only create guid->docid mapping during data replication if it does not already existhttp://bugzilla.ecoinformatics.org/show_bug.cgi?id=5520
remove xml_acccess.docid reference (oops)http://bugzilla.ecoinformatics.org/show_bug.cgi?id=5560
test update and set access during replication from A->Bhttp://bugzilla.ecoinformatics.org/show_bug.cgi?id=5520
updated D1 API -- removed Permission.REPLICATE and associated parameters
a minute for replication?
process system metadata before access rules (access control is now driven by GUID so the mapping needs to be there)
Change the key of query result cache. The key now has the real search value.
include SerialVersion in describe responsehttps://redmine.dataone.org/issues/2135NOTE: d1 jars should be replaced once all schema changes are finalized and the generate d1_common code is committed to svn
comment out B->A testhttp://bugzilla.ecoinformatics.org/show_bug.cgi?id=5520
use correct URLs for replication/Metacat client
simple tests for 2-way data replicationhttp://bugzilla.ecoinformatics.org/show_bug.cgi?id=5520
ROLLBACK: check for non-public session in Metacat before showing the registry formhttp://bugzilla.ecoinformatics.org/process_bug.cgi
check for non-public session in Metacat before showing the registry formhttp://bugzilla.ecoinformatics.org/process_bug.cgi
redirect to the registry form following successful login - but allow an override in case we only want to render the success and stay there (ajax call from main sanparks page).
include 'archived' system metadata element in backing DB store
include the logging level with configuring logger (with file appender) for replication and dataonehttp://bugzilla.ecoinformatics.org/show_bug.cgi?id=5534
add ; to end of update command
only update accessfileid for our new guid-based records
move latest postgres access upgrade statements to oracle scripthttp://bugzilla.ecoinformatics.org/show_bug.cgi?id=5560
include revision clause when updating the accessfileid on the xml_acccess table
remove docid column in favor of guidhttp://bugzilla.ecoinformatics.org/show_bug.cgi?id=5560
include "esa" context in the data registry URL.http://bugzilla.ecoinformatics.org/show_bug.cgi?id=5114
If a member node cannot be found in the node list matching the targetNodeSubject given in isNodeAuthorized(), throw a ServiceFailure exception.
Minor reformatting for readability.
fix tests:-insert default objectFormatList from d1_common (includes schemaLocation now)-calculate checksum for the system metadata using the ChecksumUtil in d1_common
update with latest d1_common/d1_lib (includes latest schema changes)
prepared statement toString() does not include quotes (') around the inserted values -- now the test reflects this.
only handle 100 (consecutive!) docId generations per millisecond, otherwise the generated docid part is bigger than Long.MAX_VALUE and Metacat cannot fully handle that.
Metacat now keeps track of permissions on a per-version basis -- the test reflects this change in behavior.http://bugzilla.ecoinformatics.org/show_bug.cgi?id=5560
check previous revision when attempting to update access control with EML 2.0.x docshttp://bugzilla.ecoinformatics.org/show_bug.cgi?id=5560
remove old access rules for a data object when they are being updated by rules contained in an EML document. Now the OnlineDataAccessTest EML 2.1.0 tests pass.http://bugzilla.ecoinformatics.org/show_bug.cgi?id=5560
construct the proper previousDocId when checking for update permission
for now, look up SystemMetadata directly from the table otherwise we won't have the latest access information. Need to refresh the in-memory copy everytime we edit the access policy via Metacat (includes EML parser)
check previous revision for permissions to update (includes data described by EML)
use correct "rev" column in xml_revisions table
refactor Metacat access handling to be on a per-revision basis so that it more closely aligns with the DataONE approachhttp://bugzilla.ecoinformatics.org/show_bug.cgi?id=5560
To avoid id generation conflicts happening at the same millisecond, append a 5 character random string to the end of the docid.
Remove header2, footer2 and left-nav2 files.
change the default scheduler and workflow run engine urls.
retry: add node name in the correct order for predicate navigationhttp://bugzilla.ecoinformatics.org/show_bug.cgi?id=5561
update test to reflect newer change:handle queries with predicates correctly.when docids are used in the return field look up, we need to make sure they are included in the values in the correct order for their corresponding parameter place holders (?)
add node name in the correct order for predicate navigationhttp://bugzilla.ecoinformatics.org/show_bug.cgi?id=5561
Use the absolute path for the change permission jsp page.
Add header style to distiguish header and normal row.
