/docs/index-all.html - Metacat - Ecoinformatics Redmine

metacat/docs/index-all.html @ 210

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       MetaCat API: Index
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         <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <FONT CLASS="NavBarFont1">Package</FONT>&nbsp;</TD>
         <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <FONT CLASS="NavBarFont1">Class</FONT>&nbsp;</TD>
         <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <FONT CLASS="NavBarFont1">Use</FONT>&nbsp;</TD>
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       <A HREF="#_A_">A</A> <A HREF="#_B_">B</A> <A HREF="#_C_">C</A> <A HREF="#_D_">D</A> <A HREF="#_E_">E</A> <A HREF="#_F_">F</A> <A HREF="#_G_">G</A> <A HREF="#_I_">I</A> <A HREF="#_M_">M</A> <A HREF="#_N_">N</A> <A HREF="#_O_">O</A> <A HREF="#_P_">P</A> <A HREF="#_Q_">Q</A> <A HREF="#_R_">R</A> <A HREF="#_S_">S</A> <A HREF="#_T_">T</A> <A HREF="#_U_">U</A> <A HREF="#_V_">V</A> <A HREF="#_W_">W</A> <HR>
       <A NAME="_A_"><!-- --></A><H2>
       <B>A</B></H2>
       <DL>
       <DT><A HREF="edu/ucsb/nceas/metacat/AccessionNumber.html"><B>AccessionNumber</B></A> - class edu.ucsb.nceas.metacat.<A HREF="edu/ucsb/nceas/metacat/AccessionNumber.html">AccessionNumber</A>.<DD>A class that generates an Accession Number and will check a submitted
        accession number for uniqueness and register it into the db connection<DT><A HREF="edu/ucsb/nceas/metacat/AccessionNumber.html#AccessionNumber()"><B>AccessionNumber()</B></A> -
       Constructor for class edu.ucsb.nceas.metacat.<A HREF="edu/ucsb/nceas/metacat/AccessionNumber.html">AccessionNumber</A>
       <DD>&nbsp;
       <DT><A HREF="edu/ucsb/nceas/metacat/AccessionNumberException.html"><B>AccessionNumberException</B></A> - exception edu.ucsb.nceas.metacat.<A HREF="edu/ucsb/nceas/metacat/AccessionNumberException.html">AccessionNumberException</A>.<DD>Exception thrown when an error occurs because an AccessionNumber was
        invalid or used incorrectly.<DT><A HREF="edu/ucsb/nceas/metacat/AccessionNumberException.html#AccessionNumberException(java.lang.String)"><B>AccessionNumberException(String)</B></A> -
       Constructor for class edu.ucsb.nceas.metacat.<A HREF="edu/ucsb/nceas/metacat/AccessionNumberException.html">AccessionNumberException</A>
       <DD>Create a new AccessionNumberException.
       <DT><A HREF="edu/ucsb/nceas/metacat/AccessionNumberGeneratedException.html"><B>AccessionNumberGeneratedException</B></A> - exception edu.ucsb.nceas.metacat.<A HREF="edu/ucsb/nceas/metacat/AccessionNumberGeneratedException.html">AccessionNumberGeneratedException</A>.<DD>Exception thrown when a new accession number is generated
        either because none was provided or it was not unique.<DT><A HREF="edu/ucsb/nceas/metacat/AccessionNumberGeneratedException.html#AccessionNumberGeneratedException(java.lang.String)"><B>AccessionNumberGeneratedException(String)</B></A> -
       Constructor for class edu.ucsb.nceas.metacat.<A HREF="edu/ucsb/nceas/metacat/AccessionNumberGeneratedException.html">AccessionNumberGeneratedException</A>
       <DD>Create a new AccessionNumberGeneratedException.
       <DT><A HREF="edu/ucsb/nceas/metacat/BasicNode.html#addChildNode(edu.ucsb.nceas.metacat.BasicNode)"><B>addChildNode(BasicNode)</B></A> -
       Method in class edu.ucsb.nceas.metacat.<A HREF="edu/ucsb/nceas/metacat/BasicNode.html">BasicNode</A>
       <DD>Add a child node to this node
       <DT><A HREF="edu/ucsb/nceas/metacat/DBSAXHandler.html#atFirstElement()"><B>atFirstElement()</B></A> -
       Method in class edu.ucsb.nceas.metacat.<A HREF="edu/ucsb/nceas/metacat/DBSAXHandler.html">DBSAXHandler</A>
       <DD>get the document processing state
       <DT><A HREF="edu/ucsb/nceas/metacat/DBSAXHandler.html#attributeDecl(java.lang.String, java.lang.String, java.lang.String, java.lang.String, java.lang.String)"><B>attributeDecl(String, String, String, String, String)</B></A> -
       Method in class edu.ucsb.nceas.metacat.<A HREF="edu/ucsb/nceas/metacat/DBSAXHandler.html">DBSAXHandler</A>
       <DD>SAX Handler that receives notification of attribute declarations
       </DL>
       <HR>
       <A NAME="_B_"><!-- --></A><H2>
       <B>B</B></H2>
       <DL>
       <DT><A HREF="edu/ucsb/nceas/metacat/BasicNode.html"><B>BasicNode</B></A> - class edu.ucsb.nceas.metacat.<A HREF="edu/ucsb/nceas/metacat/BasicNode.html">BasicNode</A>.<DD>A Class that represents an XML node and its contents<DT><A HREF="edu/ucsb/nceas/metacat/BasicNode.html#BasicNode()"><B>BasicNode()</B></A> -
       Constructor for class edu.ucsb.nceas.metacat.<A HREF="edu/ucsb/nceas/metacat/BasicNode.html">BasicNode</A>
       <DD>Construct a Basic Node
       <DT><A HREF="edu/ucsb/nceas/metacat/BasicNode.html#BasicNode(long, java.lang.String, long, int)"><B>BasicNode(long, String, long, int)</B></A> -
       Constructor for class edu.ucsb.nceas.metacat.<A HREF="edu/ucsb/nceas/metacat/BasicNode.html">BasicNode</A>
       <DD>Construct a Basic Node
       <DT><A HREF="edu/ucsb/nceas/metacat/BasicNode.html#BasicNode(java.lang.String)"><B>BasicNode(String)</B></A> -
       Constructor for class edu.ucsb.nceas.metacat.<A HREF="edu/ucsb/nceas/metacat/BasicNode.html">BasicNode</A>
       <DD>Construct a Basic Node
       <DT><A HREF="edu/ucsb/nceas/metacat/BasicNode.html#BasicNode(java.lang.String, long, int)"><B>BasicNode(String, long, int)</B></A> -
       Constructor for class edu.ucsb.nceas.metacat.<A HREF="edu/ucsb/nceas/metacat/BasicNode.html">BasicNode</A>
       <DD>Construct a Basic Node
       </DL>
       <HR>
       <A NAME="_C_"><!-- --></A><H2>
       <B>C</B></H2>
       <DL>
       <DT><A HREF="edu/ucsb/nceas/metacat/DBSAXHandler.html#characters(char[], int, int)"><B>characters(char[], int, int)</B></A> -
       Method in class edu.ucsb.nceas.metacat.<A HREF="edu/ucsb/nceas/metacat/DBSAXHandler.html">DBSAXHandler</A>
       <DD>SAX Handler that is called for each XML text node
       <DT><A HREF="edu/ucsb/nceas/metacat/QuerySpecification.html#characters(char[], int, int)"><B>characters(char[], int, int)</B></A> -
       Method in class edu.ucsb.nceas.metacat.<A HREF="edu/ucsb/nceas/metacat/QuerySpecification.html">QuerySpecification</A>
       <DD>callback method used by the SAX Parser when the text sequences of an
        xml stream are detected.
