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  • svn:mergeinfo: /branches/D1_0_6_2_BRANCH:6107-6121

# Date Author Comment
7548 04/12/2013 02:56 PM Jing Tao

Use the EmbeddedSolrServer to replace HttpSolrServer. Now it still has some issues.

7547 04/11/2013 01:43 PM Jing Tao

Add junit test class to test the SolrIndex class.

7546 04/10/2013 05:30 PM Jing Tao

Add insert method for SolrIndex.

7545 04/10/2013 03:39 PM Jing Tao

Remove the file generated by the wizard.

7544 04/10/2013 03:38 PM Jing Tao

Remove the file generated by the wizard.

7543 04/10/2013 03:35 PM ben leinfelder

use updated EML stylesheet tag. https://projects.ecoinformatics.org/ecoinfo/issues/5903

7542 04/10/2013 03:34 PM Jing Tao

Figured out to read beans from the configuration file.

7541 04/10/2013 11:16 AM ben leinfelder

use more modern approach for web.xml: schema instead of dtd for web-app declaration. https://projects.ecoinformatics.org/ecoinfo/issues/2237

7540 04/10/2013 11:14 AM Jing Tao

Add the dependency of solr-solrj.

7539 04/10/2013 10:28 AM Jing Tao

Add the repository and dependency of the d1_cn_index_processor.

7538 04/09/2013 03:54 PM Jing Tao

add the metacat-index component. It has nothing right now.

7537 04/09/2013 03:43 PM ben leinfelder

remove explicit reference to KNB when Metacat may not be deployed as the KNB node. This has bothered my for a while, too. https://projects.ecoinformatics.org/ecoinfo/issues/3736

7535 04/05/2013 03:21 PM Jing Tao

Add a new class ApplicationController.

7534 04/05/2013 12:38 PM ben leinfelder

allow verification date to be updated for replicas (patch from Skye). https://redmine.dataone.org/issues/3699

7533 04/05/2013 09:28 AM ben leinfelder

(generated image commit) add ObjectPathMap reference for an indication about how we might read the bytes of a science metadata file for generating the index events.

7532 04/05/2013 09:27 AM ben leinfelder

add ObjectPathMap reference for an indication about how we might read the bytes of a science metadata file for generating the index events.

7531 04/04/2013 05:08 PM ben leinfelder

add new Stand-alone indexer component that can utilize more of the cn-index-processor code (Spring configuration) as is. Include Hazelcast reference to illustrate listener mechanism for responding to events that affect the index.

7530 04/04/2013 11:56 AM Jing Tao

Add an example of the solr index configuration file.

7529 04/03/2013 05:05 PM Jing Tao

Change the name of the class SolrFieldParser to IDocumentSubprocessorFactory.

7528 04/03/2013 12:02 PM Jing Tao

Add SolrDoc and SolrElementField class.

7527 04/02/2013 05:49 PM Jing Tao

Add a new class SolrFieldParser and remove some classes like GenericIndex.

7526 03/28/2013 04:14 PM ben leinfelder

include class diagram for components in the cn-index-processor packaage (dataone), metacat, and solr library.

7525 03/25/2013 05:22 PM ben leinfelder

switch to non-snapshot EZID client jar.

7524 03/25/2013 11:57 AM ben leinfelder

use new, dedicated, LTER test account for LDAP referral test.

7522 03/25/2013 10:30 AM ben leinfelder

added more classes to the index diagram to reflect current state of the code - needs to be updated to include plan for implementation (e.g., DocType object is not what we want). http://bugzilla.ecoinformatics.org/show_bug.cgi?id=5884

7521 03/22/2013 04:50 PM ben leinfelder

enable plantuml generation when building the sphinx documentation. note that you do need to have graphviz installed, but hopefully that is all.

