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# Date Author Comment
3864 05/14/2008 02:13 PM Jing Tao

Check in to cvs head. Don't close db connection before returning the connection pool.

3859 05/13/2008 03:09 PM Jing Tao

Add to cvs headd. Add code to correct invalidated eml 201 doucments.

3858 05/13/2008 03:07 PM Jing Tao

Add to cvs head. Change the run method signature.

3857 05/13/2008 03:06 PM Jing Tao

Add to cvs head. Add new flag to indicate if eml201 were correct or not.

3827 05/08/2008 05:15 PM Jing Tao

Checkin to head. Remove this class from Runnable and add sql to delete extral nodes in xml_nodes_revision table.

3818 05/02/2008 03:41 PM Jing Tao

Modify the delete xml_index table query.

3817 05/01/2008 04:51 PM Jing Tao

Add a new target to run the patch which will correct eml201 documents.

3816 05/01/2008 04:47 PM Jing Tao

Add code to execute sql command and finish the task.

3815 05/01/2008 04:10 PM Jing Tao

Fixed syntax error: no ; at an end of import statement.

3814 04/30/2008 05:18 PM Jing Tao

A class to correct invalid eml201 documents. Metacat 1.8.0 and ealier version points incorrect eml-resource.xsd. We need fix eml documents.
Haven't done yet.

3808 04/28/2008 08:49 PM Matt Jones

New version of KNB architecture diagram, in OmniGraffle and PNG formats, with subset diagrams for morpho, metacat and web in png formats.

3807 04/25/2008 04:07 PM Jing Tao

Separate eml201 schema (RELEASE_EML_2_0_1) and style tag (RELEASE_EML_2_0_1_UPDATE_6).

3806 04/23/2008 03:43 PM ben leinfelder

use CDATA when calling the insertTemplate...() javascript methods.

3805 04/23/2008 03:10 PM ben leinfelder

include contextURL parameter (part of token elimination)

3799 04/18/2008 06:05 PM Jing Tao

Add a new class will build query result able in advance. It has been done yet.

3798 04/18/2008 03:21 PM Jing Tao

Change the eml-201 tag from update 5 to update 6.

3797 04/11/2008 10:03 AM ben leinfelder

include leading slash for default ascii view xsl (needs to work in cases where the doctype mapping is not found)

3796 04/11/2008 10:03 AM ben leinfelder

use the ROOT knb web application path of the search box and header inclusion.

3795 04/11/2008 10:02 AM ben leinfelder

use the configured knb site url rather than a hardcoded value for the redirect (since we have it in the properties now)

3794 04/10/2008 06:46 PM ben leinfelder

include leading slash in the default-style xsl path
NOTE: this should be corrected in all the qformat.xml files that the skins use

3793 04/10/2008 06:39 PM ben leinfelder

add servletURL parameter (part of token-eradication project)

3792 04/10/2008 06:35 PM ben leinfelder

add contextURL parameter (part of token-eradication project)

3791 04/10/2008 06:31 PM ben leinfelder

add support for FGDC document display for the knb skin
see bug 3146

3790 04/10/2008 06:03 PM ben leinfelder

based on what jing found with the sanparks search performance issue, his comment for sanparks applies for this saeon file too:
"Changing search field from idinfo/keywords/theme/placekey to placekey"

3789 04/10/2008 05:19 PM ben leinfelder

add support for FGDC document display for the knb skin
see bug 3146

3788 04/10/2008 05:17 PM ben leinfelder

use consistent table attributes (100% width and 0 cell spacing) so that KNB skin looks better when displaying fgdc documents

3787 04/10/2008 11:27 AM ben leinfelder

use "placekey" (without additional leading xpath) because that is in the indexPaths of the build properties (and is used for other searches.
should improve performance....

3786 04/09/2008 06:30 PM Jing Tao

Fixed a bug pathexpr was modified if pathexpr is an attribute.

3785 04/08/2008 05:10 PM Jing Tao

Add new path index in build.properties - dataset/dataTable/physical/distribution/online/url/@function

3784 04/03/2008 02:35 PM Jing Tao

Use plant to replace datos as search value in the query example.

3783 04/03/2008 02:34 PM Jing Tao

remove an extra . and use metacat to replace database in upload method.

3782 04/03/2008 08:16 AM daigle

Iniital addition - doc describing ANT token replacement

3781 04/02/2008 06:16 PM daigle

Restore after accidental deletion

3780 04/02/2008 04:28 PM daigle

Changes to remove ANT tokens for the turnkey install project

3779 04/02/2008 03:21 PM Jing Tao

Add code to test upload same identifier twice.

