Metacat

Added new sections to the Metacat documentation describing the Metacat
client API and the Metacat 'getlog' servlet action for event reporting.

Updated metacat documentation with additional properties and fixed the
description of several properties. We really need to clean out unused
properties and generally clean up the configuration morass.

Added a property listing servlet administrators.

Changed DBSAXHandler.run() to now use the new DocumentImpl.buildIndex() method
for populating the xml_index table. The new method uses a jdbc ResultSet
for populating the index rather than doing it with the DBSAXNode, so it is
faster and can be run at any time on any document. This will allow us to...

Updated the build index test.

Compose the Metacat URL from the httpserver and the servletpath properties, replacing hard-coded references to servlet.

Send redirect to HarvesterRegistration, instead of using the full class name which works on Tomcat-only installations but not with Apache.

Change the date format to one that is standard on both Oracle and Postgres.

Revisions to Metacat Installation Instructions page. Most of the edits in this revision involve the build.properties file. A new HTML table was created to describe the properties and their values.

Whitespace changes that fix a few formatting problems after Jing's commit.

Replace relative path to harvester registration login servlet with context path generated through ant build

Add properties and filters for harvester registration servlets

Add new feature that delete can be broadcasted by force replication.

The new buildIndex() function now can write allof the appropriate index paths to the database for any given document. Next need to create a function to rebuild on demand, and modify DBSAXHandler.run() to use the new buildIndex() function.

corrected wrong variable names in build file.

Added harvester servlets to the web.xml files.

Added test class for buildIndex() routine. Not completed yet.

Added changes to buildIndex() function. Now it is finding the right set of
paths, just have to save these in a hash and then add them to the DB xml_index
table.

changed function parameters in accordance with changes in PermissionController

Modified inline data permission handling, so that access rules for old version of inline data can be checked correctly.

Added a function which returns inline data id with out the revision number.

Changed error text that is returned when an invalid eml is inserted.

Added another test to check if access is checked when an old version of inline data is read using action=readinlinedata

Changed the ESA nad LTSS skins to display all data from the KNB at the request of
OJ Reichman.

Add a code to load eml201 parser to fix the bug that couldn't generate access rule for eml201 doc.

Add a note that you should put full name as state name to generate a key. Otherwise, the trustkey will be not recongized.

Fixed some more bugs.

Added sql for counting packages.

fixed error in input param

Added code to send showWgList, showSiteList, showOrganization, lsite and usite for one tmpl to other.

Fixed a bug in creation of EML documents when coordinates from the site_list have to be used.

Added lines for updating xml_catalog in the upgrade script to point to the
new schema locations.

Fixed error in handling of multiple additional metadata tags...

Updated build.xml to use new sql scripts.

New schema changes, including upgrade scripts. Includes renamed postgres
scripts.

Test added to insert eml 2.0.0 document and update it with eml 2.0.1 document.

Updates to the config for the esa skin, and added an LTSS skin.

removed errors being generated in handling of qformat when action=insert. If qformat is not specified, xml is assumed as default.

Changing 'Submit Entry' to 'Submit Dataset'

Fixed a bug in handling of associated parties.

Fixed the bug described in 1671. The bug came into picture, when no keyword type is suggested for a particular keyword. This resulted in ignoring of that row of data.

Beginning new method for building the xml_index table. This uses the
JDBC resultset directly rather than DBSaxNode, and recurses through the
records of the table. The new function 'buildIndex()' would be called, but
currently is not linked in to any code, so it shouldn't get in the way....

removed a bug which was pointed out by Bing and fixed by Jing.

Removed some unused code

Revisions to text for the ESA / LTSS registry.

Added a new method to check upload function when a data stream is passed.

Added new upload function which takes InputStream as input.

Adding InlineDataAccessTest.java which has tests regarding inline data access. Also updated AccessControlTest.java

fixed some bugs in document update

Added method to metacat client for reading inline data - readInlineData()

Made changes in AccessControl and Online Data Access tests.