7520 03/22/2013 12:43 PM ben leinfelder

select only distinct guids (synch may have failed more than once for any given guid)
https://redmine.dataone.org/issues/3539

7519 03/22/2013 12:29 PM ben leinfelder

include xml_revisions.
do not allow removal of server_location = 1 documents (these are not replicas).
https://redmine.dataone.org/issues/3539

7518 03/15/2013 12:24 PM ben leinfelder

add README note about DOI support http://bugzilla.ecoinformatics.org/show_bug.cgi?id=5513

7517 03/14/2013 09:56 AM ben leinfelder

include size and format datcite elements (optional) and use more general resourceType without formatId in them (Dataset/metadata and Dataset/data). http://schema.datacite.org/meta/kernel-2.2/doc/DataCite-MetadataKernel_v2.2.pdf

7516 03/13/2013 05:11 PM ben leinfelder

lookup the title for EML files when registering DOIs.
lookup the creator from DataONE CN (if available).
add EML-based test. http://bugzilla.ecoinformatics.org/show_bug.cgi?id=5513

7515 03/13/2013 03:13 PM Chris Jones

Set the session to null so that the call uses the CN certificate when calling MN.systemMetadataChanged();

7514 03/13/2013 07:26 AM Chris Jones

To keep all nodes up to date with regard to system metadata changes, add the broadcastSystemMetadataChange() method that finds replica MNs in the node list and calls systemMetadataChanged(). Modify setReplicationStatus() and updateReplicationMetadata() to fire this off when a replica status changes to completed. We may decide to inform MNs at other times too, but this is a conservative amount of calls going to the MNs for now.

7513 03/12/2013 04:45 PM ben leinfelder

include the create test in the suite

7512 03/12/2013 04:44 PM ben leinfelder

refactor DOI registration into separate class. http://bugzilla.ecoinformatics.org/show_bug.cgi?id=5513

7511 03/12/2013 04:26 PM ben leinfelder

refactor using ezid-client changes that split field names and values into separate enums. http://bugzilla.ecoinformatics.org/show_bug.cgi?id=5513

7510 03/12/2013 03:20 PM ben leinfelder

Correctly mint and register DOIs in teh MN API implementation. Add tests to exercise minting and creating. http://bugzilla.ecoinformatics.org/show_bug.cgi?id=5513

7509 03/12/2013 03:18 PM ben leinfelder

reference the correct metacat.properties entry for "guid.ezid.enabled"

7508 03/12/2013 01:15 PM ben leinfelder

use correct default ezid service baseURL

7507 03/11/2013 04:48 PM ben leinfelder

register DOIs with minimal DataCite metadata. still need to determine which details to include and when, but the plumbing is in place as we refine those rules. http://bugzilla.ecoinformatics.org/show_bug.cgi?id=5513

7506 03/08/2013 03:49 PM ben leinfelder

class for removing failed/invalid replicas from target nodes that previously held replicated content (KNB/LTER/PISCO/etc). https://redmine.dataone.org/issues/3539

7505 03/07/2013 05:16 PM ben leinfelder

add section about behavior for deprecated Metacat API. http://bugzilla.ecoinformatics.org/show_bug.cgi?id=5513

7504 03/07/2013 05:05 PM ben leinfelder

add DOI development page. http://bugzilla.ecoinformatics.org/show_bug.cgi?id=5513

7503 02/26/2013 10:27 AM ben leinfelder

disable EZID/DOI minting by default since we do not yet have a means of tracking minted DOIs and augmenting metadata for them when we actually receive the object in a subsequent create() or update() call. http://bugzilla.ecoinformatics.org/show_bug.cgi?id=5753

7502 02/25/2013 09:23 AM ben leinfelder

use utilities 1.3.0 tag

7501 02/25/2013 08:52 AM ben leinfelder

add solr index documentation outline. http://bugzilla.ecoinformatics.org/show_bug.cgi?id=5884

7500 02/24/2013 09:15 PM ben leinfelder

wordsmith the identity mapping page. Not fundamentally different, but hopefully more concise. http://bugzilla.ecoinformatics.org/show_bug.cgi?id=5814

7499 02/24/2013 09:14 PM ben leinfelder

use d1_libclient v1.2.1 (temp file creation fix)

7498 02/22/2013 01:06 PM Brendan Hahn

tweak to pathquery/generic xpath handling

7497 02/22/2013 12:05 PM ben leinfelder

use utilities and eml style tag as we prep for release.