3778 03/31/2008 04:43 PM Jing Tao

Changing search field from idinfo/keywords/theme/placekey to placekey

3777 03/25/2008 11:09 AM ben leinfelder

limit searching to "common" fields that are indexed.
include checkbox to search all fields.
see bug #3174

3776 03/21/2008 03:17 PM ben leinfelder

-add FGDC specifc fields for indexPath searching
-limit FGDC data returned for the NCEAS skin to those that have "placekey" fields containing "National Center for Ecological Analysis and Synthesis"

3775 03/21/2008 01:31 PM Jing Tao

Modified the query example which will give user more sense.

3774 03/21/2008 12:32 PM ben leinfelder

limit searching to "common" fields that are indexed.
include checkbox to search all fields.
see bug #3174

3773 03/20/2008 05:47 PM ben leinfelder

Parameterize FGDC update/delete functions with the "enableFGDCediting" parameter.
Stylesheets that include fgdc-root.xsl must now set the edit parameter to "true" if they wish to have the editing widgets displayed (true for sanparks and saeon skins but not for nceas)

3772 03/20/2008 05:37 PM ben leinfelder

Enable file naming when returning a zip file of the requested documents.
File names for each docid are provided as additional parameters named by the actual docid value that they are providing a name for. An example query string might look like:

action=read&docid=doc.1.1&docid=doc.2.1&qformat=zip&doc.1.1=fileName1.txt&doc.2.1=fileName2.jpg...

3771 03/20/2008 05:32 PM Jing Tao

Fixed bug that lsid couldn't be shown up in result page of kepler skin. The bug is that in extended query, lsid attribute was treated as a element, but it is attribute.
I also optimized the query by deleting xml_documents table from query. The table is not needed.

3770 03/20/2008 05:27 PM ben leinfelder

remove duplicate CREATEDB step in instructions (pointed out by daigle, thanks!)

3769 03/19/2008 05:57 PM Jing Tao

Fixed bug that kepler skin wouldn't return actor name in query. The reason is there was no separate vector to store returnfield with "]". So those fields with or without "]" are handled
together (which shouldn't). When seperate those return fields, the bug was fixed.

3768 03/18/2008 04:31 PM daigle

Include the contextURL as a parameter for the transformer. Remove leading / from resultset paths

3767 03/18/2008 10:42 AM ben leinfelder

add additional paths that are requested as returnfields in the sanparks/saeon skin searches.
see bug #3174

3766 03/17/2008 06:51 PM Jing Tao

Add a new string buffer to store normalized query xml itself.

3765 03/14/2008 09:46 AM ben leinfelder

use {$contextURL} and {$cgi-prefix} param for absolute paths (instead of relative paths)

3764 03/14/2008 09:36 AM ben leinfelder

use {$contextURL} param for absolute paths (instead of relative paths)
note: this file seems not to be used in metacat now.

3763 03/14/2008 09:13 AM ben leinfelder

use {$contextURL} param for absolute paths (instead of relative paths)
note: this file seems not to be used in metacat now.

3762 03/14/2008 01:56 AM Matt Jones

Fixes to record sies of ecogrid files, and to flag html files.

3761 03/07/2008 05:31 PM Jing Tao

Add upload method into api.

3760 03/06/2008 04:57 PM Jing Tao

Remove commented test case.

3759 03/05/2008 05:08 PM Jing Tao

Don't transfer character which is greater than 128 or less thank 32 to numerical entity symbol.

3758 03/05/2008 05:05 PM Jing Tao

Modified the normalize subroutine - don't use 26 (url encoding) to replace x%x

3757 03/04/2008 05:37 PM Jing Tao

Using reponse.getOutputStream to replace reponse.getWriter in query and read method. So metacat can send correct special character back.

3756 03/03/2008 06:17 PM Jing Tao

Modified the test for nonlationcharacter.

3755 02/29/2008 10:03 PM Jing Tao

Modify normolize method by adding code to handle < > ' and "

3754 02/29/2008 04:05 PM Jing Tao

Remove an obsolete class.

3753 02/29/2008 03:16 PM Jing Tao

Remove an obsolete private method getPartNodeRecordList.

3752 02/29/2008 03:14 PM Jing Tao

Remove an obsolete class.

3751 02/29/2008 01:15 PM Jing Tao

Add new code for xml_nodes table.

3750 02/28/2008 05:30 PM Jing Tao

Some script to generate text search vector.

3749 02/28/2008 02:33 PM Jing Tao

Add timeout parameter for searching user name. If some exception happens, it wouldnot throw it, just print it out.

3748 02/28/2008 02:31 PM Jing Tao

Add a junit test for test AuthLdap. Currently we have getPrincipals test.

