Metacat

/**

 *    Purpose: A Class that implements org.xml.sax.EntityResolver interface

 *             for resolving external entities

 *  Copyright: 2000 Regents of the University of California and the

 *             National Center for Ecological Analysis and Synthesis

 *     '$Date$'

 * '$Revision$'

 * This program is free software; you can redistribute it and/or modify

 * it under the terms of the GNU General Public License as published by

 * the Free Software Foundation; either version 2 of the License, or

 * (at your option) any later version.

 *

 * This program is distributed in the hope that it will be useful,

 * but WITHOUT ANY WARRANTY; without even the implied warranty of

 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the

 * GNU General Public License for more details.

 *

 * You should have received a copy of the GNU General Public License

 * along with this program; if not, write to the Free Software

 * Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA  02111-1307  USA

import edu.ucsb.nceas.metacat.database.DBConnectionPool;

import edu.ucsb.nceas.utilities.PropertyNotFoundException;

import java.io.BufferedReader;

import java.io.BufferedWriter;

import java.io.IOException;

import java.net.MalformedURLException;

 * A database aware Class implementing EntityResolver interface for the SAX

 * parser to call when processing the XML stream and intercepting any

 * external entities (including the external DTD subset and external

public class DBEntityResolver implements EntityResolver

{

  private String docname = null;

  private String doctype = null;

  private String systemid = null;

  private Reader dtdtext = null;

   *

   * @param conn the JDBC connection to which information is written

   *

   * @param conn the JDBC connection to which information is written

   * @param dtd Reader of new dtd to be uploaded on server's file system

   */

    this.dtdtext = dtd;

  }

  /**

   * The Parser call this method before opening any external entity

   */

  public InputSource resolveEntity (String publicId, String systemId)

                     throws SAXException

  {

    logMetacat.debug("DBEntityResolver.resolveEntity - in resolveEntity "+" the public id is "+publicId+" and systemId is "+systemId);

    String doctype = null;

    if ( handler != null ) {

        DBSAXHandler dhandler = null;

        dhandler = (DBSAXHandler)handler;

        if ( dhandler.processingDTD() ) {

          if(doctype == null || doctype.trim().equals("")) {

              //we can't determine the public id or the name of the root element in for this dtd defined xml document

              logMetacat.error("DBEntityResolver.resolveEntity - "+message);

              throw new SAXException(message);

          } else {

              logMetacat.debug("DBEntityResolver.resolveEntity - the final doctype for DBSAXHandler "+doctype);

          }

        ahandler = (AccessControlList)handler;

                    + doctype);

                    + doctype);

              //we can't determine the public id or the name of the root element in for this dtd defined xml document

              logMetacat.error("DBEntityResolver.resolveEntity - "+message);

              throw new SAXException(message);

          } else {

              logMetacat.debug("DBEntityResolver.resolveEntity - the final doctype for AccessControList "+doctype);

          }

        } else {

            logMetacat.debug("DBEntityResolver.resolveEntity - the method resolverEntity for the AccessControList class is not processing a dtd");

        }

          logMetacat.debug("DBEntityResolver.resolveEntity - in the branch of the other handler class");

    if (doctype != null) {

          throw new SAXException("The doctype: "+doctype+" , which was defined by a DTD document, isn't registered in Metacat. Please contact the operator of the Metacat");

      try {

    	  InputStream in = checkURLConnection(dbSystemID);

	      throw se;

		  // back at this system  Try and download it from the original system id and see if we still have a problem

		  // checking the URL connection.

		  uploadDTDFromURL(istream, systemId);

		  try {

		  } catch (Exception e2) {

			  dbSystemID = null;

      if (dbSystemID == null) {

        doctypeIsInDB = false;

        // use the provided System ID

        if (systemId != null) {

          dbSystemID = systemId;

        }

                                 + "system id from file: " + dbSystemID);

      // there are dtd text provided; try to upload on Metacat

      if ( dtdtext != null ) {

        dbSystemID = uploadDTD(dbSystemID);

      }

      // need to register System ID in db XML Catalog if not yet

      if ( !doctypeIsInDB ) {

        if ( dtdtext == null ) {

          dbSystemID = uploadDTDFromURL(istream, dbSystemID);

        }

      }

      // return a byte-input stream for use

      // close and open URLConnection again

      try {

        istream.close();

      } catch (IOException e) {

      //return null;

   * Return null if there are no System ID found for @doctype

   */

  {

    String systemid = null;

    int serialNumber = -1;

      conn=DBConnectionPool.getDBConnection("DBEntityResolver.getDTDSystemID");

      serialNumber=conn.getCheckOutSerialNumber();

      "WHERE entry_type = 'DTD' AND public_id = ?";

      pstmt = conn.prepareStatement(sql);

      pstmt.setString(1, doctype);

      pstmt.execute();

      if (tableHasRows) {

        systemid = rs.getString(1);

        if (!systemid.startsWith("http://")) {

      throw new SAXException

        throw new SAXException

    {

      try

      {

              rs.close();

          }

          if(pstmt != null) {

              pstmt.close();

          }

      catch (SQLException sqlE)

      {

      finally

      {

        DBConnectionPool.returnDBConnection(conn, serialNumber);

