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  • svn:ignore: build
  • svn:mergeinfo: /branches/D1_0_6_2_BRANCH:6107-6121

# Date Author Comment
8986 11/19/2014 04:59 PM Jing Tao

Fixed a bug that the solr index of data files doesn't reflect the change of access control.

8984 11/19/2014 12:55 PM ben leinfelder

include schema.xml md5 checksum for 2.4.2 release.

8983 11/19/2014 12:52 PM ben leinfelder

[merge from 2.4 branch] use solr schema upgrader for 2.4.2 release -- need to replace the solr schema to include geohash fields

8979 11/19/2014 12:20 PM ben leinfelder

add 2.4.2 upgrade scripts so they are available in the 2.5.0 release as well

8978 11/19/2014 12:18 PM ben leinfelder

update documentation for trunk to use 2.5.0 release number

8977 11/19/2014 12:17 PM ben leinfelder

remove AnnotatorService completely - was moved to cn-index-processor

8974 11/19/2014 10:29 AM ben leinfelder

add annotation, orcid and orgin_combined fields to the index schema

8973 11/18/2014 02:39 PM ben leinfelder

use sparql field and triple store from cn-index_processor (refactor). include annotatorSubprocessor for testing in metacat-index

8972 11/17/2014 09:29 PM ben leinfelder

let metacat-index lookup annotations for indexing rather than the metacat "reindex" action.

8971 11/17/2014 04:30 PM Jing Tao

Add delete log for data objects on CNs.

8965 11/14/2014 12:03 PM ben leinfelder

remove dev-testing in favor of maven.dataone.org repo

8964 11/14/2014 11:20 AM ben leinfelder

only index non-empty comment text

8963 11/14/2014 11:13 AM ben leinfelder

index both tags and text from annotateit.org

8961 11/13/2014 05:59 PM ben leinfelder

query by consumerKey until the pid search facets are fully supported on annotateit.org

8960 11/10/2014 02:34 PM ben leinfelder

add JkOptions directive and encoded slash options for dataone and solr query support in the URLs that metacat can get (they were in the -ssl version of this file already)

8959 11/10/2014 02:22 PM Jing Tao

During the replication, the remote content will be saved without alteration.

8957 11/07/2014 02:42 PM Jing Tao

Merge change from 2.4 branch to trunk (removed some duplicated links)

8955 11/07/2014 11:23 AM Jing Tao

Fixed issues for login and logout on Saeon skin:
https://projects.ecoinformatics.org/ecoinfo/issues/6613'

M saeon/SaeonLogin.jspx

8953 11/05/2014 01:42 PM ben leinfelder

allow per-document reindexing to be initiated by any user (to support third-party annotations)

8952 11/03/2014 04:15 PM Jing Tao

Add junit test method for saving a metadata document with unmatched xml encoding declaration.

8951 11/03/2014 04:14 PM Jing Tao

Add a test file for unmatched xml encoding declaration.

8948 10/31/2014 05:36 PM Jing Tao

Write the input stream into the file system without alteration in dataone create and update methods.

8946 10/31/2014 05:09 PM ben leinfelder

look up annotations when reindexing a given pid. still very much a prototype in that we are looking up annotations from an external annotator-store. TODO: add pid filtering to query when annotateit.org supports it (pending upgrade on their site).

8945 10/31/2014 04:07 PM Jing Tao

add the code to install xmlstarlet.

8944 10/30/2014 07:58 PM Jing Tao

Find files of which type is link.

8943 10/30/2014 02:01 PM Jing Tao

Change the urls of dataone and geotools repositories.

8942 10/28/2014 08:23 PM Jing Tao

Keep /var/lib/postgresql/8.4/main directory.

8941 10/28/2014 04:11 PM Jing Tao

Add the code to stop tomcat and apache.

8940 10/28/2014 04:03 PM Jing Tao

Add the "-y" option to force removing the old postgresql without prompting a y/n question.

8939 10/28/2014 02:07 PM Jing Tao

Restore the database for a gzipped sql file.

8938 10/28/2014 01:35 PM Jing Tao

Added the code to gzip the output file in the dumpall command. This will save disk space.

8937 10/24/2014 03:46 PM Jing Tao

Modified the redirect rules which didn't work.