7496 02/22/2013 11:52 AM ben leinfelder

ready Metacat for 2.0.6 release (docs, db version, build files etc).

7495 02/22/2013 11:07 AM ben leinfelder

group user_owner clause as "AND (... OR .... OR ....)" to handle multiple pathquery <owner> elements. http://bugzilla.ecoinformatics.org/show_bug.cgi?id=5880

7494 02/21/2013 05:15 PM Brendan Hahn

accidentally added

7493 02/21/2013 05:13 PM Brendan Hahn

typo

7492 02/21/2013 05:13 PM ben leinfelder

remove older lucene library and include ORE test to make sure that change does not prevent us from generating OREs. http://bugzilla.ecoinformatics.org/show_bug.cgi?id=5874

7491 02/21/2013 12:43 PM Brendan Hahn

Search and indexing with Lucene/SOLR
Requires a manually configured SOLR installation
Not currently used by the rest of metacat

7490 02/07/2013 10:04 AM ben leinfelder

PARC, OBFS, NRS: use only the paths that are indexed by default in metacat.properties. If deployments want to cusotmize these, they are free to do so, but we should ship skins that match the paths we index with a vanilla installation.

7489 01/31/2013 04:02 PM ben leinfelder

generate ID from UUID. http://bugzilla.ecoinformatics.org/show_bug.cgi?id=5840

7486 01/18/2013 02:12 PM ben leinfelder

make sure serial version is included or set on MN.update().
http://bugzilla.ecoinformatics.org/show_bug.cgi?id=5793

7481 01/07/2013 04:39 PM ben leinfelder

remove duplicate cgi-bin part in path to create account

7480 01/07/2013 04:23 PM Brendan Hahn

Quick fix for bad handling of non-default data/backup directories.

7479 12/20/2012 03:54 PM Chris Jones

Also add the 2.4.1 hazelcast jars to the trunk.

7477 12/18/2012 05:33 PM ben leinfelder

remove indexing task from the queue when we are updating the document

7476 12/12/2012 02:38 PM ben leinfelder

move DocInfo parsing into utilities project so that it can be used by Morpho as well as Metacat.
http://bugzilla.ecoinformatics.org/show_bug.cgi?id=5737

7475 12/12/2012 02:38 PM ben leinfelder

move DocInfo parsing into utilities project so that it can be used by Morpho as well as Metacat.
http://bugzilla.ecoinformatics.org/show_bug.cgi?id=5737

7474 12/12/2012 02:32 PM ben leinfelder

use utilities tag to build (remember to 'fullclean' after this update!)

7471 12/10/2012 09:07 AM ben leinfelder

use default count = 1000 for CN.listObjects rather than -1 (because now -1 will cause an SQL error)

7469 12/08/2012 06:41 PM ben leinfelder

default replicaStatus to true for the CN.listObject call

7467 12/07/2012 10:39 AM ben leinfelder

make sure to call lock() on the SM when updating rightsholder (like every other method that gets a lock object from HZ).

7466 12/07/2012 10:35 AM ben leinfelder

return from test when we encounter the NotImplemented exception for CN.search()

7465 12/07/2012 10:30 AM ben leinfelder

include identifier.guid in the test SQL clause.

7464 12/07/2012 10:25 AM ben leinfelder

CN.search() id not implemented by metacat -- making that explicit and also testing for it.

7462 12/05/2012 11:04 AM ben leinfelder

default replicaStatus (aka "show replicas in results") to true rather than false

7461 12/05/2012 10:29 AM ben leinfelder

add debug statements for listObject slice debugging

7459 12/04/2012 07:23 PM Chris Jones

Add the non-snapshot jars for the D1 libraries.

7458 12/04/2012 02:32 PM ben leinfelder

use utilities and eml RC tags for building Metacat.

7457 12/04/2012 02:18 PM ben leinfelder

include dataone.contactSubject in backup properties so it will be "remembered" during upgrades.

