Metacat

Changes made to Data Registry Guide by Veronique Connolly

(Commit done by Saurabh Garg for Veronique)

Changes made to Data Registry Form by Veronique Connolly and Saurabh Garg

Changed the code which handles Associated Party, Keywords and Taxonomic Information.

Changes made to Data Registry Guide by Veronique Connolly

(Commit done by Saurabh Garg for Veronique)

Modify harvestListEditorDist target to create the Harvest List Editor distribution using naming conventions that are consistent with other KNB releases.

Change documentType to eml://ecoinformatics.org/eml-2.0.1.

Added a check for eml2.0.1 documents in ContentTypeProvider.java

Add new query to fix existed xml_relation table datapackage type bug.

Using a variable to replace the hard code for namesapce in inserting record to xml_relation table.

Fixed a bug in the format of query result.

upgrade-db-1.5.sql will be written back from src to distribution src.

Added sql command to delete also schema entries also. Earlier the script only deleted old dtd entries

Add a new target to fix the bug in xml_catalog table.

SQL command to update system_id to points to localhost.

Fixed a bug which systemid will always points to knb.

Changes made in entry form based on recommendations from Laura Downey

(Commit done for Veronique Connolly by Saurabh Garg)

Made changes in admin info as requested by Mark Stromberg.

Updated the diagram with terminology that is consistent with the current harvester design.

Modify Harvester documentation to provide instructions for configuring and running Harvester as a servlet.

Formatting improvements.

Formatting improvements.

Implement a new HarvesterServlet for running Harvester as a servlet. This eliminates the need to run Harvester in a terminal window. By default, the HarvesterServlet is commented out in lib/web.xml.tomcat(3,4,5). The user documentation will be modified to instruct Harvester administrators to uncomment the HarvesterServlet entry.

Add a new HarvesterServlet for running Harvester as a servlet. This eliminates the need to run Harvester in a terminal window. By default, the HarvesterServlet is commented out. The user documentation will be modified to instruct Harvester administrators to uncomment the servlet entry.

Change URL value for Harvest unit tests.

Re-implement logic to prune old log entries from the HARVEST_LOG and HARVEST_DETAIL_LOG tables. The old logic caused integrity constraint violations in the database because it tried to delete parent records from HARVEST_LOG prior to deleting child records from HARVEST_DETAIL_LOG....

Formatting improvements.

nodedata added to xml_index for nodes with nodetype=ATTRIBUTE also.

Modified code to add nodedata column to xml_index and enter data into it from xml_nodes table

Modified xmltables to add nodedata as part of the xml_index tables.

Modifying code so that nodedata is stored in xml_index table next to the paths.
This helps in making the search faster.

Increase number of rows in harvest list from 300 to 1200.

Fixed a bug from previous commit

Some more modifications so that % search doesnt run a select on xml_nodes.

Modified code to fix bug # 1850

Add bat file and shell script for use with the distributable version of the Harvest List Editor.

Fixed as suggested in bug 1768

Add harvestListEditorDist target for building distributable versions of the Harvest List Editor tool.

Change default document type in Harvest List Editor to eml-2.0.1.

Remove DOS end-of-line carriage returns.
Other minor formatting improvements to the code.

Modified code so that when a % search is done, a xml_nodes search is not done. This search is not required and hence saves time in doing a % search

Added code to check for NaN while converting String to double.

Added code to check for NaN valuse which converting string to double.

The guide on how to complete dr entries was updated to describe the current entryform.tmpl, and to fix bug 1302.

(Commit for Andrea Chadden by Saurabh Garg)

Fix for bug# 1344

Removed bugs in loading data when user wants to edit the data package

Fixed a bug in containsKey() function.

Modified database creation sql code so that in xml_nodes, nodedatanumerical coulmn is added.

Modified 'insert xml_nodes...' so that numerical data is added into numericalnodedata also.

Modified handling of greater-than and less-than so that comparison is done against nodedatanumerical column.

adding token for name of the database being used

Modified code to work with Postgresql also.

Adding new java code which upgrades the database for version 1.5

Added target and code for upgrading database to version 1.5

Fixed a bug in previous commit. Moved normalization function before the string size is counted so that size change due to normalization is taken into account.

I (Andrea) defined new styles in the .css files that are used in the
entryForm.tmpl page.

(Committed for Andrea Chadden by Saurabh Garg)

I (Andrea) defined new styles in the .css files that are used in the
entryForm.tmpl page.

(Committed for Andrea Chadden by Saurabh Garg)

I (Andrea) reformatted the file by changing the layout of tables, trs,
and tds, and also by removing style info from the html in the file, and
defining styles in the associated .css files

(Committed for Andrea Chadden by Saurabh Garg)

Added code to fix bug 1323. % sign is replaced by its http equivalent now

Added code to check id document is passed as part of the params. This is done toprevent NullPointerException which results in sending null to the user.

