| 1 |
5371
|
berkley
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CREATE TABLE systemMetadata (
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| 2 |
6136
|
leinfelder
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guid text, -- the globally unique string identifier of the object that the system metadata describes
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| 3 |
6561
|
leinfelder
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serial_version VARCHAR(256), --the serial version of the object
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| 4 |
6136
|
leinfelder
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date_uploaded TIMESTAMP, -- the date/time the document was first submitted
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| 5 |
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rights_holder VARCHAR(250), --the user who has rights to the document, usually the first persons to upload it
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checksum VARCHAR(512), --the checksum of the doc using the given algorithm (see below)
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checksum_algorithm VARCHAR(250), --the algorithm used to calculate the checksum
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origin_member_node VARCHAR(250), --the member node where the document was first uploaded
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authoritive_member_node VARCHAR(250), --the member node that currently controls the document
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| 10 |
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date_modified TIMESTAMP, -- the last date/time that the file was changed
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| 11 |
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submitter VARCHAR(256), -- the user who originally submitted the doc
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| 12 |
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object_format VARCHAR(256), --the format of the object
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size VARCHAR(256), --the size of the object
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| 14 |
6766
|
leinfelder
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archived boolean, -- specifies whether this an archived object
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6136
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leinfelder
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replication_allowed boolean, -- replication allowed
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| 16 |
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number_replicas INT8, -- the number of replicas allowed
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6375
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leinfelder
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obsoletes text, -- the identifier that this record obsoletes
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obsoleted_by text, -- the identifier of the record that replaces this record
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| 19 |
6136
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leinfelder
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CONSTRAINT systemMetadata_pk PRIMARY KEY (guid)
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5371
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berkley
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);
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| 22 |
6136
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leinfelder
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CREATE TABLE systemMetadataReplicationPolicy (
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guid text, -- the globally unique string identifier of the object that the system metadata describes
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member_node VARCHAR(250), -- replication member node
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policy text, -- the policy (preferred, blocked, etc...TBD)
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CONSTRAINT systemMetadataReplicationPolicy_fk
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6933
|
jones
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FOREIGN KEY (guid) REFERENCES systemMetadata DEFERRABLE
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6136
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leinfelder
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);
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CREATE TABLE systemMetadataReplicationStatus (
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guid text, -- the globally unique string identifier of the object that the system metadata describes
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member_node VARCHAR(250), -- replication member node
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| 33 |
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status VARCHAR(250), -- replication status
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| 34 |
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date_verified TIMESTAMP, -- the date replication was verified
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| 35 |
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CONSTRAINT systemMetadataReplicationStatus_fk
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| 36 |
6933
|
jones
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FOREIGN KEY (guid) REFERENCES systemMetadata DEFERRABLE
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| 37 |
6136
|
leinfelder
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);
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| 38 |
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| 39 |
6583
|
leinfelder
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/*
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* Remove the old Identifier table (pre-2.0)
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| 41 |
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*/
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| 42 |
6945
|
leinfelder
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DROP TABLE IF EXISTS identifier;
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| 43 |
6583
|
leinfelder
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/*
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* Create the new one (DataONE features)
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| 45 |
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*/
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| 46 |
5276
|
jones
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CREATE TABLE identifier (
