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# Date Author Comment
498 10/06/2000 06:40 PM Matt Jones

Replaced imagemap with anchor links in the web interface to simplify the
rearrangement of the interface. This new feature uses javascript to
submit the form when the link is clicked.

497 10/05/2000 06:50 PM Matt Jones

Various changes to improve consistency of the MARINE and METACAT user
interfaces as presented through the XSL->HTML conversions. Eliminated
one (extraneous) copy of the rowcol.css style sheet in favor of sharing
a single css stylesheet in xmltodb/lib/style/rowcol.css. Modified all...

491 10/03/2000 04:28 PM bojilova

Included script for insert of all eml dtds.

489 10/03/2000 03:48 PM berkley

added functionality to return the doctype of a relation in a relationdoctype tag. This information is now returned automatically in the resultset under the path resultset/relation/relationdoctype.

488 10/03/2000 03:47 PM berkley

added ability to enterpret relationdoctype tag.

487 10/03/2000 02:26 PM berkley

added new linkage to the title in the table

486 10/03/2000 02:23 PM berkley

removed debug print statements.

485 10/03/2000 02:16 PM berkley

added code for getting stylized related documents

483 10/03/2000 12:55 PM berkley

allowed both indexing threads to run without interfering with each other.

482 10/03/2000 08:05 AM berkley

made package changes

481 10/02/2000 10:56 AM bojilova

- cleared copyfile of marine.properties since it is no longer in use
- added copyfile of srbProps.properties from xmltodb/lib to the servlet classpath
same like metacat.properties

480 10/02/2000 10:32 AM bojilova

moved it from src/edu/ucsb/nceas/metacat dir to here

478 09/29/2000 03:37 PM berkley

fixed bug that caused a nullPointerException when a null resultset was returned.

477 09/29/2000 01:52 PM berkley

changed the look of relations

476 09/28/2000 11:05 AM bojilova

Changed to prevent the insertion if the provided Accession# is in use as Dan suggested.

475 09/27/2000 02:37 PM berkley

removed system.out.printlns

474 09/27/2000 01:12 PM berkley

added a "server" parameter which tells the system the path to the server on which metacat is running. This is used for metacat:// urls.

473 09/27/2000 01:11 PM berkley

added support for urls of the form "metacat://server.xyz.com?docid=XXX:yy"

472 09/27/2000 01:10 PM berkley

added package and resource data and structures

471 09/26/2000 04:02 PM bojilova

Separate thread used for writing into xml_index table.
This cut the time of the response on insert almost in half.
The tread is started afterwards
(on end of document parsing and inserting into xml_nodes) from
DBSAXHandler and uses new(separate) db connection....

470 09/26/2000 03:09 PM berkley

added new fields

469 09/26/2000 03:09 PM berkley

added support for returndoc handling.

468 09/26/2000 03:08 PM berkley

added a packagedoctype parameter so that the servlet knows what kind of doctype a package

467 09/26/2000 03:08 PM berkley

updated for returndoc field

466 09/26/2000 03:07 PM berkley

This class syncronously indexes any package file that is loaded into the database.r

465 09/26/2000 03:06 PM berkley

Added backtrack functionality. Backtracking works by passing a returndoc parameter. There can be more than one. If a document that is hit by a query is not of type returndoc then it searches the database for a related file of type returndoc. If one is found it is displayed, if no relation is found, the original is displayed....

464 09/26/2000 01:03 PM bojilova

included new method getPoolSize()

463 09/20/2000 02:50 PM berkley

added extra timing information to the main() driver method.

462 09/20/2000 01:25 PM bojilova

fix the small bug with output like:
Fatal processing error

<success>
<docid>null</docid>
</success>
on hadleInsertOrUpdateAction()

461 09/20/2000 01:22 PM bojilova

writeDocID() not needed any more
throw SAXException from everywhere

460 09/20/2000 01:21 PM bojilova

on character(cbuf, start, len) included:
if currentNode.getTagName().equals("title")
currentDocument.setTitle(cbuf)
instead of using:
currentDocument.setTitleFromChildElement() in endDocument() call

459 09/20/2000 01:15 PM bojilova

change Assession# generation to use the same db connection

458 09/20/2000 10:58 AM berkley

Updated the download data function. the download data function now pulls a document from the database, zips it up and sends the zip stream to the client. It also zips up any related files. a relation parameter is used to pass related files to the servlet. If only one document should be zipped and sent, a single docid in the param hashtable is sufficient.

457 09/15/2000 05:40 PM bojilova

changes related to decrease the time of INSERT of document.
With these changes I inserted 200KB file for 3 minutes, 50KB for 50sec.
This is mainly simplifing the DBSAXNode class and
using batching feature of Oracle JDBC driver.