       <DT><A HREF="edu/ucsb/nceas/metacat/DBSAXHandler.html#comment(char[], int, int)"><B>comment(char[], int, int)</B></A> -
       Method in class edu.ucsb.nceas.metacat.<A HREF="edu/ucsb/nceas/metacat/DBSAXHandler.html">DBSAXHandler</A>
       <DD>SAX Handler that receives notification of comments in the DTD
       <DT><A HREF="edu/ucsb/nceas/metacat/DBQuery.html#createQuery(java.lang.String)"><B>createQuery(String)</B></A> -
       Static method in class edu.ucsb.nceas.metacat.<A HREF="edu/ucsb/nceas/metacat/DBQuery.html">DBQuery</A>
       <DD>format a simple free-text value query as an XML document that conforms
        to the pathquery.dtd and is appropriate for submission to the DBQuery
        structured query engine
       <DT><A HREF="edu/ucsb/nceas/metacat/DBQuery.html#createQuery(java.lang.String, java.lang.String)"><B>createQuery(String, String)</B></A> -
       Static method in class edu.ucsb.nceas.metacat.<A HREF="edu/ucsb/nceas/metacat/DBQuery.html">DBQuery</A>
       <DD>format a simple free-text value query as an XML document that conforms
        to the pathquery.dtd and is appropriate for submission to the DBQuery
        structured query engine
       </DL>
       <HR>
       <A NAME="_D_"><!-- --></A><H2>
       <B>D</B></H2>
       <DL>
       <DT><A HREF="edu/ucsb/nceas/metacat/DBDTDHandler.html"><B>DBDTDHandler</B></A> - class edu.ucsb.nceas.metacat.<A HREF="edu/ucsb/nceas/metacat/DBDTDHandler.html">DBDTDHandler</A>.<DD>A database aware Class implementing DTDHandler interface for the SAX
        parser to call when processing the XML stream and intercepting notations
        and unparsed entities<DT><A HREF="edu/ucsb/nceas/metacat/DBDTDHandler.html#DBDTDHandler(java.sql.Connection)"><B>DBDTDHandler(Connection)</B></A> -
       Constructor for class edu.ucsb.nceas.metacat.<A HREF="edu/ucsb/nceas/metacat/DBDTDHandler.html">DBDTDHandler</A>
       <DD>Construct an instance of the DBDTDHandler clas
       <DT><A HREF="edu/ucsb/nceas/metacat/DBEntityResolver.html"><B>DBEntityResolver</B></A> - class edu.ucsb.nceas.metacat.<A HREF="edu/ucsb/nceas/metacat/DBEntityResolver.html">DBEntityResolver</A>.<DD>A database aware Class implementing EntityResolver interface for the SAX
        parser to call when processing the XML stream and intercepting any
        external entities (including the external DTD subset and external
        parameter entities, if any) before including them.<DT><A HREF="edu/ucsb/nceas/metacat/DBEntityResolver.html#DBEntityResolver(java.sql.Connection, edu.ucsb.nceas.metacat.DBSAXHandler)"><B>DBEntityResolver(Connection, DBSAXHandler)</B></A> -
       Constructor for class edu.ucsb.nceas.metacat.<A HREF="edu/ucsb/nceas/metacat/DBEntityResolver.html">DBEntityResolver</A>
       <DD>Construct an instance of the DBEntityResolver clas
       <DT><A HREF="edu/ucsb/nceas/metacat/DBQuery.html"><B>DBQuery</B></A> - class edu.ucsb.nceas.metacat.<A HREF="edu/ucsb/nceas/metacat/DBQuery.html">DBQuery</A>.<DD>A Class that searches a relational DB for elements and
        attributes that have free text matches a query string,
        or structured query matches to a path specified node in the
        XML hierarchy.<DT><A HREF="edu/ucsb/nceas/metacat/DBQuery.html#DBQuery(java.sql.Connection, java.lang.String)"><B>DBQuery(Connection, String)</B></A> -
       Constructor for class edu.ucsb.nceas.metacat.<A HREF="edu/ucsb/nceas/metacat/DBQuery.html">DBQuery</A>
       <DD>construct an instance of the DBQuery class
       <DT><A HREF="edu/ucsb/nceas/metacat/DBReader.html"><B>DBReader</B></A> - class edu.ucsb.nceas.metacat.<A HREF="edu/ucsb/nceas/metacat/DBReader.html">DBReader</A>.<DD>A Class that creates an XML text document
        from a query to a relational DB containing a DOM representation<DT><A HREF="edu/ucsb/nceas/metacat/DBReader.DoctypeInfo.html"><B>DBReader.DoctypeInfo</B></A> - class edu.ucsb.nceas.metacat.<A HREF="edu/ucsb/nceas/metacat/DBReader.DoctypeInfo.html">DBReader.DoctypeInfo</A>.<DD>A utility class that encapsulates document type information<DT><A HREF="edu/ucsb/nceas/metacat/DBReader.DoctypeInfo.html#DBReader.DoctypeInfo(edu.ucsb.nceas.metacat.DBReader, java.lang.String, java.lang.String, java.lang.String)"><B>DBReader.DoctypeInfo(DBReader, String, String, String)</B></A> -
       Constructor for class edu.ucsb.nceas.metacat.<A HREF="edu/ucsb/nceas/metacat/DBReader.DoctypeInfo.html">DBReader.DoctypeInfo</A>
       <DD>Constructor
       <DT><A HREF="edu/ucsb/nceas/metacat/DBReader.html#DBReader(java.sql.Connection)"><B>DBReader(Connection)</B></A> -
       Constructor for class edu.ucsb.nceas.metacat.<A HREF="edu/ucsb/nceas/metacat/DBReader.html">DBReader</A>
       <DD>construct a DBReader instance.
