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  • svn:ignore: build
  • svn:mergeinfo: /branches/D1_0_6_2_BRANCH:6107-6121

# Date Author Comment
9060 01/07/2015 12:02 PM ben leinfelder

use new IDocumentDeleteSubprocessors to handle clean-up of annotation index fields when annotations are removed.

9059 01/07/2015 12:01 PM Jing Tao

Fixed a bug that the getLogRecords can't handle the case that the event is null.

9058 01/07/2015 12:01 PM ben leinfelder

moved RDF XML subprocessor to cn-index project.

9057 01/07/2015 12:00 PM Jing Tao

Fixed a bug that the getLogRecords can't handle the case that the event is null.

9056 01/06/2015 03:32 PM Jing Tao

Add the code to check the if the new series id is legitimate in the systemMetadataChanged method.

9055 01/06/2015 02:41 PM ben leinfelder

move RDF/XML subprocessor and example configuration with SPARQL query to the cn index project from metacat so that it can be used by prov team when indexing ProvONE models in ORE documents

9054 01/06/2015 09:45 AM ben leinfelder

add fieldsToMerge property for annotation updates

9053 01/02/2015 11:01 AM ben leinfelder

add stub merge method to match Skye's recent refactoring to support reindexing when deletes are performed.

9052 12/31/2014 03:51 PM Jing Tao

Add the code to test series id in the archive, delete, isAuthorized and systemMetadataChanged method.

9051 12/31/2014 03:49 PM Jing Tao

Add the code to support the sereis id on isAuthorized and systemMetadataChanged method.

9050 12/30/2014 04:34 PM Jing Tao

Add the code to handle the sid in the delete and archive method.

9049 12/30/2014 02:10 PM Jing Tao

Add the code to test the create and update methods using invalid sid in the system metadata.

9048 12/30/2014 02:09 PM Jing Tao

Fixed a bug in comparing two identifiers in the update method.

9047 12/30/2014 11:04 AM Jing Tao

Add a check that the sid shouldn't equals the pid in the update and create method.

9046 12/29/2014 05:10 PM Jing Tao

Add the code the check if the format of the sid is valid in the system metadata.

9045 12/29/2014 05:06 PM Jing Tao

Add the enforcement for the sid in the create method.

9044 12/29/2014 04:26 PM Jing Tao

Enforce the sid requirement in the update method.

9043 12/29/2014 03:03 PM Jing Tao

Check if the identifier is a sid for the v1 update.

9042 12/29/2014 02:35 PM Jing Tao

Add the code to test getChecksum.

9041 12/29/2014 12:23 PM Jing Tao

Add the code to handle the deleted identifier in the checking v1 system metadata existing method.

9040 12/29/2014 11:42 AM Jing Tao

Enforce the mn.getChecksum only to handle an PID.

9039 12/24/2014 03:43 PM Jing Tao

Add the test code for getSystemMetadata(sid) and describe(sid).

9038 12/24/2014 11:41 AM Jing Tao

Add the series id to the system metadata.

9037 12/24/2014 09:47 AM Jing Tao

Implement the series id in the getSystemMetadata method.

9036 12/23/2014 04:53 PM Jing Tao

Looking for sid for the method describe.

9035 12/23/2014 12:03 PM Jing Tao

Add two updates on the testGetSID method.

9034 12/23/2014 11:34 AM Jing Tao

Add the code to test getting test series ids.

9033 12/22/2014 02:31 PM Jing Tao

Refactor the code to check a pid exists in the v1 api.

9032 12/19/2014 04:59 PM Jing Tao

Modified the get method to handle the sid in the v2 api.

9031 12/19/2014 03:13 PM Jing Tao

Change methods'name base on the change on the source code.

9030 12/19/2014 03:10 PM Jing Tao

Change a method name to use pid rather than guid.

9029 12/19/2014 11:19 AM Jing Tao

Add the code to test the methods of determining if a sid or guid exists.

9028 12/18/2014 04:34 PM ben leinfelder

use refactored classes from cn-index-processor. still in flux, but improving to better handle non-xml files

9027 12/17/2014 04:58 PM Jing Tao

Add a test method to the method to get head version of a sid.

9026 12/17/2014 04:57 PM Jing Tao

Add the code to get the most recent version of a sid which all pids are obsoleted.