Added code to fix bug# 1344. Response template is called when cancel delete is pressed

Added code to fix bug# 1344. Response template is called when cancel delete is pressed.

Fixed a bug in previous commit. Also removed ^M characters that were added in version 1.200

Integrating build.xml from webmdentry into metacat build file.

Integrating ldap templates into metacat CVS tree

Integrating ldapweb.cgi & create-ldap-account.pl into metacat CVS tree.

Integrating ldapweb.cfg code into metacat CVS tree.

Made changes to fix bug# 1538. Changed the code of the normalize function in MetaCatUtil.java. Earlier code was not taking care of characters above 123.

In DBSAXHandler.java, added call to normalize function before text is written to db.

Add a new test case for testing get newest revision number.

Add a new method to get newest version of a given document.

Add a new method to get newest version for a given document.

Modified code to fix bug# 1551 by adding a conditional statement.

Fixed bug #1551 by adding a conditional statement.

Made changes to fix bug# 1310. Now while parsing old documents, the script checks for ACLs also.

Modify value of redirect to match the servlet-mapping URL values in web.xml. The old value used the servlet class name. This worked in Tomcat 4 but seems to break in Tomcat 5 on Windows. The new value uses the servlet-mapping URL value. This should work in both Tomcat 4 and Tomcat 5.

Modify property values of harvester registration servlets to match the servlet-mapping URL values in web.xml. The old values used the servlet class names. This worked in Tomcat 4 but seems to break in Tomcat 5 on Windows. The new values use the servlet-mapping URL values. This should work in both Tomcat 4 and Tomcat 5.

Minor enhancement to support multiple email addresses for harvester administrator and site contact. Each address is separated by a comma or semicolon.

Removed hardcoded path from EventLogTest.

Fixed a bug.

Thanks Jing, Fixed those code comments.

Adde a function to the metacat client to set access on an xml document in a
metacat repository.

One last clarification to the install instructions regarding the sql scripts.

Modified build dist and distsrc targets to be sure the ant tokens are
filtered correctly in the documentation, otherwise the CSS styles do not
show up properly.

Modified the build to be smarter about making sure that the EML schemas
and styles are in place (so manually running 'geteml' should no longer
be needed), and renamed the 'loaddtdschemas' target to 'register-schemas'.
Reorganized and clarified installation instructions to make the order of...

Fixed some typos in the README, and rearranged a little.

Moved deletion of stylsheets from clean to fullclean target so that the
styles will be guaranteed to be in place in the released version even after
a clean build.

Added classpath to javadoc call so that we avoid javadoc errors that
complain about not being able to find the servlet classes.

Added dependency check for eml so that the schemas and dtds are not
checked out of CVS if they already exist in the lib directory. This is
based on checking for the key schema or dtd file from the 2.0.0beta6,
2.0.0, and 2.0.1 releases, so if you've messed with this directory in...

Added dependency check to see if the httpclient.jar and utilities.jar are
already present in lib. If they are, building utilities is skipped. This
allows us to ship a distribution with just the jar files rather than the
source from the utilities module and still have the compile work. Now...

Added sample eml 2.0.1 document for use in the tests.

Modified buildIndex() to now include an '@' sign in the path for ATTRIBUTE
nodes. Removed a bunch of debugging information. Fixed the BuildIndexTest
so that it would work on any machine (removed hardcoded paths).

Added code that changes the node column size

New README in preparation for the 1.4.0 release, and updated the properties
file with the new version number.

Added in servlet action 'buildindex' for building the XML_index table entries
for either a set of documents (if one or more docid params are provided) or
for the whole set of documents in the xml_documents table. The buildindex
action is restricted to only be accessible by users who are listed in the...

Created a list of all of the servlet actions in the documentation and listed
all reuired and optional parameters for each action. These need to be
documented but at least the list is all in one place now.

Added new sections to the Metacat documentation describing the Metacat
client API and the Metacat 'getlog' servlet action for event reporting.

Updated metacat documentation with additional properties and fixed the
description of several properties. We really need to clean out unused
properties and generally clean up the configuration morass.

Added a property listing servlet administrators.

Changed DBSAXHandler.run() to now use the new DocumentImpl.buildIndex() method
for populating the xml_index table. The new method uses a jdbc ResultSet
for populating the index rather than doing it with the DBSAXNode, so it is
faster and can be run at any time on any document. This will allow us to...

Updated the build index test.

Compose the Metacat URL from the httpserver and the servletpath properties, replacing hard-coded references to servlet.