       <DT><A HREF="edu/ucsb/nceas/metacat/DBSAXDocument.html"><B>DBSAXDocument</B></A> - class edu.ucsb.nceas.metacat.<A HREF="edu/ucsb/nceas/metacat/DBSAXDocument.html">DBSAXDocument</A>.<DD>A Class that writes an XML document main data to a database connection<DT><A HREF="edu/ucsb/nceas/metacat/DBSAXDocument.html#DBSAXDocument(java.sql.Connection)"><B>DBSAXDocument(Connection)</B></A> -
       Constructor for class edu.ucsb.nceas.metacat.<A HREF="edu/ucsb/nceas/metacat/DBSAXDocument.html">DBSAXDocument</A>
       <DD>Construct a new document instance, used for deleting documents
       <DT><A HREF="edu/ucsb/nceas/metacat/DBSAXDocument.html#DBSAXDocument(java.sql.Connection, long, java.lang.String, java.lang.String, java.lang.String, java.lang.String)"><B>DBSAXDocument(Connection, long, String, String, String, String)</B></A> -
       Constructor for class edu.ucsb.nceas.metacat.<A HREF="edu/ucsb/nceas/metacat/DBSAXDocument.html">DBSAXDocument</A>
       <DD>Construct a new document instance
       <DT><A HREF="edu/ucsb/nceas/metacat/DBSAXHandler.html"><B>DBSAXHandler</B></A> - class edu.ucsb.nceas.metacat.<A HREF="edu/ucsb/nceas/metacat/DBSAXHandler.html">DBSAXHandler</A>.<DD>A database aware Class implementing callback bethods for the SAX parser to
        call when processing the XML stream and generating events<DT><A HREF="edu/ucsb/nceas/metacat/DBSAXHandler.html#DBSAXHandler(java.sql.Connection)"><B>DBSAXHandler(Connection)</B></A> -
       Constructor for class edu.ucsb.nceas.metacat.<A HREF="edu/ucsb/nceas/metacat/DBSAXHandler.html">DBSAXHandler</A>
       <DD>Construct an instance of the handler class
       <DT><A HREF="edu/ucsb/nceas/metacat/DBSAXHandler.html#DBSAXHandler(java.sql.Connection, java.lang.String, java.lang.String)"><B>DBSAXHandler(Connection, String, String)</B></A> -
       Constructor for class edu.ucsb.nceas.metacat.<A HREF="edu/ucsb/nceas/metacat/DBSAXHandler.html">DBSAXHandler</A>
       <DD>Construct an instance of the handler class
       <DT><A HREF="edu/ucsb/nceas/metacat/DBSAXNode.html"><B>DBSAXNode</B></A> - class edu.ucsb.nceas.metacat.<A HREF="edu/ucsb/nceas/metacat/DBSAXNode.html">DBSAXNode</A>.<DD>A Class that represents an XML node and its contents and
        can write its own representation to a database connection<DT><A HREF="edu/ucsb/nceas/metacat/DBSAXNode.html#DBSAXNode(java.sql.Connection, java.lang.String)"><B>DBSAXNode(Connection, String)</B></A> -
       Constructor for class edu.ucsb.nceas.metacat.<A HREF="edu/ucsb/nceas/metacat/DBSAXNode.html">DBSAXNode</A>
       <DD>Construct a new node instance for DOCUMENT nodes
       <DT><A HREF="edu/ucsb/nceas/metacat/DBSAXNode.html#DBSAXNode(java.sql.Connection, java.lang.String, edu.ucsb.nceas.metacat.DBSAXNode, edu.ucsb.nceas.metacat.DBSAXNode, edu.ucsb.nceas.metacat.DBSAXDocument)"><B>DBSAXNode(Connection, String, DBSAXNode, DBSAXNode, DBSAXDocument)</B></A> -
       Constructor for class edu.ucsb.nceas.metacat.<A HREF="edu/ucsb/nceas/metacat/DBSAXNode.html">DBSAXNode</A>
       <DD>Construct a new node instance for ELEMENT nodes
       <DT><A HREF="edu/ucsb/nceas/metacat/DBSimpleQuery.html"><B>DBSimpleQuery</B></A> - class edu.ucsb.nceas.metacat.<A HREF="edu/ucsb/nceas/metacat/DBSimpleQuery.html">DBSimpleQuery</A>.<DD>A Class that searches a relational DB for elements and attributes that
        have free text matches to the query string.<DT><A HREF="edu/ucsb/nceas/metacat/DBSimpleQuery.html#DBSimpleQuery(java.sql.Connection)"><B>DBSimpleQuery(Connection)</B></A> -
       Constructor for class edu.ucsb.nceas.metacat.<A HREF="edu/ucsb/nceas/metacat/DBSimpleQuery.html">DBSimpleQuery</A>
       <DD>construct an instance of the DBSimpleQuery class
       <DT><A HREF="edu/ucsb/nceas/metacat/DBTransform.html"><B>DBTransform</B></A> - class edu.ucsb.nceas.metacat.<A HREF="edu/ucsb/nceas/metacat/DBTransform.html">DBTransform</A>.<DD>A Class that transforms XML documents utitlizing XSL style sheets<DT><A HREF="edu/ucsb/nceas/metacat/DBTransform.html#DBTransform(java.sql.Connection)"><B>DBTransform(Connection)</B></A> -
       Constructor for class edu.ucsb.nceas.metacat.<A HREF="edu/ucsb/nceas/metacat/DBTransform.html">DBTransform</A>
       <DD>construct a DBTransform instance.
       <DT><A HREF="edu/ucsb/nceas/metacat/DBValidate.html"><B>DBValidate</B></A> - class edu.ucsb.nceas.metacat.<A HREF="edu/ucsb/nceas/metacat/DBValidate.html">DBValidate</A>.<DD>Name: DBValidate.java
              Purpose: A Class that validates XML documents
        			   This class is designed to be parser independent
           			   i.e.<DT><A HREF="edu/ucsb/nceas/metacat/DBValidate.html#DBValidate(java.lang.String)"><B>DBValidate(String)</B></A> -
       Constructor for class edu.ucsb.nceas.metacat.<A HREF="edu/ucsb/nceas/metacat/DBValidate.html">DBValidate</A>
       <DD>Construct a new validation object
       <DT><A HREF="edu/ucsb/nceas/metacat/DBValidate.html#DBValidate(java.lang.String, java.lang.String)"><B>DBValidate(String, String)</B></A> -
       Constructor for class edu.ucsb.nceas.metacat.<A HREF="edu/ucsb/nceas/metacat/DBValidate.html">DBValidate</A>
       <DD>Construct a new validation object
       <DT><A HREF="edu/ucsb/nceas/metacat/DBWriter.html"><B>DBWriter</B></A> - class edu.ucsb.nceas.metacat.<A HREF="edu/ucsb/nceas/metacat/DBWriter.html">DBWriter</A>.<DD>A Class that reads in an XML text document and
        write its contents to a database connection using SAX<DT><A HREF="edu/ucsb/nceas/metacat/DBWriter.html#DBWriter(java.sql.Connection, java.lang.String)"><B>DBWriter(Connection, String)</B></A> -
       Constructor for class edu.ucsb.nceas.metacat.<A HREF="edu/ucsb/nceas/metacat/DBWriter.html">DBWriter</A>
       <DD>construct a new instance of the class to write an XML file to the database
       <DT><A HREF="edu/ucsb/nceas/metacat/MetaCatUtil.html#debugMessage(int)"><B>debugMessage(int)</B></A> -
       Static method in class edu.ucsb.nceas.metacat.<A HREF="edu/ucsb/nceas/metacat/MetaCatUtil.html">MetaCatUtil</A>
       <DD>Utility method to print debugging messages
       <DT><A HREF="edu/ucsb/nceas/metacat/MetaCatUtil.html#debugMessage(java.lang.String)"><B>debugMessage(String)</B></A> -
       Static method in class edu.ucsb.nceas.metacat.<A HREF="edu/ucsb/nceas/metacat/MetaCatUtil.html">MetaCatUtil</A>
       <DD>Utility method to print debugging messages
       <DT><A HREF="edu/ucsb/nceas/metacat/DBWriter.html#delete(java.lang.String)"><B>delete(String)</B></A> -
       Method in class edu.ucsb.nceas.metacat.<A HREF="edu/ucsb/nceas/metacat/DBWriter.html">DBWriter</A>
       <DD>Delete an XML file from the database (actually, just make it a revision
        in the xml_revisions table)
       <DT><A HREF="edu/ucsb/nceas/metacat/MetaCatServlet.html#doGet(javax.servlet.http.HttpServletRequest, javax.servlet.http.HttpServletResponse)"><B>doGet(HttpServletRequest, HttpServletResponse)</B></A> -
       Method in class edu.ucsb.nceas.metacat.<A HREF="edu/ucsb/nceas/metacat/MetaCatServlet.html">MetaCatServlet</A>
       <DD>Handle "GET" method requests from HTTP clients