9025 12/17/2014 02:13 PM Jing Tao

Change the test method base on the change of throwing a new sql exception on the getLocalId method.

9024 12/16/2014 06:50 PM Jing Tao

Fixed a bug that the method getLocalId swallowed an exception incorrectly in the IdentifierManager.

9023 12/12/2014 04:25 PM Jing Tao

Fixed a bug that some service failure exceptions were handled as the NotFound exception.

9022 12/12/2014 02:12 PM ben leinfelder

add accessors for bean property

9021 12/12/2014 01:53 PM ben leinfelder

use ISolrDataField because RDF subprocessor uses the SparqlField subclass.

9020 12/12/2014 01:30 PM ben leinfelder

use input stream instead of Document for resource map processing test

9019 12/12/2014 01:16 PM Jing Tao

Change the number of the schema feilds.

9018 12/12/2014 01:12 PM ben leinfelder

update classes and context files that use cn-index-processor classes. allowing document subprocessors to be less tied to XML.

9017 12/11/2014 03:24 PM Jing Tao

1. In the identifierExists method, the code to check if the identifier exist on the serial-id fields of the system metadata table.
2. Fixed a bug on the identifierExists - it considered an identifier didn't exist when the determining process threw an exception.

9016 12/10/2014 04:33 PM Jing Tao

Add a method to check if a serial id exists.

9015 12/09/2014 05:03 PM Jing Tao

Add a method to get the pid of the head version of a sid.

9014 12/09/2014 01:10 PM ben leinfelder

add Annotator Store implementation -- pass through to D1 API for the AnnotatorJS API

9013 12/09/2014 01:05 PM ben leinfelder

remove annotator service test -- this feature has been moved upstream

9012 12/09/2014 08:38 AM ben leinfelder

use 2.5.0 for current DB version

9011 12/02/2014 05:15 PM Jing Tao

Don't remove postgresql 8.4 and 9.1
Don't remove data directory of postgresql 8.4

9010 12/02/2014 04:21 PM ben leinfelder

use getCookie action now that portal has different getToken action.

9009 12/02/2014 02:08 PM ben leinfelder

include person's full name in the JWT returned from /token

9005 11/24/2014 09:26 AM Jing Tao

Overwrite the default node id (which value is metacat) from the metacat.properties. Otherwise, the test will fail.

9003 11/22/2014 02:30 PM Jing Tao

Add the code to install the build-essential package.

9002 11/22/2014 02:25 PM Jing Tao

Merge the java 1.6 support node for 2.4.2 release.

8997 11/20/2014 10:00 AM ben leinfelder

merge updates from 2.4.2 changes

8993 11/20/2014 09:21 AM Chris Jones

Merge changes in the 2.4 branch into the trunk for the ORNL Mercury schema support. References https://projects.ecoinformatics.org/ecoinfo/issues/6619.

This schema is maintained by Jim Green () and Ranjeet Devarakonda (). The schema uses a subset of the FGDC 1998 CSDGM elements, along with custom elements specific to the Mercury Metadata web application. Support is included in Metacat for Coordinating Node operations in the DataONE network.

8991 11/20/2014 09:00 AM Jing Tao

Fixed a bug that the reindex of data objects may index an archived data object.

8986 11/19/2014 04:59 PM Jing Tao

Fixed a bug that the solr index of data files doesn't reflect the change of access control.

8984 11/19/2014 12:55 PM ben leinfelder

include schema.xml md5 checksum for 2.4.2 release.

8983 11/19/2014 12:52 PM ben leinfelder

[merge from 2.4 branch] use solr schema upgrader for 2.4.2 release -- need to replace the solr schema to include geohash fields

8979 11/19/2014 12:20 PM ben leinfelder

add 2.4.2 upgrade scripts so they are available in the 2.5.0 release as well

8978 11/19/2014 12:18 PM ben leinfelder

update documentation for trunk to use 2.5.0 release number

8977 11/19/2014 12:17 PM ben leinfelder

remove AnnotatorService completely - was moved to cn-index-processor

8974 11/19/2014 10:29 AM ben leinfelder

add annotation, orcid and orgin_combined fields to the index schema

8973 11/18/2014 02:39 PM ben leinfelder

use sparql field and triple store from cn-index_processor (refactor). include annotatorSubprocessor for testing in metacat-index

8972 11/17/2014 09:29 PM ben leinfelder

let metacat-index lookup annotations for indexing rather than the metacat "reindex" action.

