration in dataone create and update methods.

8946 10/31/2014 05:09 PM ben leinfelder

look up annotations when reindexing a given pid. still very much a prototype in that we are looking up annotations from an external annotator-store. TODO: add pid filtering to query when annotateit.org supports it (pending upgrade on their site).

8945 10/31/2014 04:07 PM Jing Tao

add the code to install xmlstarlet.

8944 10/30/2014 07:58 PM Jing Tao

Find files of which type is link.

8942 10/28/2014 08:23 PM Jing Tao

Keep /var/lib/postgresql/8.4/main directory.

8941 10/28/2014 04:11 PM Jing Tao

Add the code to stop tomcat and apache.

8940 10/28/2014 04:03 PM Jing Tao

Add the "-y" option to force removing the old postgresql without prompting a y/n question.

8939 10/28/2014 02:07 PM Jing Tao

Restore the database for a gzipped sql file.

8938 10/28/2014 01:35 PM Jing Tao

Added the code to gzip the output file in the dumpall command. This will save disk space.

8937 10/24/2014 03:46 PM Jing Tao

Modified the redirect rules which didn't work.

8936 10/24/2014 02:50 PM Jing Tao

Add the code to add the attribute useHttpOnly='false' to the Context element in the context.xml file.

8935 10/24/2014 01:02 PM Jing Tao

Fixed a bug the code can get the argument from the command line.

8934 10/24/2014 12:47 PM Jing Tao

Added the code to change the permission of the backup file so the postgres user can read it.

8933 10/24/2014 12:24 PM Jing Tao

Added the code to check if the metacat backup file exists.
Added the code "exist 0" at the end of the scripts.

8932 10/24/2014 12:08 PM Jing Tao

Added the .conf to those site files since the new apache server only loads the sites with the extension.

8931 10/24/2014 09:45 AM Jing Tao

Add the code to vacuum the db.

8930 10/23/2014 04:32 PM Jing Tao

Add the code to enable the 8009 port for ajp connection in the server.xml of tomcat7.

8929 10/22/2014 12:29 PM Jing Tao

Added the code to modify the geo data directory in the metacat.properties file.

8928 10/22/2014 11:43 AM Jing Tao

Fixed some bugs to restore postgresql data.

8927 10/21/2014 09:30 PM Jing Tao

Add the code install some components for installing tomcat7

8926 10/21/2014 09:13 PM Jing Tao

Use a variable to replace the hard code.

8925 10/21/2014 07:30 PM Jing Tao

Use the version directly.

8924 10/21/2014 07:28 PM Jing Tao

Fixed a typo.

8923 10/21/2014 07:26 PM Jing Tao

put the date to an output file.

8922 10/21/2014 06:56 PM Jing Tao

A script for vacuum the db.

8921 10/21/2014 06:32 PM Jing Tao

Add a script to move the db from 8.3 to 9.1 base on a dumped file.

8920 10/21/2014 10:58 AM Jing Tao

Use the pg_dumpall command to back up all information of the database.

8919 10/20/2014 07:35 PM Jing Tao

Add the code to backup the cerificate/key of the apache server.

8918 10/20/2014 04:46 PM Jing Tao

Removed the code to write the backup file to a dvd drive.

8917 10/20/2014 02:56 PM Jing Tao

Added the code to copy Metacat and other web applications from the webapps directory in tomcat6 to tomcat7.
It also update the value of deploy.applicationDir in the metacat.properties file as well.

8916 10/20/2014 01:10 PM Jing Tao

Only insert new configuration lines once to the /etc/tomcat7/catalina.properties.

8915 10/20/2014 11:34 AM Jing Tao

Used variables to replace hard code in sed command. Also we have to escape the variables.

8913 10/20/2014 09:42 AM Jing Tao

Used variables to replace the hard code.

8912 10/17/2014 06:15 PM Jing Tao

Add the code to modify the workers.properties file.

8911 10/17/2014 05:13 PM Jing Tao

Fixed typo.

8910 10/17/2014 05:02 PM ben leinfelder

use http://tools.ietf.org/rfc/rfc3023 spec for conformsTo property. use the full xpath for EML dataTable and attribute selectors

8909 10/17/2014 04:49 PM Jing Tao

Add a script to install openjdk 7 and tomcat 7.
It also configures java, javac,keytools and tomcat7.

8903 10/15/2014 04:34 PM Jing Tao

Added the code to inform users the pid was deleted in the NotFound exception.

8901 10/14/2014 06:11 PM Jing Tao

Added the code to check if a not-found object was deleted in the isAuthorized method.

8899 10/14/2014 06:01 PM Jing Tao

Move the code to get the object in front of the method to get the system metadata.

8896 10/14/2014 01:44 PM Jing Tao

Add a utility method for determine if there is a delete event for a given id.

8889 10/10/2014 02:16 PM Jing Tao

Removed the method which had the byte array attribute.

8887 10/10/2014 02:10 PM Jing Tao

Remove the system metadata for data objects.

8884 10/10/2014 02:01 PM Jing Tao

change the way to delete the solr index of a resource map.

8883 10/10/2014 01:23 PM Jing Tao

Backup the /etc/apache2/site-enabled directory.

8882 10/09/2014 04:40 PM Jing Tao

Remove the code to stop/start ldap server.
Change the script name to stop/start tomcat.
Also backup metacat.properties.

8880 10/06/2014 10:32 PM Jing Tao

Replace the operator "=~' by "eq" in comparing the two password fields.

8877 10/06/2014 05:42 PM Jing Tao

dd a new routine to check if the uid has been taken already in the production space during the creation process.

8874 09/23/2014 06:27 PM ben leinfelder

add /token endpoint for annotatorJS/annotateIt.org integration. https://github.com/DataONEorg/sem-prov-design/issues/18

8869 09/18/2014 03:12 PM Jing Tao

Persitence the system metadata object in the memory before deleting it from hazelcast.

8866 09/16/2014 05:18 PM Jing Tao

Add the code to handle the delete of the resource map.

8854 09/12/2014 04:17 PM Jing Tao

Make the delete method work.

8852 09/12/2014 04:03 PM Jing Tao

Make the deleteSystemmetadata method really roll-backable.

8850 09/12/2014 03:56 PM Jing Tao

Add the code to delete systemmetadata.

8846 09/04/2014 03:24 PM Jing Tao

Add the code to delete the records in the xml_accesssubtree table.

8844 09/02/2014 02:07 PM ben leinfelder

use configured auth.base rather than hard-coded dc=ecoinformatics,dc=org. https://projects.ecoinformatics.org/ecoinfo/issues/6592

8842 08/22/2014 05:50 PM Jing Tao

Add a code to check if the pathquery engine is enabled in the checkIndexPaths method.

8829 08/06/2014 01:48 PM ben leinfelder

convert v2 SM to v1 SM for the v1 service call response

8826 08/06/2014 01:09 PM ben leinfelder

update to use v2 types for indexing

8821 08/04/2014 04:08 PM Jing Tao

For the existing uidnumber, we decrease the size of vector for sorting.