456 09/15/2000 03:16 PM berkley

updated this style sheet to display only resource documents and their related files. Also added hidden input params to the images on the left so that the related document info is sent back to the servlet when documentation or an abstract is requested.

455 09/15/2000 12:53 PM berkley

this stylesheet now processes relation information.

454 09/15/2000 12:53 PM berkley

This allows for the easy handling of metacat:// urls. The documentation in the source code explains the specification for the url in detail.

453 09/15/2000 12:52 PM berkley

Added functionality for package specifications. metacatservlet now contains a new action called getrelateddocument that handles retrieving related documents using the metacatURL specification (metacatURL.java). DBQuery contains new code in runQuery that embeds relation tags in the returned hashtable describing the documents related to each docid. querySpecification contains a new method which prints the sql that does the relation query.

452 09/14/2000 12:33 PM bojilova

store generated Access# in meta_file_id tag if there are any

451 09/13/2000 03:03 PM bojilova

fix bug in toXML() about getting output of XML document like:
<paragraph

450 09/13/2000 01:59 PM berkley

added parentnodeid to xml_index table

449 09/13/2000 01:57 PM berkley

added parentnodeid to xml_index

447 09/13/2000 01:09 PM bojilova

fix for "Document not found" err message on "getdocument" action

446 09/13/2000 01:07 PM bojilova

fix for "public" authentication

445 09/12/2000 01:38 PM bojilova

xml_documents.public_access modified to be
NUMBER DEFAULT 1
ie all documents to have public access by default

444 09/12/2000 12:42 PM berkley

removed print statments

443 09/12/2000 12:28 PM berkley

fixed xml tag error in squer

442 09/12/2000 11:24 AM berkley

fixed bug in handleSQuery that returned the tag in the <query> tag of a resultset.
BugID:
Submitted by:
Reviewed by:

441 09/12/2000 10:37 AM bojilova

added check from "read" permission on "query" and "squery" actions
for connected user or for "public" connection

440 09/11/2000 01:36 PM bojilova

3 indexes added on:
xml_nodes (rootnodeid)
xml_nodes (parentnodeid)
xml_documents (docid, doctype)

439 09/06/2000 09:34 AM berkley

sql file defining the table structure for eml-package data.

438 09/05/2000 02:01 PM berkley

added documentation and cleaned up the markup.

437 09/05/2000 01:51 PM berkley

added support for getabstract action

436 09/05/2000 01:50 PM berkley

Added a method called getNodeContent which retrieves the content of a node in a document. If there are more than one nodes with the same name returned, it returns an array with all of the data.

435 09/05/2000 01:49 PM berkley

Added support for viewabstract

434 09/05/2000 08:46 AM berkley

added resource.xsl to the catalog

433 09/05/2000 08:45 AM berkley

no message

432 09/05/2000 08:43 AM berkley

style sheet for resource documents

431 09/01/2000 05:37 PM Matt Jones

Modified MetaCatServlet to use the new DocumentImpl.toXml() method for
efficiency of reading documents. See bugzilla bug #111 for an explanation.

430 09/01/2000 05:24 PM Matt Jones

Updated the test.xml file to use more XML features for testing insert,
update, and read functions of DocumentImpl. Now the document contains
comments and processing instructions.

429 09/01/2000 05:14 PM Matt Jones

Fixed document reading bug (bugzilla bug #111) so that reading documents
is no longer a power function of the number of nodes in the document
(which used to be the case). Now, reading a document occurs entirely
within DocumentImpl, by making a single SQL call to get the document data,...

428 09/01/2000 01:47 PM bojilova

change the 2 executions in archiveDocRevision()
with 1 statement:
"insert into xml_revisions
select ... from xml_documents where docid = ..."

427 09/01/2000 12:04 PM bojilova

small changes on hasWritePermission()

426 08/31/2000 05:08 PM bojilova

get rid of the FK in xml_acess table that points to xm_documents.docid
since xml_access.docid(s) point to current and revised documents
(ie xml_documents.docid and xml_revisions.docid)

425 08/31/2000 05:01 PM bojilova

storing user_owner and user_updated where needed
new function in DocumentImpl checking for "write" perm on UPDATE or DELETE
added delete from xml_index of the old version of docid on UPDATE

424 08/31/2000 02:43 PM berkley

this file is no longer used.

423 08/31/2000 02:20 PM berkley

changed xslf for new returnfield scheme. the returnfields are now returned as <param name="<returnfield>"> tags.
hThe sql for the returnfield query was redone to fix a previous problem with slow queries

422 08/31/2000 02:18 PM berkley

changed xslf for new resultfield scheme

421 08/30/2000 11:19 AM bojilova

cleared static methods in AccessionNumber classes for fixing bug found
when multiple requests to the servlet at a time.