3747 02/28/2008 11:36 AM Jing Tao
  • empty log message ***
3746 02/27/2008 02:11 PM ben leinfelder

display the docid.
also just display the publication date as is since the existing parsing made too many assumptions about how the date would be formatted

3745 02/27/2008 11:00 AM ben leinfelder

use $sessionid to determine if the edit boxes are shown

3744 02/27/2008 10:31 AM ben leinfelder

reuse the fgdc-root.xsl for both nceas and sanparks skins (it is included in different containing stylesheets)
note: still need to pin down the switch that [dis]allows editing of the the files

3743 02/27/2008 10:08 AM ben leinfelder

use contextURL parameter so that the "shortform" url for looking at documents actually works and pulls in the correct js and css files

3742 02/27/2008 09:43 AM ben leinfelder

add support for FGDC doctype display

3741 02/27/2008 08:42 AM ben leinfelder

if there is no clientViewBean in the session, insert a new one - saves us from nullPointerException when using this in skins that may not be aware of the bean uses.

3740 02/27/2008 08:41 AM ben leinfelder

ignore commented out DOCTYPE declarations (don't force validation on them)

3739 02/26/2008 10:58 AM ben leinfelder

Get rid of the ant tokens and the relative paths by using the context url and cgi prefix provided by the settings.jsp.
Now the "short form" of urls will work with the iframe skins. sanparks and saeon can also be set as the "default" skin and the paths will resolve correctly....

3738 02/26/2008 10:55 AM ben leinfelder

include the contextURL parameter that is now being passed in by the DBTransform class.
pass this value to the javascript that assembles the iframes

3737 02/26/2008 10:54 AM ben leinfelder

check for a leading "/" in the path when prepending the server context url.
we don't want to step on toes of people that are using "semi" relative paths (they leave out the server part, but provide the rest of the path)

3736 02/26/2008 10:23 AM ben leinfelder

add debug statements so it's clear what transformer parameters are being passed

3735 02/25/2008 05:16 PM Jing Tao

Use dev=1 replace dev like '1'. since postgres 8.3 doesn't support it.

3734 02/25/2008 01:10 PM ben leinfelder

-use jsp rather than html files so hat the server context can be looked up on the fly (as well as additional options from the MetacatUtil class).
-incorporate the use of relative paths in the XML configuration (doctype=>stylesheet mapping)

Note: still using ant tokens in the .cfg file used for perl...not sure how to convert that.

3733 02/25/2008 01:07 PM ben leinfelder

include contextURL and cgi-prefix as parameters in all the transforms (initially used for nceas skin to remove ant tokens in the XSL files....but will be used by other skins as they are converted away from at tokens)

3732 02/25/2008 10:26 AM ben leinfelder

use cgi-prefix from build properties to configure the default skin for login.
removed hardcoded "ldap.ecoinformatics.org" reference in the jsp and reads it from the metacat.properties file.

Note: still uses ant token from the build.properties file, but at least centralizes the spot where the token needs to be dealt with.

3731 02/22/2008 03:52 PM Jing Tao

Add debug info for special charater.

3730 02/22/2008 03:16 PM Jing Tao

Remove the relation query.

3729 02/21/2008 10:02 AM ben leinfelder

use the servlet context path to construct absolute paths to the various file locations

3728 02/21/2008 10:01 AM ben leinfelder

add servletContextUrl to make absolute paths from relative paths when constructing skins from the js/iframe template

3727 02/21/2008 10:01 AM ben leinfelder

add portnumber if not using 80

3726 02/20/2008 07:41 PM Jing Tao

Change the relative path to use a function getServerName+getPortNumber+getContextPath. But there is still problem in default.js.

3725 02/20/2008 07:38 PM Jing Tao

Add server url to system id.

3724 02/14/2008 04:50 PM Matt Jones

Skeleton for data insertion script. Also added documentation to Metacat
library.

3723 02/08/2008 04:49 PM Matt Jones

MOdified query passing, and default cache location.

3722 02/08/2008 03:53 PM Matt Jones

Initial script for downloading and caching data entities associated
with an EML document that is stored in Metacat.

3721 02/07/2008 12:31 PM Matt Jones

Improved the javadoc documentation for the upload() methods to clarify what upload() does and contrast it to insert() and update().

3720 02/01/2008 11:21 AM barteau

Turnkey installer modification: replaced and tokens with relative paths.

3719 02/01/2008 10:55 AM barteau

Turnkey installer modification: created HeaderViewDocs.jsp as a replacement for HeaderViewDocs.htm, because a call to MetacatUtil to get CGI-PREFIX is needed.
Also replaced and tokens with relative paths.

3718 02/01/2008 10:25 AM barteau

Turnkey installer modification: created ESAHeader.jsp as a replacement for ESAHeader.htm, because a call to MetacatUtil to get CGI-PREFIX is needed.
Also replaced and tokens with relative paths.

3717 01/31/2008 11:53 AM barteau

Turnkey installer modification: replace ant tokens with relative paths. Corrected path to css file.

3716 01/30/2008 04:02 PM barteau

Turnkey installer modification: replaced ant tokens with relative paths. Also corrected path to css file.

3715 01/30/2008 03:54 PM barteau

Turnkey installer modification: replaced ant tokens with relative paths. Also corrected path to css file.

3714 01/30/2008 03:20 PM barteau

Turnkey installer modification: replace ant tokens with relative paths.