       <DT><A HREF="edu/ucsb/nceas/metacat/MetaCatServlet.html#doPost(javax.servlet.http.HttpServletRequest, javax.servlet.http.HttpServletResponse)"><B>doPost(HttpServletRequest, HttpServletResponse)</B></A> -
       Method in class edu.ucsb.nceas.metacat.<A HREF="edu/ucsb/nceas/metacat/MetaCatServlet.html">MetaCatServlet</A>
       <DD>Handle "POST" method requests from HTTP clients
       </DL>
       <HR>
       <A NAME="_E_"><!-- --></A><H2>
       <B>E</B></H2>
       <DL>
       <DT><A HREF="edu/ucsb/nceas/metacat/package-summary.html"><B>edu.ucsb.nceas.metacat</B></A> - package edu.ucsb.nceas.metacat<DD>&nbsp;<DT><A HREF="edu/ucsb/nceas/metacat/DBSAXHandler.html#elementDecl(java.lang.String, java.lang.String)"><B>elementDecl(String, String)</B></A> -
       Method in class edu.ucsb.nceas.metacat.<A HREF="edu/ucsb/nceas/metacat/DBSAXHandler.html">DBSAXHandler</A>
       <DD>SAX Handler that receives notification of element declarations
       <DT><A HREF="edu/ucsb/nceas/metacat/ElementNode.html"><B>ElementNode</B></A> - class edu.ucsb.nceas.metacat.<A HREF="edu/ucsb/nceas/metacat/ElementNode.html">ElementNode</A>.<DD>A Class that represents an XML element and its contents,
        and can build itself from a database connection<DT><A HREF="edu/ucsb/nceas/metacat/ElementNode.html#ElementNode(java.sql.Connection)"><B>ElementNode(Connection)</B></A> -
       Constructor for class edu.ucsb.nceas.metacat.<A HREF="edu/ucsb/nceas/metacat/ElementNode.html">ElementNode</A>
       <DD>Construct a new ElementNode instance
       <DT><A HREF="edu/ucsb/nceas/metacat/ElementNode.html#ElementNode(java.sql.Connection, long)"><B>ElementNode(Connection, long)</B></A> -
       Constructor for class edu.ucsb.nceas.metacat.<A HREF="edu/ucsb/nceas/metacat/ElementNode.html">ElementNode</A>
       <DD>Construct a new ElementNode instance
       <DT><A HREF="edu/ucsb/nceas/metacat/ElementNode.html#ElementNode(java.sql.Connection, long, long, java.lang.String, java.lang.String)"><B>ElementNode(Connection, long, long, String, String)</B></A> -
       Constructor for class edu.ucsb.nceas.metacat.<A HREF="edu/ucsb/nceas/metacat/ElementNode.html">ElementNode</A>
       <DD>Construct a new ElementNode instance
       <DT><A HREF="edu/ucsb/nceas/metacat/DBSAXHandler.html#endCDATA()"><B>endCDATA()</B></A> -
       Method in class edu.ucsb.nceas.metacat.<A HREF="edu/ucsb/nceas/metacat/DBSAXHandler.html">DBSAXHandler</A>
       <DD>SAX Handler that receives notification of the end of CDATA sections
       <DT><A HREF="edu/ucsb/nceas/metacat/DBSAXHandler.html#endDocument()"><B>endDocument()</B></A> -
       Method in class edu.ucsb.nceas.metacat.<A HREF="edu/ucsb/nceas/metacat/DBSAXHandler.html">DBSAXHandler</A>
       <DD>SAX Handler that receives notification of end of the document
       <DT><A HREF="edu/ucsb/nceas/metacat/DBSAXHandler.html#endDTD()"><B>endDTD()</B></A> -
       Method in class edu.ucsb.nceas.metacat.<A HREF="edu/ucsb/nceas/metacat/DBSAXHandler.html">DBSAXHandler</A>
       <DD>SAX Handler that receives notification of end of DTD
       <DT><A HREF="edu/ucsb/nceas/metacat/DBSAXHandler.html#endElement(java.lang.String, java.lang.String, java.lang.String)"><B>endElement(String, String, String)</B></A> -
       Method in class edu.ucsb.nceas.metacat.<A HREF="edu/ucsb/nceas/metacat/DBSAXHandler.html">DBSAXHandler</A>
       <DD>SAX Handler that is called at the end of each XML element
       <DT><A HREF="edu/ucsb/nceas/metacat/QuerySpecification.html#endElement(java.lang.String, java.lang.String, java.lang.String)"><B>endElement(String, String, String)</B></A> -
       Method in class edu.ucsb.nceas.metacat.<A HREF="edu/ucsb/nceas/metacat/QuerySpecification.html">QuerySpecification</A>
       <DD>callback method used by the SAX Parser when the end tag of an
        element is detected.
       <DT><A HREF="edu/ucsb/nceas/metacat/DBSAXHandler.html#endEntity(java.lang.String)"><B>endEntity(String)</B></A> -
       Method in class edu.ucsb.nceas.metacat.<A HREF="edu/ucsb/nceas/metacat/DBSAXHandler.html">DBSAXHandler</A>
       <DD>SAX Handler that receives notification of the end of entities
       <DT><A HREF="edu/ucsb/nceas/metacat/DBSAXHandler.html#error(org.xml.sax.SAXParseException)"><B>error(SAXParseException)</B></A> -
       Method in class edu.ucsb.nceas.metacat.<A HREF="edu/ucsb/nceas/metacat/DBSAXHandler.html">DBSAXHandler</A>
       <DD>SAX Handler that receives notification of recoverable parsing errors
       <DT><A HREF="edu/ucsb/nceas/metacat/DBSAXHandler.html#externalEntityDecl(java.lang.String, java.lang.String, java.lang.String)"><B>externalEntityDecl(String, String, String)</B></A> -
       Method in class edu.ucsb.nceas.metacat.<A HREF="edu/ucsb/nceas/metacat/DBSAXHandler.html">DBSAXHandler</A>
       <DD>SAX Handler that receives notification of external entity declarations
       </DL>
       <HR>
       <A NAME="_F_"><!-- --></A><H2>
       <B>F</B></H2>
       <DL>
       <DT><A HREF="edu/ucsb/nceas/metacat/DBSAXHandler.html#fatalError(org.xml.sax.SAXParseException)"><B>fatalError(SAXParseException)</B></A> -
       Method in class edu.ucsb.nceas.metacat.<A HREF="edu/ucsb/nceas/metacat/DBSAXHandler.html">DBSAXHandler</A>
       <DD>SAX Handler that receives notification of fatal parsing errors
       <DT><A HREF="edu/ucsb/nceas/metacat/MetaCatUtil.html#fileToURL(java.io.File)"><B>fileToURL(File)</B></A> -
       Static method in class edu.ucsb.nceas.metacat.<A HREF="edu/ucsb/nceas/metacat/MetaCatUtil.html">MetaCatUtil</A>
       <DD>Utility method to convert a file handle into a URL
       <DT><A HREF="edu/ucsb/nceas/metacat/DBQuery.html#findDocuments(java.io.Reader)"><B>findDocuments(Reader)</B></A> -
       Method in class edu.ucsb.nceas.metacat.<A HREF="edu/ucsb/nceas/metacat/DBQuery.html">DBQuery</A>
       <DD>routine to search the elements and attributes looking to match query
       <DT><A HREF="edu/ucsb/nceas/metacat/DBSimpleQuery.html#findDocuments(java.lang.String)"><B>findDocuments(String)</B></A> -
       Method in class edu.ucsb.nceas.metacat.<A HREF="edu/ucsb/nceas/metacat/DBSimpleQuery.html">DBSimpleQuery</A>
       <DD>routine to search the elements and attributes looking to match query
       <DT><A HREF="edu/ucsb/nceas/metacat/DBSimpleQuery.html#findDocuments(java.lang.String, java.lang.String)"><B>findDocuments(String, String)</B></A> -
       Method in class edu.ucsb.nceas.metacat.<A HREF="edu/ucsb/nceas/metacat/DBSimpleQuery.html">DBSimpleQuery</A>
       <DD>routine to search the elements and attributes looking to match query
       </DL>
       <HR>
       <A NAME="_G_"><!-- --></A><H2>
       <B>G</B></H2>
       <DL>
       <DT><A HREF="edu/ucsb/nceas/metacat/AccessionNumber.html#generate(java.lang.String, java.lang.String)"><B>generate(String, String)</B></A> -
       Static method in class edu.ucsb.nceas.metacat.<A HREF="edu/ucsb/nceas/metacat/AccessionNumber.html">AccessionNumber</A>
       <DD>Get an accession number from the user, check it for uniqueness
        and register it into new db connection.