8936 10/24/2014 02:50 PM Jing Tao

Add the code to add the attribute useHttpOnly='false' to the Context element in the context.xml file.

8935 10/24/2014 01:02 PM Jing Tao

Fixed a bug the code can get the argument from the command line.

8934 10/24/2014 12:47 PM Jing Tao

Added the code to change the permission of the backup file so the postgres user can read it.

8933 10/24/2014 12:24 PM Jing Tao

Added the code to check if the metacat backup file exists.
Added the code "exist 0" at the end of the scripts.

8932 10/24/2014 12:08 PM Jing Tao

Added the .conf to those site files since the new apache server only loads the sites with the extension.

8931 10/24/2014 09:45 AM Jing Tao

Add the code to vacuum the db.

8930 10/23/2014 04:32 PM Jing Tao

Add the code to enable the 8009 port for ajp connection in the server.xml of tomcat7.

8929 10/22/2014 12:29 PM Jing Tao

Added the code to modify the geo data directory in the metacat.properties file.

8928 10/22/2014 11:43 AM Jing Tao

Fixed some bugs to restore postgresql data.

8927 10/21/2014 09:30 PM Jing Tao

Add the code install some components for installing tomcat7

8926 10/21/2014 09:13 PM Jing Tao

Use a variable to replace the hard code.

8925 10/21/2014 07:30 PM Jing Tao

Use the version directly.

8924 10/21/2014 07:28 PM Jing Tao

Fixed a typo.

8923 10/21/2014 07:26 PM Jing Tao

put the date to an output file.

8922 10/21/2014 06:56 PM Jing Tao

A script for vacuum the db.

8921 10/21/2014 06:32 PM Jing Tao

Add a script to move the db from 8.3 to 9.1 base on a dumped file.

8920 10/21/2014 10:58 AM Jing Tao

Use the pg_dumpall command to back up all information of the database.

8919 10/20/2014 07:35 PM Jing Tao

Add the code to backup the cerificate/key of the apache server.

8918 10/20/2014 04:46 PM Jing Tao

Removed the code to write the backup file to a dvd drive.

8917 10/20/2014 02:56 PM Jing Tao

Added the code to copy Metacat and other web applications from the webapps directory in tomcat6 to tomcat7.
It also update the value of deploy.applicationDir in the metacat.properties file as well.

8916 10/20/2014 01:10 PM Jing Tao

Only insert new configuration lines once to the /etc/tomcat7/catalina.properties.

8915 10/20/2014 11:34 AM Jing Tao

Used variables to replace hard code in sed command. Also we have to escape the variables.

8914 10/20/2014 11:15 AM ben leinfelder

include type="party" attribute for the divs that contain contact information (for annotating with ORCIDs)

8913 10/20/2014 09:42 AM Jing Tao

Used variables to replace the hard code.

8912 10/17/2014 06:15 PM Jing Tao

Add the code to modify the workers.properties file.

8911 10/17/2014 05:13 PM Jing Tao

Fixed typo.

8910 10/17/2014 05:02 PM ben leinfelder

use http://tools.ietf.org/rfc/rfc3023 spec for conformsTo property. use the full xpath for EML dataTable and attribute selectors

8909 10/17/2014 04:49 PM Jing Tao

Add a script to install openjdk 7 and tomcat 7.
It also configures java, javac,keytools and tomcat7.

8908 10/15/2014 04:56 PM Jing Tao

Remove an import.

8907 10/15/2014 04:56 PM Jing Tao

Removed an import.

8906 10/15/2014 04:49 PM Jing Tao

Added the junit tests to test the NotFoundException having the deleted information.

8905 10/15/2014 04:49 PM Jing Tao

Added the junit tests to test the NotFoundException having the deleted information.

8903 10/15/2014 04:34 PM Jing Tao

Added the code to inform users the pid was deleted in the NotFound exception.

8901 10/14/2014 06:11 PM Jing Tao

Added the code to check if a not-found object was deleted in the isAuthorized method.

8899 10/14/2014 06:01 PM Jing Tao

Move the code to get the object in front of the method to get the system metadata.

8897 10/14/2014 01:45 PM Jing Tao

Add a test method to test the method determining if there is a delete event for the given id.

8896 10/14/2014 01:44 PM Jing Tao

Add a utility method for determine if there is a delete event for a given id.