7456 12/04/2012 02:13 PM ben leinfelder

update release date to December

7455 12/04/2012 01:57 PM ben leinfelder

additional db indexes for pathquery performance
http://bugzilla.ecoinformatics.org/show_bug.cgi?id=5696

7454 12/03/2012 02:25 PM Brendan Hahn

Do not set headers until response is ready to send (5756)

7453 12/03/2012 12:43 PM ben leinfelder

use jar generated from the git repo source (just in case it was different from svn). http://bugzilla.ecoinformatics.org/show_bug.cgi?id=5755

7452 12/03/2012 12:30 PM ben leinfelder

use dual query for query slicing - one for count, another for the actual records when requested.
https://redmine.dataone.org/issues/3065

7451 12/03/2012 11:32 AM ben leinfelder

get total (or subtotal when non-slicing params are present) count as a separate query from the field selection query.

7450 12/03/2012 10:16 AM ben leinfelder

include Skye's suggestions about correctly limiting by D1 Event types

7449 12/02/2012 11:53 AM ben leinfelder

use test doi shoulder as the default for local server, at least during testing phase. http://bugzilla.ecoinformatics.org/show_bug.cgi?id=5755

7448 12/02/2012 08:58 AM ben leinfelder

first pass at DOI minting using the EZID service in mn.generateIdentifier()
http://bugzilla.ecoinformatics.org/show_bug.cgi?id=5755

7447 11/30/2012 05:19 PM Chris Jones

Fix a minor bug in listObjects() where total was set incorrectly when total was set incorrectly when count=0. The definition of total in the D1 architecture docs says 'The total number of entries in the source list from which the slice was extracted.' With count=0, we assume the total is the total count from the entire object store. Needs testing.

7446 11/30/2012 03:23 PM ben leinfelder

remove empty package

7445 11/30/2012 02:53 PM ben leinfelder

rollback the delete() when there is an error performing part of it -- don't want to end up with partial delete.

7444 11/30/2012 02:27 PM ben leinfelder

use Identifier object not String when retrieving SM from the HZ map to set archived during delete()

7443 11/30/2012 12:17 PM ben leinfelder

for MN.update() we needed to pass the original pid, not the new pid

7442 11/30/2012 10:49 AM ben leinfelder

do not reject any schemes -- all handled the same at the moment.

7441 11/30/2012 10:23 AM ben leinfelder

simple autogen-based implementation of MN.generateIdentifier(). does not support DOIs, ARKs, etc. It does support including a fragment, returning an identifier like "<fragment>.2012113010215298206"

7440 11/29/2012 04:54 PM ben leinfelder

add link for reference on how to do record limits in oracle

7439 11/29/2012 04:52 PM ben leinfelder

limit /log and /object calls to configurable maximum count for paging. defaults to existing Metacat value of 7000

7438 11/29/2012 04:33 PM ben leinfelder

use RDBMS-specific features to limit the resultset for paging the object list -- postgres and oracle have implementations. we don''t really support mssql so I skipped that one.

7437 11/29/2012 04:12 PM ben leinfelder

use RDBMS-specific features to limit the resultset for paging -- postgres and oracle have implementations. we don''t really support mssql so I skipped that one.

7436 11/28/2012 01:53 PM Chris Jones

Add the latest SNAPSHOT build of the hazelcast jars built by robert at:

http://dev-testing.dataone.org/maven/com/hazelcast/hazelcast/2.4.1-SNAPSHOT/hazelcast-2.4.1-SNAPSHOT.jar
http://dev-testing.dataone.org/maven/com/hazelcast/hazelcast-client/2.4.1-SNAPSHOT/hazelcast-client-2.4.1-SNAPSHOT.jar...

7435 11/26/2012 02:54 PM Chris Jones

Update the hazelcast libraries based on the most recent build from the hazelcast trunk using patches that robert submitted via git pull requests.

7434 11/26/2012 02:28 PM ben leinfelder

include debug msg about removing docid from index queue. http://bugzilla.ecoinformatics.org/show_bug.cgi?id=5750