8971 11/17/2014 04:30 PM Jing Tao

Add delete log for data objects on CNs.

8965 11/14/2014 12:03 PM ben leinfelder

remove dev-testing in favor of maven.dataone.org repo

8964 11/14/2014 11:20 AM ben leinfelder

only index non-empty comment text

8963 11/14/2014 11:13 AM ben leinfelder

index both tags and text from annotateit.org

8961 11/13/2014 05:59 PM ben leinfelder

query by consumerKey until the pid search facets are fully supported on annotateit.org

8960 11/10/2014 02:34 PM ben leinfelder

add JkOptions directive and encoded slash options for dataone and solr query support in the URLs that metacat can get (they were in the -ssl version of this file already)

8959 11/10/2014 02:22 PM Jing Tao

During the replication, the remote content will be saved without alteration.

8957 11/07/2014 02:42 PM Jing Tao

Merge change from 2.4 branch to trunk (removed some duplicated links)

8955 11/07/2014 11:23 AM Jing Tao

Fixed issues for login and logout on Saeon skin:
https://projects.ecoinformatics.org/ecoinfo/issues/6613'

M saeon/SaeonLogin.jspx

8953 11/05/2014 01:42 PM ben leinfelder

allow per-document reindexing to be initiated by any user (to support third-party annotations)

8952 11/03/2014 04:15 PM Jing Tao

Add junit test method for saving a metadata document with unmatched xml encoding declaration.

8951 11/03/2014 04:14 PM Jing Tao

Add a test file for unmatched xml encoding declaration.

8948 10/31/2014 05:36 PM Jing Tao

Write the input stream into the file system without alteration in dataone create and update methods.

8946 10/31/2014 05:09 PM ben leinfelder

look up annotations when reindexing a given pid. still very much a prototype in that we are looking up annotations from an external annotator-store. TODO: add pid filtering to query when annotateit.org supports it (pending upgrade on their site).

8945 10/31/2014 04:07 PM Jing Tao

add the code to install xmlstarlet.

8944 10/30/2014 07:58 PM Jing Tao

Find files of which type is link.

8943 10/30/2014 02:01 PM Jing Tao

Change the urls of dataone and geotools repositories.

8942 10/28/2014 08:23 PM Jing Tao

Keep /var/lib/postgresql/8.4/main directory.

8941 10/28/2014 04:11 PM Jing Tao

Add the code to stop tomcat and apache.

8940 10/28/2014 04:03 PM Jing Tao

Add the "-y" option to force removing the old postgresql without prompting a y/n question.

8939 10/28/2014 02:07 PM Jing Tao

Restore the database for a gzipped sql file.

8938 10/28/2014 01:35 PM Jing Tao

Added the code to gzip the output file in the dumpall command. This will save disk space.

8937 10/24/2014 03:46 PM Jing Tao

Modified the redirect rules which didn't work.

8936 10/24/2014 02:50 PM Jing Tao

Add the code to add the attribute useHttpOnly='false' to the Context element in the context.xml file.

8935 10/24/2014 01:02 PM Jing Tao

Fixed a bug the code can get the argument from the command line.

8934 10/24/2014 12:47 PM Jing Tao

Added the code to change the permission of the backup file so the postgres user can read it.

8933 10/24/2014 12:24 PM Jing Tao

Added the code to check if the metacat backup file exists.
Added the code "exist 0" at the end of the scripts.

8932 10/24/2014 12:08 PM Jing Tao

Added the .conf to those site files since the new apache server only loads the sites with the extension.

8931 10/24/2014 09:45 AM Jing Tao

Add the code to vacuum the db.

8930 10/23/2014 04:32 PM Jing Tao

Add the code to enable the 8009 port for ajp connection in the server.xml of tomcat7.

8929 10/22/2014 12:29 PM Jing Tao

Added the code to modify the geo data directory in the metacat.properties file.

8928 10/22/2014 11:43 AM Jing Tao

Fixed some bugs to restore postgresql data.

8927 10/21/2014 09:30 PM Jing Tao

Add the code install some components for installing tomcat7