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guid text, -- the globally unique string identifier
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| 48 |
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docid VARCHAR(250), -- the local document id #
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| 49 |
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rev INT8, -- the revision part of the local identifier
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| 50 |
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CONSTRAINT identifier_pk PRIMARY KEY (guid)
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);
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| 52 |
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| 53 |
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/*
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| 54 |
6012
|
leinfelder
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* add the nodedatadate column to the tables that need it
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| 55 |
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*/
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| 56 |
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ALTER TABLE xml_nodes ADD COLUMN nodedatadate TIMESTAMP;
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| 57 |
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ALTER TABLE xml_nodes_revisions ADD COLUMN nodedatadate TIMESTAMP;
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ALTER TABLE xml_path_index ADD COLUMN nodedatadate TIMESTAMP;
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| 59 |
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CREATE INDEX xml_path_index_idx5 ON xml_path_index (nodedatadate);
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| 60 |
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| 61 |
6542
|
leinfelder
|
/**
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| 62 |
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* track the user-agent for the request
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| 63 |
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*/
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| 64 |
6730
|
tao
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ALTER TABLE access_log ADD COLUMN user_agent VARCHAR(512);
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| 65 |
6542
|
leinfelder
|
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| 66 |
6136
|
leinfelder
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/*
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| 67 |
6658
|
leinfelder
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* Register the new schema
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| 68 |
5400
|
jones
|
*/
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| 69 |
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INSERT INTO xml_catalog (entry_type, public_id, system_id)
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5709
|
leinfelder
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VALUES ('Schema', '@eml2_1_1namespace@', '/schema/eml-2.1.1/eml.xsd');
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| 71 |
6744
|
leinfelder
|
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| 72 |
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/**
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| 73 |
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* Generate GUIDs for docid.rev
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| 74 |
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*/
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| 75 |
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INSERT INTO identifier (docid, rev, guid)
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6952
|
leinfelder
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SELECT docid, rev, docid || '.' || rev FROM xml_documents
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| 77 |
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UNION
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| 78 |
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SELECT docid, rev, docid || '.' || rev FROM xml_revisions;
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| 79 |
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--INSERT 0 156644
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| 80 |
6946
|
leinfelder
|
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| 81 |
6744
|
leinfelder
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/**
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| 82 |
6760
|
leinfelder
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* Add guid in xml_access table
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| 83 |
6744
|
leinfelder
|
*/
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| 84 |
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ALTER TABLE xml_access ADD COLUMN guid text;
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| 85 |
6923
|
leinfelder
|
/**
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| 86 |
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* Expand accessfileid in xml_access table to hold guids
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| 87 |
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*/
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| 88 |
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ALTER TABLE xml_access ALTER COLUMN accessfileid TYPE text;
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| 89 |
6744
|
leinfelder
|
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| 90 |
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/**
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| 91 |
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* Upgrade xml_access records to use GUID from identifier table
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| 92 |
6760
|
leinfelder
|
* NOTE: This duplicates existing access rules for every revision of a document
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| 93 |
6744
|
leinfelder
|
*/
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| 94 |
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INSERT INTO xml_access (
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| 95 |
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guid, principal_name, permission, perm_type, perm_order,
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| 96 |
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docid, accessfileid, begin_time, end_time, ticket_count, subtreeid, startnodeid, endnodeid
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| 97 |
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)