Make TPC link to use the same mechanism to open header and left panel.
handle queries with predicates correctly.when docids are used in the return field look up, we need to make sure they are included in the values in the correct order for their corresponding parameter place holders (?)
widen the third column.
close prepared statement only if not nullhttp://bugzilla.ecoinformatics.org/show_bug.cgi?id=5562
fixed a bug that using a wrong table name - acces_log.
fixed a bug that using acces_log table name.
Upgrade the hazelcast libraries to 1.9.4.4 from 1.9.3.4.
Use accessblock in setaccess method. So user can grant/revoke public readable access.
ensure that the revision list is ordered ascending in case someone changes the sql query without realizing that it matters...
set the byte size of the ORE map before adding it
set/update the obsoletes/obsoletedBy fields in system metadata so that we always have a complete revision history for each object.Note: ORE maps do not have revision history...yet(?)
order the revision list, ascending.
removing unused class -- can't find a reference to it and it's causing compilation errors for me.
for "all" permission, return a list of READ, WRITE, CHANGE_PERMISSION
generating ORE maps and creating/updating system metadata now. There are some Permission conversion issues to be worked out yet
look up access policy by guid or local idTODO: resolve the Metacat/EML "all" permission as it relates to DataONE (there is only READ, WRITE, CHANGE_PERMISSION). for now I am using CHANGE_PERMISSION when it is a Metacat "all"
make exception/error reporting clearer -- was getting lock messages when perhaps that was not the correct exception.
look up all docids is now a static method (ORE/SystemMetadata generation)
Add log statements for each call to ILock.unlock() for debugging.
Add new test method to test getAccessControl.
Add eml test file which contains access part.
evict the HazelCast SystemMetadata entry if we update the access control rules via Metacat's legacy API, otherwise stale SystemMetadata stays in memory instead of being looked up from the backing table store.
optionally include ORE generation/insertion into Metacat when generating SystemMetadatahttps://redmine.dataone.org/issues/2056
Set a default HazelcastInstance after init() is called, and use this instance in getLock() to acquire a lock in the cluster.
no need to cast docInfo entries to String -- they are all strings
set revision history, the create/update dates and the owner/submitter (correctly)
use shared method for looking up "docInfo" map -- both in Metacat replication and in D1 system metadata generation
make default formatting a little bit easier to read
reformat code -- no changes
refactor SystemMetadata creation into separate class from the MetacatHandler -- this will be shared by upgrade code and normal metacat api.
include all document revisions when generating "missing" system metadataTODO: revision graph captured in obsoletes/obsoletedBy
When using ILock.lock(), get a lock on the string value of the Identifier, not the Identifier object itself. Hazelcast locking won't work otherwise.
Use the Hazelcast ILock mechanism to lock the system metadata identifier rather than using IMap.lock(pid).
simplify SystemMetadata generation -- will be done during Metacat upgrade for D1 features/support.
clean up populator; use IOUtils library to do string<->stream conversions
utilities jar should not be committed to Metacat otherwise we will not retrieve the tagged version during Metacat build process.
catch all possible exceptions
act as a registered CN when calling CN methods -- create(), for example, is restricted to only be callable by a node of type CN.
Set sessionid for clientVeiwBean when it handle a request.Always set the order type to "allowFirst".
use IOUtils for testing read/write of XML strings. This goes along with the utilities project change to use the same apache commons IO library. Be sure to clean the utilities checkout in order to catch the right utilities svn tag when building!
remove the D1 configuration group (header)
verify checksum when retrieving replica from another member node.https://redmine.dataone.org/issues/1794
make sure to get/put system metadata to the HZ map instead of using IdentifierManager directlyverified changes for: https://redmine.dataone.org/issues/1999
match documentation for the MN.describe() headerhttps://redmine.dataone.org/issues/1904
configure synch schedule in the admin screenhttps://redmine.dataone.org/issues/1933
look-up sych schedule from metacat properties instead of hardcoding themhttps://redmine.dataone.org/issues/1933
when comparing D1 Subject objects, use the equals() method not direct string comparisonhttps://redmine.dataone.org/issues/2050
access nodeList list correctlyhttps://redmine.dataone.org/issues/2049
When read a FGDC document, Metacat will add a new parameter enableFGDCediting params for the xml transforming.
New d1 common jar. Fixing my overwritten jar.
set the uploade file size -1.
New d1 jars with changes to SubjectBase in the types classes.
remove D1 configuration -- it has its own admin screen now
updated cos.jar -- cos-26Dec2008.zipFile upload improvements:
Added support for Servlets 2.4 and Java 5.Added an ExceededSizeException type to make catching easier.Added support for EBCDIC machines.Added a workaround for browsers that send Content-Length of -1....