       <DT><A HREF="edu/ucsb/nceas/metacat/BasicNode.html#getAttribute(java.lang.String)"><B>getAttribute(String)</B></A> -
       Method in class edu.ucsb.nceas.metacat.<A HREF="edu/ucsb/nceas/metacat/BasicNode.html">BasicNode</A>
       <DD>Get an attribute value by name
       <DT><A HREF="edu/ucsb/nceas/metacat/BasicNode.html#getAttributes()"><B>getAttributes()</B></A> -
       Method in class edu.ucsb.nceas.metacat.<A HREF="edu/ucsb/nceas/metacat/BasicNode.html">BasicNode</A>
       <DD>Get the attributes as a string
       <DT><A HREF="edu/ucsb/nceas/metacat/BasicNode.html#getChildren()"><B>getChildren()</B></A> -
       Method in class edu.ucsb.nceas.metacat.<A HREF="edu/ucsb/nceas/metacat/BasicNode.html">BasicNode</A>
       <DD>Get the an enumeration of the children of this node
       <DT><A HREF="edu/ucsb/nceas/metacat/BasicNode.html#getDocID()"><B>getDocID()</B></A> -
       Method in class edu.ucsb.nceas.metacat.<A HREF="edu/ucsb/nceas/metacat/BasicNode.html">BasicNode</A>
       <DD>Get the doc id of this node
       <DT><A HREF="edu/ucsb/nceas/metacat/DBSAXDocument.html#getDocID()"><B>getDocID()</B></A> -
       Method in class edu.ucsb.nceas.metacat.<A HREF="edu/ucsb/nceas/metacat/DBSAXDocument.html">DBSAXDocument</A>
       <DD>Get doc id
       <DT><A HREF="edu/ucsb/nceas/metacat/DBSAXHandler.html#getDocname()"><B>getDocname()</B></A> -
       Method in class edu.ucsb.nceas.metacat.<A HREF="edu/ucsb/nceas/metacat/DBSAXHandler.html">DBSAXHandler</A>
       <DD>get the document name
       <DT><A HREF="edu/ucsb/nceas/metacat/DBReader.DoctypeInfo.html#getDocname()"><B>getDocname()</B></A> -
       Method in class edu.ucsb.nceas.metacat.<A HREF="edu/ucsb/nceas/metacat/DBReader.DoctypeInfo.html">DBReader.DoctypeInfo</A>
       <DD>get the document name
       <DT><A HREF="edu/ucsb/nceas/metacat/DBReader.DoctypeInfo.html#getDoctype()"><B>getDoctype()</B></A> -
       Method in class edu.ucsb.nceas.metacat.<A HREF="edu/ucsb/nceas/metacat/DBReader.DoctypeInfo.html">DBReader.DoctypeInfo</A>
       <DD>get the document type
       <DT><A HREF="edu/ucsb/nceas/metacat/DBSAXDocument.html#getDoctype()"><B>getDoctype()</B></A> -
       Method in class edu.ucsb.nceas.metacat.<A HREF="edu/ucsb/nceas/metacat/DBSAXDocument.html">DBSAXDocument</A>
       <DD>Get doctype
       <DT><A HREF="edu/ucsb/nceas/metacat/DBReader.html#getDoctypeInfo(java.lang.String)"><B>getDoctypeInfo(String)</B></A> -
       Method in class edu.ucsb.nceas.metacat.<A HREF="edu/ucsb/nceas/metacat/DBReader.html">DBReader</A>
       <DD>Look up the document type information from the database
       <DT><A HREF="edu/ucsb/nceas/metacat/TextNode.html#getNodeData()"><B>getNodeData()</B></A> -
       Method in class edu.ucsb.nceas.metacat.<A HREF="edu/ucsb/nceas/metacat/TextNode.html">TextNode</A>
       <DD>Get the node data as a string value
       <DT><A HREF="edu/ucsb/nceas/metacat/BasicNode.html#getNodeID()"><B>getNodeID()</B></A> -
       Method in class edu.ucsb.nceas.metacat.<A HREF="edu/ucsb/nceas/metacat/BasicNode.html">BasicNode</A>
       <DD>Get the id of this node
       <DT><A HREF="edu/ucsb/nceas/metacat/BasicNode.html#getNodeIndex()"><B>getNodeIndex()</B></A> -
       Method in class edu.ucsb.nceas.metacat.<A HREF="edu/ucsb/nceas/metacat/BasicNode.html">BasicNode</A>
       <DD>Get nodeIndex of the node
       <DT><A HREF="edu/ucsb/nceas/metacat/BasicNode.html#getNodeType()"><B>getNodeType()</B></A> -
       Method in class edu.ucsb.nceas.metacat.<A HREF="edu/ucsb/nceas/metacat/BasicNode.html">BasicNode</A>
       <DD>Get the type of this node
       <DT><A HREF="edu/ucsb/nceas/metacat/MetaCatUtil.html#getOption(java.lang.String)"><B>getOption(String)</B></A> -
       Method in class edu.ucsb.nceas.metacat.<A HREF="edu/ucsb/nceas/metacat/MetaCatUtil.html">MetaCatUtil</A>
       <DD>Utility method to get an option value from the properties file
       <DT><A HREF="edu/ucsb/nceas/metacat/BasicNode.html#getParentID()"><B>getParentID()</B></A> -
       Method in class edu.ucsb.nceas.metacat.<A HREF="edu/ucsb/nceas/metacat/BasicNode.html">BasicNode</A>
       <DD>Get the parent id of this node
       <DT><A HREF="edu/ucsb/nceas/metacat/DBSAXNode.html#getParentNode()"><B>getParentNode()</B></A> -
       Method in class edu.ucsb.nceas.metacat.<A HREF="edu/ucsb/nceas/metacat/DBSAXNode.html">DBSAXNode</A>
       <DD>get the parent of this node
       <DT><A HREF="edu/ucsb/nceas/metacat/DBReader.html#getRootNode(java.lang.String)"><B>getRootNode(String)</B></A> -
       Method in class edu.ucsb.nceas.metacat.<A HREF="edu/ucsb/nceas/metacat/DBReader.html">DBReader</A>
       <DD>Get the root node id for an XML document given a document id
       <DT><A HREF="edu/ucsb/nceas/metacat/BasicNode.html#getRootNodeID()"><B>getRootNodeID()</B></A> -
       Method in class edu.ucsb.nceas.metacat.<A HREF="edu/ucsb/nceas/metacat/BasicNode.html">BasicNode</A>
       <DD>Get the root node id of this node
       <DT><A HREF="edu/ucsb/nceas/metacat/DBReader.DoctypeInfo.html#getSystemID()"><B>getSystemID()</B></A> -
       Method in class edu.ucsb.nceas.metacat.<A HREF="edu/ucsb/nceas/metacat/DBReader.DoctypeInfo.html">DBReader.DoctypeInfo</A>
       <DD>get the system identifier
       <DT><A HREF="edu/ucsb/nceas/metacat/DBTransform.html#getSystemId(java.lang.String, java.lang.String, java.lang.String)"><B>getSystemId(String, String, String)</B></A> -
       Method in class edu.ucsb.nceas.metacat.<A HREF="edu/ucsb/nceas/metacat/DBTransform.html">DBTransform</A>
       <DD>Lookup a stylesheet reference from the db catalog
       <DT><A HREF="edu/ucsb/nceas/metacat/BasicNode.html#getTagName()"><B>getTagName()</B></A> -
       Method in class edu.ucsb.nceas.metacat.<A HREF="edu/ucsb/nceas/metacat/BasicNode.html">BasicNode</A>
       <DD>Get the name of this node
       <DT><A HREF="edu/ucsb/nceas/metacat/DBSAXDocument.html#getTitle()"><B>getTitle()</B></A> -
       Method in class edu.ucsb.nceas.metacat.<A HREF="edu/ucsb/nceas/metacat/DBSAXDocument.html">DBSAXDocument</A>
       <DD>Get the document title
       </DL>
       <HR>
       <A NAME="_I_"><!-- --></A><H2>
       <B>I</B></H2>
       <DL>
       <DT><A HREF="edu/ucsb/nceas/metacat/DBSAXHandler.html#ignorableWhitespace(char[], int, int)"><B>ignorableWhitespace(char[], int, int)</B></A> -
       Method in class edu.ucsb.nceas.metacat.<A HREF="edu/ucsb/nceas/metacat/DBSAXHandler.html">DBSAXHandler</A>
       <DD>SAX Handler that is called for each XML text node that is Ignorable
        white space
       <DT><A HREF="edu/ucsb/nceas/metacat/BasicNode.html#incChildNum()"><B>incChildNum()</B></A> -
       Method in class edu.ucsb.nceas.metacat.<A HREF="edu/ucsb/nceas/metacat/BasicNode.html">BasicNode</A>
       <DD>increase childNum when new child for the node is created
       <DT><A HREF="edu/ucsb/nceas/metacat/MetaCatServlet.html#init(javax.servlet.ServletConfig)"><B>init(ServletConfig)</B></A> -
       Method in class edu.ucsb.nceas.metacat.<A HREF="edu/ucsb/nceas/metacat/MetaCatServlet.html">MetaCatServlet</A>
       <DD>Initialize the servlet by creating appropriate database connections
       <DT><A HREF="edu/ucsb/nceas/metacat/DBSAXHandler.html#internalEntityDecl(java.lang.String, java.lang.String)"><B>internalEntityDecl(String, String)</B></A> -
       Method in class edu.ucsb.nceas.metacat.<A HREF="edu/ucsb/nceas/metacat/DBSAXHandler.html">DBSAXHandler</A>
       <DD>SAX Handler that receives notification of internal entity declarations
       </DL>
       <HR>
       <A NAME="_M_"><!-- --></A><H2>
       <B>M</B></H2>
       <DL>
       <DT><A HREF="edu/ucsb/nceas/metacat/DBTransform.html#main(java.lang.String[])"><B>main(String[])</B></A> -
       Static method in class edu.ucsb.nceas.metacat.<A HREF="edu/ucsb/nceas/metacat/DBTransform.html">DBTransform</A>
       <DD>the main routine used to test the transform utility.