8893 10/10/2014 03:04 PM Jing Tao

when we remove a slor index of a resource map, we don't need to know the content of the resource map. Instead, we will search the solr index to get information.

8890 10/10/2014 02:58 PM Jing Tao

Remove the byte array field.

8889 10/10/2014 02:16 PM Jing Tao

Removed the method which had the byte array attribute.

8887 10/10/2014 02:10 PM Jing Tao

Remove the system metadata for data objects.

8884 10/10/2014 02:01 PM Jing Tao

change the way to delete the solr index of a resource map.

8883 10/10/2014 01:23 PM Jing Tao

Backup the /etc/apache2/site-enabled directory.

8882 10/09/2014 04:40 PM Jing Tao

Remove the code to stop/start ldap server.
Change the script name to stop/start tomcat.
Also backup metacat.properties.

8880 10/06/2014 10:32 PM Jing Tao

Replace the operator "=~' by "eq" in comparing the two password fields.

8877 10/06/2014 05:42 PM Jing Tao

dd a new routine to check if the uid has been taken already in the production space during the creation process.

8875 09/25/2014 09:01 AM Lauren Walker

In the EML XSLT - Add classes to the entity details containers so they can be identified easily

8874 09/23/2014 06:27 PM ben leinfelder

add /token endpoint for annotatorJS/annotateIt.org integration. https://github.com/DataONEorg/sem-prov-design/issues/18

8872 09/22/2014 06:29 PM Jing Tao

Add code to determine if a id exists in a solr server.

8871 09/19/2014 04:15 PM ben leinfelder

include resource="#xpointer(...)" attributes for sections that are potential targets for annotation. So far we have the various people (creator, contact, etc) and data table attributes. https://github.com/DataONEorg/sem-prov-design/issues/18

8869 09/18/2014 03:12 PM Jing Tao

Persitence the system metadata object in the memory before deleting it from hazelcast.

8866 09/16/2014 05:18 PM Jing Tao

Add the code to handle the delete of the resource map.

8864 09/16/2014 05:07 PM Jing Tao

Add the code to handle to remove the resource map index.

8862 09/16/2014 04:48 PM Jing Tao

Add codes to handle remove a source map solr index.

8860 09/16/2014 04:36 PM Jing Tao

Add a field to contain the content of resource map.

8859 09/15/2014 06:31 PM Jing Tao

Add a util class to judge if a namespace is a resource map file.

8857 09/15/2014 02:32 PM Lauren Walker

Create a valid URI by using all lowercase letters when creating a name for the triple model in the Rdf Xml Subprocessor. See bug: https://projects.ecoinformatics.org/ecoinfo/issues/6595

8854 09/12/2014 04:17 PM Jing Tao

Make the delete method work.

8852 09/12/2014 04:03 PM Jing Tao

Make the deleteSystemmetadata method really roll-backable.

8850 09/12/2014 03:56 PM Jing Tao

Add the code to delete systemmetadata.

8849 09/11/2014 02:37 PM ben leinfelder

remove semantic annotation proposal - moved to github: https://github.com/DataONEorg/sem-prov-design/blob/master/docs/use-cases/semantics/semantic-annotation.md

8848 09/11/2014 09:26 AM Lauren Walker

In InsertORETest: Set the format ID of the metadata object to an EML formatId so that it gets indexed correctly.

8847 09/10/2014 02:56 PM Jing Tao

Change the d1_cn_index_processor version from 1.3.0 snapshot to 2.0.0 snapshot.

8846 09/04/2014 03:24 PM Jing Tao

Add the code to delete the records in the xml_accesssubtree table.

8844 09/02/2014 02:07 PM ben leinfelder

use configured auth.base rather than hard-coded dc=ecoinformatics,dc=org. https://projects.ecoinformatics.org/ecoinfo/issues/6592

8842 08/22/2014 05:50 PM Jing Tao

Add a code to check if the pathquery engine is enabled in the checkIndexPaths method.

8841 08/21/2014 11:50 AM Jing Tao

Adjust the number of schema fields since new ones were added.

8840 08/19/2014 11:38 AM Lauren Walker

When indexing annotations from RDFs, use the doc id to access the system metadata, not the model name since they are not always the same.