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| 98 |
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SELECT
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| 99 |
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id.guid, xa.principal_name, xa.permission, xa.perm_type, xa.perm_order,
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| 100 |
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xa.docid, xa.accessfileid, xa.begin_time, xa.end_time, xa.ticket_count, xa.subtreeid, xa.startnodeid, xa.endnodeid
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| 101 |
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FROM identifier id, xml_access xa
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| 102 |
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WHERE id.docid = xa.docid;
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| 103 |
6952
|
leinfelder
|
--INSERT 0 311224
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| 104 |
6744
|
leinfelder
|
|
| 105 |
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/**
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| 106 |
6760
|
leinfelder
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* Include inline data access rows -- they have a special guid: 'scope.docid.rev.index'
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| 107 |
6744
|
leinfelder
|
*/
|
| 108 |
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INSERT INTO xml_access (
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| 109 |
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guid, principal_name, permission, perm_type, perm_order,
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| 110 |
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docid, accessfileid, begin_time, end_time, ticket_count, subtreeid, startnodeid, endnodeid
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| 111 |
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)
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| 112 |
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SELECT
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| 113 |
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docid, principal_name, permission, perm_type, perm_order,
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| 114 |
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docid, accessfileid, begin_time, end_time, ticket_count, subtreeid, startnodeid, endnodeid
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| 115 |
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FROM xml_access
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| 116 |
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WHERE docid like '%.%.%.%';
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| 117 |
6952
|
leinfelder
|
--INSERT 0 18
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| 118 |
6744
|
leinfelder
|
|
| 119 |
6947
|
leinfelder
|
|
| 120 |
6744
|
leinfelder
|
/**
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| 121 |
6762
|
leinfelder
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* Update the accessfileid to use their guid
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| 122 |
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* NOTE: uses the last revision's guid as the new value for accessfileid
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| 123 |
6947
|
leinfelder
|
* uses a temporary table
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| 124 |
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**/
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| 125 |
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| 126 |
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CREATE TABLE max_identifier (guid text, docid VARCHAR(250), rev INT8);
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| 127 |
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| 128 |
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/** insert the max rev identifier for each document **/
|
| 129 |
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INSERT INTO max_identifier (docid, rev, guid)
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| 130 |
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SELECT docid, MAX(rev), docid || '.' || MAX(rev)
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| 131 |
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FROM identifier
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| 132 |
6949
|
leinfelder
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GROUP BY docid;
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| 133 |
6952
|
leinfelder
|
--INSERT 0 57841
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| 134 |
6947
|
leinfelder
|
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| 135 |
6952
|
leinfelder
|
/** create some indexes to speed up the join **/
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| 136 |
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CREATE INDEX maxid_docid_index ON max_identifier (docid);
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| 137 |
7386
|
leinfelder
|
CREATE INDEX maxid_guid_index ON max_identifier (guid);
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| 138 |
6952
|
leinfelder
|
CREATE INDEX accessfileid_index on xml_access (accessfileid);
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| 139 |
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CREATE INDEX xml_access_guid_index on xml_access (guid);
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| 140 |
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| 141 |
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UPDATE xml_access xa
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| 142 |
6947
|
leinfelder
|
SET accessfileid = maxid.guid
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| 143 |
6952
|
leinfelder
|
FROM max_identifier maxid
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| 144 |
6947
|
leinfelder
|
WHERE xa.accessfileid = maxid.docid
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| 145 |
6949
|
leinfelder
|
AND xa.guid IS NOT null;
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| 146 |
6952
|
leinfelder
|
--UPDATE 310427
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| 147 |
6744
|
leinfelder
|
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| 148 |
6952
|
leinfelder
|
DROP INDEX maxid_docid_index;
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| 149 |
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DROP INDEX maxid_guid_index;
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| 150 |
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DROP INDEX accessfileid_index;
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| 151 |