420 08/29/2000 01:58 PM berkley

changed paths in returnfield parameters

419 08/29/2000 11:01 AM berkley

added alt tags

418 08/29/2000 11:01 AM berkley

added alt tag

417 08/29/2000 11:00 AM berkley

new graphics and their adobe illustrator vector files

416 08/29/2000 10:58 AM berkley

changed colors and layout

415 08/28/2000 01:28 PM Matt Jones

Minor update to remove unneeded constructor in DocumentImpl class.

414 08/28/2000 11:38 AM bojilova

new table xml_access and new attrs to xml_documents for ACL

413 08/25/2000 04:18 PM bojilova

for getDoctypes() added
WHERE entry_type='DTD' condition in the select statement

412 08/25/2000 01:56 PM berkley

fixed typ-o

411 08/25/2000 01:49 PM bojilova

Changes with Srb authentication: including quering of Srb/MCAT during the Srb connection for:
- groupname of connected user
- list of groups and users in MCAT for ACL function for MetaCat

410 08/25/2000 01:17 PM berkley

update of build.xml based on Matt's recommendations

409 08/25/2000 11:59 AM berkley

added an image-path property to get around the messed up images when loading images from tomcat. To add your own image directory,
create a directory under /opt/httpd/html/img/ and add the path to the image-path property in build.xml. Then all img tags in your documents...

408 08/24/2000 06:28 PM Matt Jones

Continued code redesign for the DocumentImpl class. Now the "delete" and
"write" methods are static, so a DocumentImpl objject need not be created
in order to initiate a INSERT, UPDATE, or DELETE action (it is created
implicitly by the DBSAXHandler). When doing a "READ" action, one still...

407 08/24/2000 04:47 PM Matt Jones

Folded the functionality from DBWriter into DocumentImpl, continuing the
work started earlir to create a more DOM-like model for the classes, in
which a single DocumentImpl class handles both reading and writing of
documents to the database. Modified shell scripts and MetaCatServlet to...

406 08/24/2000 08:57 AM berkley

removed extraneous dash (-) from output loop that was entered unintentionallyi

405 08/23/2000 03:55 PM berkley

changed the field names to be case-sensitive in the returnfields

404 08/23/2000 03:54 PM berkley

changed the field names to be case-sensitive

403 08/23/2000 10:33 AM berkley

added the returnfield element to be used for dynamically choosing which fields to return from xml_nodes.

402 08/23/2000 10:29 AM berkley

added support for the returnfield parameter
-QuerySpecification now sets a flag (containsExtendedSQL) when there are returnfield items in the pathquery document.
the accessor method containsExtendedSQL() can be called by other classes to check for extended return parameters...

401 08/23/2000 10:22 AM berkley

added support for the returnfield parameter
-added the dynamic parameters to the returned hash table of documents

400 08/23/2000 10:20 AM berkley

added support for the returnfield parameter

399 08/23/2000 10:19 AM berkley

marine.properties is no longer needed because the marine servlet uses all of the metacat properties.

398 08/23/2000 10:17 AM berkley

a way to access the marine servlet without using javascript

397 08/23/2000 10:16 AM berkley

updated the URL given the new <returnfield> paramet

396 08/22/2000 11:56 PM Matt Jones

Folded the functionality from DBSAXDocument into the DocumentImpl class.
Now DocumentImpl handles both the reads and the writes to the database.
Eventually, it will implment the full DOM Document interface. Eliminated
the DBSAXDocument.java file as it is no longer relevant....

395 08/22/2000 10:37 PM Matt Jones

Updated the readxml shell script to use the new DocumentImpl class instead
of the old DBReader class.

394 08/22/2000 10:34 PM Matt Jones

Removed DBReader.java because the functionality of that class has been
replaced by the more efficient DocumentImpl class.

393 08/22/2000 10:32 PM Matt Jones

Created new class "DocumentImpl" which represents an XML Document. This
document will eventually implment the DOM Document interface. For now,
it implments all of the functionality that was present in DBReader, plus
cuts down on the number of database calls required to read a document. And...

392 08/21/2000 03:41 PM Matt Jones

Added script to register document types in the xml_catalog table for our
common public ID's.

391 08/21/2000 03:38 PM Matt Jones

Added install feature for copying dtd's to the servlet directory so that
they are accessible to the metacatservlet.

390 08/21/2000 03:19 PM Matt Jones

Added new utility query to return all of the xml_nodes info for a given
document id in metacat.