       <DT><A HREF="edu/ucsb/nceas/metacat/DBQuery.html#main(java.lang.String[])"><B>main(String[])</B></A> -
       Static method in class edu.ucsb.nceas.metacat.<A HREF="edu/ucsb/nceas/metacat/DBQuery.html">DBQuery</A>
       <DD>the main routine used to test the DBQuery utility.
       <DT><A HREF="edu/ucsb/nceas/metacat/DBValidate.html#main(java.lang.String[])"><B>main(String[])</B></A> -
       Static method in class edu.ucsb.nceas.metacat.<A HREF="edu/ucsb/nceas/metacat/DBValidate.html">DBValidate</A>
       <DD>main method for testing
       <DT><A HREF="edu/ucsb/nceas/metacat/DBWriter.html#main(java.lang.String[])"><B>main(String[])</B></A> -
       Static method in class edu.ucsb.nceas.metacat.<A HREF="edu/ucsb/nceas/metacat/DBWriter.html">DBWriter</A>
       <DD>the main routine used to test the DBWriter utility.
       <DT><A HREF="edu/ucsb/nceas/metacat/DBReader.html#main(java.lang.String[])"><B>main(String[])</B></A> -
       Static method in class edu.ucsb.nceas.metacat.<A HREF="edu/ucsb/nceas/metacat/DBReader.html">DBReader</A>
       <DD>main routine used for testing.
       <DT><A HREF="edu/ucsb/nceas/metacat/DBSimpleQuery.html#main(java.lang.String[])"><B>main(String[])</B></A> -
       Static method in class edu.ucsb.nceas.metacat.<A HREF="edu/ucsb/nceas/metacat/DBSimpleQuery.html">DBSimpleQuery</A>
       <DD>the main routine used to test the DBSimpleQuery utility.
       <DT><A HREF="edu/ucsb/nceas/metacat/QuerySpecification.html#main(java.lang.String[])"><B>main(String[])</B></A> -
       Static method in class edu.ucsb.nceas.metacat.<A HREF="edu/ucsb/nceas/metacat/QuerySpecification.html">QuerySpecification</A>
       <DD>Main routine for testing
       <DT><A HREF="edu/ucsb/nceas/metacat/MetaCatServlet.html"><B>MetaCatServlet</B></A> - class edu.ucsb.nceas.metacat.<A HREF="edu/ucsb/nceas/metacat/MetaCatServlet.html">MetaCatServlet</A>.<DD>A metadata catalog server implemented as a Java Servlet
        <DT><A HREF="edu/ucsb/nceas/metacat/MetaCatServlet.html#MetaCatServlet()"><B>MetaCatServlet()</B></A> -
       Constructor for class edu.ucsb.nceas.metacat.<A HREF="edu/ucsb/nceas/metacat/MetaCatServlet.html">MetaCatServlet</A>
       <DD>&nbsp;
       <DT><A HREF="edu/ucsb/nceas/metacat/MetaCatUtil.html"><B>MetaCatUtil</B></A> - class edu.ucsb.nceas.metacat.<A HREF="edu/ucsb/nceas/metacat/MetaCatUtil.html">MetaCatUtil</A>.<DD>A suite of utility classes for the metadata catalog server<DT><A HREF="edu/ucsb/nceas/metacat/MetaCatUtil.html#MetaCatUtil()"><B>MetaCatUtil()</B></A> -
       Constructor for class edu.ucsb.nceas.metacat.<A HREF="edu/ucsb/nceas/metacat/MetaCatUtil.html">MetaCatUtil</A>
       <DD>Construct an instance of the utility class
       </DL>
       <HR>
       <A NAME="_N_"><!-- --></A><H2>
       <B>N</B></H2>
       <DL>
       <DT><A HREF="edu/ucsb/nceas/metacat/DBDTDHandler.html#notationDecl(java.lang.String, java.lang.String, java.lang.String)"><B>notationDecl(String, String, String)</B></A> -
       Method in class edu.ucsb.nceas.metacat.<A HREF="edu/ucsb/nceas/metacat/DBDTDHandler.html">DBDTDHandler</A>
       <DD>Notation declarations are not signaled
       </DL>
       <HR>
       <A NAME="_O_"><!-- --></A><H2>
       <B>O</B></H2>
       <DL>
       <DT><A HREF="edu/ucsb/nceas/metacat/MetaCatUtil.html#openDBConnection()"><B>openDBConnection()</B></A> -
       Method in class edu.ucsb.nceas.metacat.<A HREF="edu/ucsb/nceas/metacat/MetaCatUtil.html">MetaCatUtil</A>
       <DD>Utility method to establish a JDBC database connection using connection
        info from the properties file
       <DT><A HREF="edu/ucsb/nceas/metacat/MetaCatUtil.html#openDBConnection(java.lang.String, java.lang.String, java.lang.String, java.lang.String)"><B>openDBConnection(String, String, String, String)</B></A> -
       Static method in class edu.ucsb.nceas.metacat.<A HREF="edu/ucsb/nceas/metacat/MetaCatUtil.html">MetaCatUtil</A>
       <DD>Utility method to establish a JDBC database connection
       </DL>
       <HR>
       <A NAME="_P_"><!-- --></A><H2>
       <B>P</B></H2>
       <DL>
       <DT><A HREF="edu/ucsb/nceas/metacat/QuerySpecification.html#printSQL()"><B>printSQL()</B></A> -
       Method in class edu.ucsb.nceas.metacat.<A HREF="edu/ucsb/nceas/metacat/QuerySpecification.html">QuerySpecification</A>
       <DD>create a SQL serialization of the query that this instance represents
       <DT><A HREF="edu/ucsb/nceas/metacat/DBSAXHandler.html#processingInstruction(java.lang.String, java.lang.String)"><B>processingInstruction(String, String)</B></A> -
       Method in class edu.ucsb.nceas.metacat.<A HREF="edu/ucsb/nceas/metacat/DBSAXHandler.html">DBSAXHandler</A>
       <DD>SAX Handler called once for each processing instruction found:
        node that PI may occur before or after the root element.