      }//finally

    }//finally

    // return the selected System ID

    return systemid;

  }

   * Register new DTD identified by @systemId in Metacat XML Catalog

   */

  private void registerDTD ( String doctype, String systemId )

                 throws SAXException

  {

	  if (existingSystemId != null && existingSystemId.equals(systemId)) {

	  }

    //int serialNumber = -1;

    PreparedStatement pstmt = null;

    try {

      //conn=DBConnectionPool.getDBConnection("DBEntityResolver.registerDTD");

      //serialNumber=conn.getCheckOutSerialNumber();

             "VALUES ('DTD', ?, ?)");

      connection.increaseUsageCount(1);

      pstmt.setString(1, doctype);

      pstmt.setString(2, systemId);

      // Do the insertion

      pstmt.execute();

    } catch (SQLException e) {

      throw new SAXException

    {

      try

      {

        pstmt.close();

      }//try

      catch (SQLException sqlE)

      {

      //DBConnectionPool.returnDBConnection(conn, serialNumber);

    }//finally

	 *

	 * @systemId to Metacat file system

	 */

	private String uploadDTD(String systemId) throws SAXException {

		String dtdPath = null;

		String dtdURL = null;

		try {

			dtdPath = SystemUtil.getContextDir() + "/dtd/";

			dtdURL = SystemUtil.getContextURL() + "/dtd/";

		} catch (PropertyNotFoundException pnfe) {

			throw new SAXException("DBEntityResolver.uploadDTD: " + pnfe.getMessage());

		}

		String filename = systemId;

		int slash = Math.max(filename.lastIndexOf('/'), filename.lastIndexOf('\\'));

		if (slash > -1) {

			filename = filename.substring(slash + 1);

		}

		try {

			// create a buffering character-input stream

			// that uses a default-sized input buffer

			BufferedReader in = new BufferedReader(dtdtext);

			// String dtdPath = "/opt/tomcat/webapps/bojilova/dtd/";

			File f = new File(dtdPath, filename);

			synchronized (f) {

				try {

					if (f.exists()) {

						throw new IOException("File already exist: "

								+ f.getCanonicalFile());

						// if ( f.exists() && !f.canWrite() ) {

						// throw new IOException("Not writable: " +

						// f.getCanonicalFile());

					}

				} catch (SecurityException se) {

					// if a security manager exists,

					// its checkRead method is called for f.exist()

					// or checkWrite method is called for f.canWrite()

					throw se;

				}

				// create a buffered character-output stream

				// that uses a default-sized output buffer

				FileWriter fw = new FileWriter(f);

				BufferedWriter out = new BufferedWriter(fw);

				String inputLine;

				while ((inputLine = in.readLine()) != null) {

					out.write(inputLine, 0, inputLine.length());

					out.newLine(); // instead of out.write('\r\n');

				}

				in.close();

				out.flush();

				out.close();

				fw.close();

			} // end of synchronized

		} catch (MalformedURLException e) {

		return dtdURL + filename;

	}

	 */

	private String uploadDTDFromURL(InputStream istream, String systemId)

			throws SAXException {

		String dtdPath = null;

		String dtdURL = null;

		try {

			dtdPath = SystemUtil.getContextDir() + "/dtd/";

			dtdURL = SystemUtil.getContextURL() + "/dtd/";

		} catch (PropertyNotFoundException pnfe) {

		}

		String filename = systemId;

		int slash = Math.max(filename.lastIndexOf('/'), filename.lastIndexOf('\\'));

		if (slash > -1) {

			filename = filename.substring(slash + 1);

		}

		try {

			// create a buffering character-input stream

			// that uses a default-sized input buffer

			BufferedInputStream in = new BufferedInputStream(istream);

			//String dtdPath = "/opt/tomcat/webapps/bojilova/dtd/";

			File f = new File(dtdPath, filename);

			synchronized (f) {

				try {

					if (f.exists()) {

						//throw new IOException("File already exist: "

						//		+ f.getCanonicalFile());

						//  throw new IOException("Not writable: " + f.getCanonicalFile());

					}

				} catch (SecurityException se) {

					// if a security manager exists,

					// its checkRead method is called for f.exist()

					// or checkWrite method is called for f.canWrite()

					throw se;

				}

				// create a buffered character-output stream

				// that uses a default-sized output buffer

				FileWriter fw = new FileWriter(f);

				BufferedWriter out = new BufferedWriter(fw);

				int inputByte;

				while ((inputByte = in.read()) != -1) {

					out.write(inputByte);

					//out.newLine(); //instead of out.write('\r\n');

				}

				in.close();

				out.flush();

				out.close();

				fw.close();

			} // end of synchronized

		} catch (MalformedURLException e) {

		} catch (IOException e) {

		} catch (SecurityException e) {

		}

		return dtdURL + filename;

	}

	 * Check URL Connection for @systemId, and return an InputStream

	 * that can be used to read from the systemId URL.  The parser ends

	 * up using this via the InputSource to read the DTD.

	 *

	 * @param systemId a URI (in practice URL) to be checked and opened

	 */

	public static InputStream checkURLConnection(String systemId) throws SAXException {

		try {

			return (new URL(systemId).openStream());

		} catch (IOException e) {

		}

	}