only surround main dataset with border to avoid a weird border artifact when displaying sub-groups of the eml package
include header/footer like in the old JS-based template
do away with the "eml-common.xsl" - it's not really worth it in terms of being able to customize for each skin
use sbclter css
use shared style sheets for rendering eml. this is sbclter/pisco-like
consolidate shared stylesheets - no differences between 2.0.1 and 2.1.0 directories
better log message
remove duplicate "attributeindex" parameter
more debugging for objectInfo problem
checking for a null objectformat
backtracking
add some error output
added a check for bad data into listObjects
commented out a println
new service api jar
updated DB scripts for D1 schemas
Bug 3835 - design and implement OAI-PMH compliant harvest subsystem
Fix a bug in the EML to Dublin Core crosswalk XLSTs. First and last names were being concatenated. The fix is to place the space character inside an xsl:text element.
changed improper use of getFS() to a /. getFS() should never be used with a URL since it will return \ on windows which is not a valid separator in a URL.
removing unused search pages (leftover from 'default' skin copy)
separate the class and the ontology from the the URI for easier reading. putting them in a table also helps
include links from annotation to the data package metadata
include stylesheet to display annotation document on it's own (in addition to within a resultset)
include the column name that the measurement is mapped to
list the currently registered ontologies (in case someone wants to unregister them?)
rearrange the ontology registration page - bioportal-hosted ontologies come first
include dropdown of all bioportal ontologies - you can choose to register or unregister them with metacat for annotation-based searching. perhaps not the most elegant workflow, but better than having to manually collect the URIs and URLs.
include annotation display in the search results - NOTE using XPath 2.0 function for accessing the ontology URIs that are included as namespaces in the annotation. adding Saxon jar for this.
include a page for [un]registering ontologies with the ontology manager in the semtools plugin
minor upgrade to commons-logging (1.0.3->1.0.4)
basic query can be issued and includes:-match any/all-from same observation-for Entity, Characteristic, Standard, Protocol, Measurement
use same xercesImpl as geoserver (2.4)
upgrade to xalan 2.7 from 2.5.1 (geoserver was using 2.7 already)
upgrade commons-collections (3.2) and commons-lang (2.5) - avoid conflicts with semtools plugin that requires these newer jars.
upgrade the log4j jar - reduces the duplicate jars to wade though in the build process
don't include the semtools plugin in the default config
remove chad's local changes (server, db, etc) - but preserve the D1 config values that were added
new values for mets namespace
added METS schemas to db scripts
added METS schema to the catalog
moved the dataone types to the metacat.properties file
updated for new dataone jars
changes to work with new dataone jars
removing old service api jar
new dataone jars
include MetacatHandlerPlugin interface so that other projects [semtools] can extend the actions handled by Metcat without editing the codebase directly. The SemtoolsPlugin is the prototype for this and can be registered using the Metacat admin interface. Note that the plugin implementation class and supporting jars must be included in the webapp in order for the request to be handled correctly (the semtools build is injecting these as part of it's build process).
include 1.9.3 upgrade script in trunk
updated folder name for schemas
added explicit 200 codes to ResourceHandler
use localhost as defaults for the properties
print the workflow server name
added better logging and http code setting
changed metacat to get the new version of the d1 schemas
fixed bug where the query cache was not getting reset by a REST insert/query combo.
include bioportal widgets, at least for an example.oboe-sbc and oboe are both registered as tests.
do not attempt to drop 'identifier_id_seq' - it does not seem to exist
add 1.9.3 upgrade scripts to trunk
[merged from 1.9.3 branch] security fix: never unregister the "public" user session
map the eml 2.1.0 documents to be rendered by the correct (existing) stylesheet.
Merge 1.9.3 branch to the trunk.
merge 1.9.3 change to include karxml 2.1 documents in search/rendering
re-added some code inadvertently removed
merged with version from 1.9.3 branch to fix bug with character encodings
added a todo
new todos from code review with roger
merging changes from branch
merging test changes into the trunk
remove "indus" urls
fixed a bug where if you don't build from a directory called 'metacat' unintended files can be copied from another 'metacat' directory by the ecogrid build files
added TODOs and cleaned up the code a bit
do not read from the inputstream before passing it off to the SAXParser
fixed mime multipart problems so that roger can try to use the d1client
fixed error where insert/update errors were not getting caught as exceptions
fixed bug with logger where localid didn't get appended when inserting a data file
reformatting logs for robert
added another logging statement
added replicate log statements with the guid and localId
fixed update bug I introduced yesterday while fixing replication
hopefully fixed bug with systemmetadata replication
debug statements in dbsaxhandler
still working on getting guid problems fixed with replication
fixed identifier manager problem with getting guid for systememtadaa doc
fixing problems with replication and systemmetadata
set the content type to text/xml for the rest interface
fixed yet another null sessionData bug
Fixed spelling error.
Set content type on listObjects to be XML so that it is recognized by clients.Reformatted method to use original file conventions.
Reformatted code to fix indenting.
fixed more access control problems. also fixed extraneous white space that was getting put into the listobject output stream
fixed problems with access control on sysmeta
fix for set access bug
fixes for the access control setting for sysmeta
added functionality to set access permissions to system metadata the same as the document that it describes
fixed major bug in replication where the document info was being truncated due to a poorly implemented sax parser
hopefully fixed get bug where session was null
adding dataone to the login org choice for the dev skin