       </DL>
       <HR>
       <A NAME="_Q_"><!-- --></A><H2>
       <B>Q</B></H2>
       <DL>
       <DT><A HREF="edu/ucsb/nceas/metacat/QuerySpecification.html"><B>QuerySpecification</B></A> - class edu.ucsb.nceas.metacat.<A HREF="edu/ucsb/nceas/metacat/QuerySpecification.html">QuerySpecification</A>.<DD>A Class that represents a structured query, and can be
        constructed from an XML serialization conforming to @see pathquery.dtd.<DT><A HREF="edu/ucsb/nceas/metacat/QuerySpecification.html#QuerySpecification(java.io.Reader, java.lang.String)"><B>QuerySpecification(Reader, String)</B></A> -
       Constructor for class edu.ucsb.nceas.metacat.<A HREF="edu/ucsb/nceas/metacat/QuerySpecification.html">QuerySpecification</A>
       <DD>construct an instance of the QuerySpecification class
       <DT><A HREF="edu/ucsb/nceas/metacat/QuerySpecification.html#QuerySpecification(java.lang.String, java.lang.String)"><B>QuerySpecification(String, String)</B></A> -
       Constructor for class edu.ucsb.nceas.metacat.<A HREF="edu/ucsb/nceas/metacat/QuerySpecification.html">QuerySpecification</A>
       <DD>construct an instance of the QuerySpecification class
       </DL>
       <HR>
       <A NAME="_R_"><!-- --></A><H2>
       <B>R</B></H2>
       <DL>
       <DT><A HREF="edu/ucsb/nceas/metacat/DBReader.html#readXMLDocument(java.lang.String)"><B>readXMLDocument(String)</B></A> -
       Method in class edu.ucsb.nceas.metacat.<A HREF="edu/ucsb/nceas/metacat/DBReader.html">DBReader</A>
       <DD>Create an XML document from the database starting with the element
        having element_id nodeid
       <DT><A HREF="edu/ucsb/nceas/metacat/DBEntityResolver.html#resolveEntity(java.lang.String, java.lang.String)"><B>resolveEntity(String, String)</B></A> -
       Method in class edu.ucsb.nceas.metacat.<A HREF="edu/ucsb/nceas/metacat/DBEntityResolver.html">DBEntityResolver</A>
       <DD>The Parser call this method before opening any external entity
        except the top-level document entity (including the external DTD subset,
        external entities referenced within the DTD, and external entities
        referenced within the document element)
       <DT><A HREF="edu/ucsb/nceas/metacat/DBValidate.html#returnErrors()"><B>returnErrors()</B></A> -
       Method in class edu.ucsb.nceas.metacat.<A HREF="edu/ucsb/nceas/metacat/DBValidate.html">DBValidate</A>
       <DD>provide a list of errors fromthe validation process
       </DL>
       <HR>
       <A NAME="_S_"><!-- --></A><H2>
       <B>S</B></H2>
       <DL>
       <DT><A HREF="edu/ucsb/nceas/metacat/DBSAXDocument.html#saveDocument(java.lang.String)"><B>saveDocument(String)</B></A> -
       Method in class edu.ucsb.nceas.metacat.<A HREF="edu/ucsb/nceas/metacat/DBSAXDocument.html">DBSAXDocument</A>
       <DD>Save a document entry in the xml_revisions table
       <DT><A HREF="edu/ucsb/nceas/metacat/BasicNode.html#setAttribute(java.lang.String, java.lang.String)"><B>setAttribute(String, String)</B></A> -
       Method in class edu.ucsb.nceas.metacat.<A HREF="edu/ucsb/nceas/metacat/BasicNode.html">BasicNode</A>
       <DD>Add a new attribute to this node, or set its value
       <DT><A HREF="edu/ucsb/nceas/metacat/DBSAXNode.html#setAttribute(java.lang.String, java.lang.String)"><B>setAttribute(String, String)</B></A> -
       Method in class edu.ucsb.nceas.metacat.<A HREF="edu/ucsb/nceas/metacat/DBSAXNode.html">DBSAXNode</A>
       <DD>Add a new attribute to this node, or set its value
       <DT><A HREF="edu/ucsb/nceas/metacat/BasicNode.html#setDocID(java.lang.String)"><B>setDocID(String)</B></A> -
       Method in class edu.ucsb.nceas.metacat.<A HREF="edu/ucsb/nceas/metacat/BasicNode.html">BasicNode</A>
       <DD>Set the doc id of this node
       <DT><A HREF="edu/ucsb/nceas/metacat/TextNode.html#setNodeData(java.lang.String)"><B>setNodeData(String)</B></A> -
       Method in class edu.ucsb.nceas.metacat.<A HREF="edu/ucsb/nceas/metacat/TextNode.html">TextNode</A>
       <DD>Set the node data to the given string
       <DT><A HREF="edu/ucsb/nceas/metacat/BasicNode.html#setNodeID(long)"><B>setNodeID(long)</B></A> -
       Method in class edu.ucsb.nceas.metacat.<A HREF="edu/ucsb/nceas/metacat/BasicNode.html">BasicNode</A>
       <DD>Set the id of this node
       <DT><A HREF="edu/ucsb/nceas/metacat/BasicNode.html#setNodeIndex(int)"><B>setNodeIndex(int)</B></A> -
       Method in class edu.ucsb.nceas.metacat.<A HREF="edu/ucsb/nceas/metacat/BasicNode.html">BasicNode</A>
       <DD>Set the node index of this node
       <DT><A HREF="edu/ucsb/nceas/metacat/BasicNode.html#setNodeType(java.lang.String)"><B>setNodeType(String)</B></A> -
       Method in class edu.ucsb.nceas.metacat.<A HREF="edu/ucsb/nceas/metacat/BasicNode.html">BasicNode</A>
       <DD>Set the type of this node
       <DT><A HREF="edu/ucsb/nceas/metacat/BasicNode.html#setParentID(long)"><B>setParentID(long)</B></A> -
       Method in class edu.ucsb.nceas.metacat.<A HREF="edu/ucsb/nceas/metacat/BasicNode.html">BasicNode</A>
       <DD>Set the parent id of this node
       <DT><A HREF="edu/ucsb/nceas/metacat/BasicNode.html#setRootNodeID(long)"><B>setRootNodeID(long)</B></A> -
       Method in class edu.ucsb.nceas.metacat.<A HREF="edu/ucsb/nceas/metacat/BasicNode.html">BasicNode</A>
       <DD>Set the root node id of this node
       <DT><A HREF="edu/ucsb/nceas/metacat/BasicNode.html#setTagName(java.lang.String)"><B>setTagName(String)</B></A> -
       Method in class edu.ucsb.nceas.metacat.<A HREF="edu/ucsb/nceas/metacat/BasicNode.html">BasicNode</A>
       <DD>Set the name of this node
       <DT><A HREF="edu/ucsb/nceas/metacat/DBSAXDocument.html#setTitle(java.lang.String)"><B>setTitle(String)</B></A> -
       Method in class edu.ucsb.nceas.metacat.<A HREF="edu/ucsb/nceas/metacat/DBSAXDocument.html">DBSAXDocument</A>
       <DD>Set the document title
       <DT><A HREF="edu/ucsb/nceas/metacat/DBSAXDocument.html#setTitleFromChildElement()"><B>setTitleFromChildElement()</B></A> -
       Method in class edu.ucsb.nceas.metacat.<A HREF="edu/ucsb/nceas/metacat/DBSAXDocument.html">DBSAXDocument</A>
       <DD>Look up the title of the first child element named "title"
        and record it as the document title
       <DT><A HREF="edu/ucsb/nceas/metacat/DBSAXHandler.html#startCDATA()"><B>startCDATA()</B></A> -
       Method in class edu.ucsb.nceas.metacat.<A HREF="edu/ucsb/nceas/metacat/DBSAXHandler.html">DBSAXHandler</A>
       <DD>SAX Handler that receives notification of the start of CDATA sections
       <DT><A HREF="edu/ucsb/nceas/metacat/DBSAXHandler.html#startDocument()"><B>startDocument()</B></A> -
       Method in class edu.ucsb.nceas.metacat.<A HREF="edu/ucsb/nceas/metacat/DBSAXHandler.html">DBSAXHandler</A>
       <DD>SAX Handler that receives notification of beginning of the document
       <DT><A HREF="edu/ucsb/nceas/metacat/DBSAXHandler.html#startDTD(java.lang.String, java.lang.String, java.lang.String)"><B>startDTD(String, String, String)</B></A> -
       Method in class edu.ucsb.nceas.metacat.<A HREF="edu/ucsb/nceas/metacat/DBSAXHandler.html">DBSAXHandler</A>
       <DD>SAX Handler that receives notification of DOCTYPE.