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DROP INDEX xml_access_guid_index;
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| 152 |
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| 153 |
6947
|
leinfelder
|
DROP TABLE max_identifier;
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| 154 |
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| 155 |
6744
|
leinfelder
|
/**
|
| 156 |
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* Remove old access rules
|
| 157 |
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*/
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| 158 |
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DELETE FROM xml_access WHERE guid is null;
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| 159 |
6952
|
leinfelder
|
--DELETE 105432
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| 160 |
6744
|
leinfelder
|
|
| 161 |
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/**
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| 162 |
|
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* clean up the xml_access table
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| 163 |
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*/
|
| 164 |
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ALTER TABLE xml_access DROP COLUMN docid;
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| 165 |
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| 166 |
7053
|
leinfelder
|
|
| 167 |
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/**
|
| 168 |
|
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* expand xml_path_index 'path' column to hold larger strings
|
| 169 |
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*/
|
| 170 |
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ALTER TABLE xml_path_index ALTER COLUMN path TYPE text;
|
| 171 |
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|
| 172 |
7194
|
leinfelder
|
/**
|
| 173 |
|
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* include 2.0.0beta4 DTD
|
| 174 |
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*/
|
| 175 |
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INSERT INTO xml_catalog (entry_type, public_id, system_id)
|
| 176 |
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VALUES ('DTD', '-//ecoinformatics.org//eml-access-@eml-beta4-version@//EN',
|
| 177 |
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'/dtd/eml-access-@eml-beta4-version@.dtd');
|
| 178 |
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INSERT INTO xml_catalog (entry_type, public_id, system_id)
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| 179 |
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VALUES ('DTD', '-//ecoinformatics.org//eml-attribute-@eml-beta4-version@//EN',
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| 180 |
|
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'/dtd/eml-attribute-@eml-beta4-version@.dtd');
|
| 181 |
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INSERT INTO xml_catalog (entry_type, public_id, system_id)
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| 182 |
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VALUES ('DTD', '-//ecoinformatics.org//eml-constraint-@eml-beta4-version@//EN',
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| 183 |
|
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'/dtd/eml-constraint-@eml-beta4-version@.dtd');
|
| 184 |
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INSERT INTO xml_catalog (entry_type, public_id, system_id)
|
| 185 |
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VALUES ('DTD', '-//ecoinformatics.org//eml-coverage-@eml-beta4-version@//EN',
|
| 186 |
|
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'/dtd/eml-coverage-@eml-beta4-version@.dtd');
|
| 187 |
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INSERT INTO xml_catalog (entry_type, public_id, system_id)
|
| 188 |
|
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VALUES ('DTD', '-//ecoinformatics.org//eml-dataset-@eml-beta4-version@//EN',
|
| 189 |
|
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'/dtd/eml-dataset-@eml-beta4-version@.dtd');
|
| 190 |
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INSERT INTO xml_catalog (entry_type, public_id, system_id)
|
| 191 |
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VALUES ('DTD', '-//ecoinformatics.org//eml-entity-@eml-beta4-version@//EN',
|
| 192 |
|
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'/dtd/eml-entity-@eml-beta4-version@.dtd');
|
| 193 |
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INSERT INTO xml_catalog (entry_type, public_id, system_id)
|
| 194 |
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VALUES ('DTD', '-//ecoinformatics.org//eml-literature-@eml-beta4-version@//EN',
|
| 195 |
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'/dtd/eml-literature-@eml-beta4-version@.dtd');
|
| 196 |
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INSERT INTO xml_catalog (entry_type, public_id, system_id)
|
| 197 |
|
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VALUES ('DTD', '-//ecoinformatics.org//eml-physical-@eml-beta4-version@//EN',
|
| 198 |
|
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'/dtd/eml-physical-@eml-beta4-version@.dtd');
|
| 199 |
|
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INSERT INTO xml_catalog (entry_type, public_id, system_id)
|
| 200 |
|
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VALUES ('DTD', '-//ecoinformatics.org//eml-project-@eml-beta4-version@//EN',
|
| 201 |
|
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'/dtd/eml-project-@eml-beta4-version@.dtd');
|
| 202 |
|
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INSERT INTO xml_catalog (entry_type, public_id, system_id)
|
| 203 |
|
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VALUES ('DTD', '-//ecoinformatics.org//eml-protocol-@eml-beta4-version@//EN',
|
| 204 |
|
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'/dtd/eml-protocol-@eml-beta4-version@.dtd');
|
| 205 |
|
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INSERT INTO xml_catalog (entry_type, public_id, system_id)
|
| 206 |
|
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VALUES ('DTD', '-//ecoinformatics.org//eml-software-@eml-beta4-version@//EN',
|
| 207 |
|
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'/dtd/eml-software-@eml-beta4-version@.dtd');
|
| 208 |
|
|
|
| 209 |
5400
|
jones
|
/*
|
| 210 |
5276
|
jones
|
* update the database version
|
| 211 |
|
|
*/
|
| 212 |
|
|
UPDATE db_version SET status=0;
|
| 213 |
|
|
|
| 214 |
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INSERT INTO db_version (version, status, date_created)
|
| 215 |
6550
|
leinfelder
|
VALUES ('2.0.0', 1, CURRENT_DATE);
|