Fixed a bug in upload function. For online data updates, access was not checked.

Modifications to the registry to support the new ESA skin. Factored out some of
the configuration-specific code into properties that are set in the various
cfg files in the skins. New properties in the cfg files are lsite, usite,
showSiteList, showWgList, showOrganization. These now need to be set in every skin...

Changed properties to use the xml_index table by default.

Adding new file with tests regarding access controls related to online data... the tests which are failing are commented out for the time being .. once the bugs are fixed in metacat, they will removed.

Add additional comments to the test cases.

Remove obsolete comment.
Fix broken URL in HarvestSiteScheduleTest.java

Fixed handling of various docid formats.

Code added to handle errors resulting from following urls:
http://metacat.nceas.ucsb.edu/knb/metacat?action2 - no action specified
http://metacat.nceas.ucsb.edu/knb/metacat?action=insert - no docid specified
http://metacat.nceas.ucsb.edu/knb/metacat?action=login - no username specified...

Added check for null condition so that proper error text is returned to user.

Checked to be sure the instance has been initialized in the getDBCOnnection
static method call. Assuming it has been initialized could (and does)
lead to NullPointerExceptions when used outside of the metacat servlet
if the conneciton pool isn't initialized properly.

Reformatted code for readability. It was crazy. Still has problems, but its
better. Will be working on some new methods on monday.

Fixed a bug in access handling when no access is specified.

Some changes and a bug fix

Added eml-2.0.1 tags for eml processing.

Also fixed a bug. The error returned in case of no revision number specified was just null. Now it says that revision number is required.

Merging in changes made in branch 'dataaccess' by Jing Tao.

Changed AccessControlTest.java to include new tests

Changed SubTreeTest.java to handle the exception that is thrown by SubTree.java now.

Added code to test the upload functionality in the client

Adding data files for testing as online data

Added upload functionality to metacat client for upload online data

Adding a new test file for testing the Access Controls in Metacat. Not complete or compilable yet.

Add warning if default harvest list file is not found on disk.

Change relative path to harvestList.xsd schema to allow harvest list editor to run standalone.

added target=_blank to generate UI links

pointed knb2 resutls page at production whippet on port 8080 of nebulous, instead of dev version on 8090

Changed path for eml xsd stylesheet

Changed path for eml.xsd stylesheet.

Updated tag names to be checked out of CVS for EML

Added README explaining directory.

A series of queries and commands being developed to improve metacat
performance. Very incomplete. WARNING: running some of these commmands
WILL DELETE DATA. Do not run these commands in a production environment.

Modified directory name for eml-2.0.x checkouts to match with that in build.xml

Changes directory names and paths of eml checkouts. Added eml-2.0.1 to the eml versions to be checked out.

Added eml2.0.1 specific code in /style file

Added eml2.0.1 in /common stylesheets

Removed some debugging code added in last commit

Added code to read EML2.0.1 into source code.

Made change in the registry so that new documents produced are of eml-2.0.1 standard.
Also made changes in create-registry folder

Added code to make enteries for eml 2.0.1 into the database

Improvements to Harvester registration web form.

Changed index.jsp to fix bug 1232 so that it works on knb.ecoinformatics.org.

Added code to add and remove cookie from the index.jsp when a person logs in or logs out.

Replaced EML2.0.0 checkout tag from EML_2_0_0_FOR_METACAT to EML_2_0_0_FOR_METACAT_WITH_BUGFIX

Modifications to make JS search functions work in the knb2 skin.

CHnaged CVSROOT to use $USER so it needn't be modified as much.

New URL for metacat in settings file.

New alternative KNB skin. Duplicates much of what is on the KNB site, but
this skin can work standalone with metacat (ie, you do not need the KNB
web site to be installed). Modified the resultset.xsl to do some things
specific to this skin.

Added images to install-skin target.

Add diagnostic output

Get rid of some useless code.