       <DT><A HREF="edu/ucsb/nceas/metacat/DBSAXHandler.html#startElement(java.lang.String, java.lang.String, java.lang.String, org.xml.sax.Attributes)"><B>startElement(String, String, String, Attributes)</B></A> -
       Method in class edu.ucsb.nceas.metacat.<A HREF="edu/ucsb/nceas/metacat/DBSAXHandler.html">DBSAXHandler</A>
       <DD>SAX Handler that is called at the start of each XML element
       <DT><A HREF="edu/ucsb/nceas/metacat/QuerySpecification.html#startElement(java.lang.String, java.lang.String, java.lang.String, org.xml.sax.Attributes)"><B>startElement(String, String, String, Attributes)</B></A> -
       Method in class edu.ucsb.nceas.metacat.<A HREF="edu/ucsb/nceas/metacat/QuerySpecification.html">QuerySpecification</A>
       <DD>callback method used by the SAX Parser when the start tag of an
        element is detected.
       <DT><A HREF="edu/ucsb/nceas/metacat/DBSAXHandler.html#startEntity(java.lang.String)"><B>startEntity(String)</B></A> -
       Method in class edu.ucsb.nceas.metacat.<A HREF="edu/ucsb/nceas/metacat/DBSAXHandler.html">DBSAXHandler</A>
       <DD>SAX Handler that receives notification of the start of entities
       </DL>
       <HR>
       <A NAME="_T_"><!-- --></A><H2>
       <B>T</B></H2>
       <DL>
       <DT><A HREF="edu/ucsb/nceas/metacat/TextNode.html"><B>TextNode</B></A> - class edu.ucsb.nceas.metacat.<A HREF="edu/ucsb/nceas/metacat/TextNode.html">TextNode</A>.<DD>A Class that represents an XML Text node and its contents,<DT><A HREF="edu/ucsb/nceas/metacat/TextNode.html#TextNode(long, long, java.lang.String, java.lang.String)"><B>TextNode(long, long, String, String)</B></A> -
       Constructor for class edu.ucsb.nceas.metacat.<A HREF="edu/ucsb/nceas/metacat/TextNode.html">TextNode</A>
       <DD>Construct a new TextNode instance
       <DT><A HREF="edu/ucsb/nceas/metacat/TextNode.html#toString()"><B>toString()</B></A> -
       Method in class edu.ucsb.nceas.metacat.<A HREF="edu/ucsb/nceas/metacat/TextNode.html">TextNode</A>
       <DD>String representation of this text node
       <DT><A HREF="edu/ucsb/nceas/metacat/ElementNode.html#toString()"><B>toString()</B></A> -
       Method in class edu.ucsb.nceas.metacat.<A HREF="edu/ucsb/nceas/metacat/ElementNode.html">ElementNode</A>
       <DD>String representation for display purposes (recursively descends through
        children to create an XML subtree)
       <DT><A HREF="edu/ucsb/nceas/metacat/QuerySpecification.html#toString()"><B>toString()</B></A> -
       Method in class edu.ucsb.nceas.metacat.<A HREF="edu/ucsb/nceas/metacat/QuerySpecification.html">QuerySpecification</A>
       <DD>create a String description of the query that this instance represents.
       <DT><A HREF="edu/ucsb/nceas/metacat/DBTransform.html#transformXMLDocument(java.lang.String, java.lang.String, java.lang.String, java.io.PrintWriter)"><B>transformXMLDocument(String, String, String, PrintWriter)</B></A> -
       Method in class edu.ucsb.nceas.metacat.<A HREF="edu/ucsb/nceas/metacat/DBTransform.html">DBTransform</A>
       <DD>Transform an XML document using the stylesheet reference from the db
       </DL>
       <HR>
       <A NAME="_U_"><!-- --></A><H2>
       <B>U</B></H2>
       <DL>
       <DT><A HREF="edu/ucsb/nceas/metacat/DBDTDHandler.html#unparsedEntityDecl(java.lang.String, java.lang.String, java.lang.String, java.lang.String)"><B>unparsedEntityDecl(String, String, String, String)</B></A> -
       Method in class edu.ucsb.nceas.metacat.<A HREF="edu/ucsb/nceas/metacat/DBDTDHandler.html">DBDTDHandler</A>
       <DD>All are reported after startDocument and before first
        startElement event
       </DL>
       <HR>
       <A NAME="_V_"><!-- --></A><H2>
       <B>V</B></H2>
       <DL>
       <DT><A HREF="edu/ucsb/nceas/metacat/DBValidate.html#validate(java.lang.String)"><B>validate(String)</B></A> -
       Method in class edu.ucsb.nceas.metacat.<A HREF="edu/ucsb/nceas/metacat/DBValidate.html">DBValidate</A>
       <DD>validate an xml document against its DTD
       <DT><A HREF="edu/ucsb/nceas/metacat/DBValidate.html#validateString(java.lang.String)"><B>validateString(String)</B></A> -
       Method in class edu.ucsb.nceas.metacat.<A HREF="edu/ucsb/nceas/metacat/DBValidate.html">DBValidate</A>
       <DD>validate an xml document against its DTD
       </DL>
       <HR>
       <A NAME="_W_"><!-- --></A><H2>
       <B>W</B></H2>
       <DL>
       <DT><A HREF="edu/ucsb/nceas/metacat/DBSAXHandler.html#warning(org.xml.sax.SAXParseException)"><B>warning(SAXParseException)</B></A> -
       Method in class edu.ucsb.nceas.metacat.<A HREF="edu/ucsb/nceas/metacat/DBSAXHandler.html">DBSAXHandler</A>
       <DD>SAX Handler that receives notification of warnings
       <DT><A HREF="edu/ucsb/nceas/metacat/DBWriter.html#write(java.io.Reader, java.lang.String, java.lang.String)"><B>write(Reader, String, String)</B></A> -
       Method in class edu.ucsb.nceas.metacat.<A HREF="edu/ucsb/nceas/metacat/DBWriter.html">DBWriter</A>
       <DD>Insert XML stream to the database
       <DT><A HREF="edu/ucsb/nceas/metacat/DBWriter.html#write(java.lang.String, java.lang.String, java.lang.String)"><B>write(String, String, String)</B></A> -
       Method in class edu.ucsb.nceas.metacat.<A HREF="edu/ucsb/nceas/metacat/DBWriter.html">DBWriter</A>
       <DD>Insert an XML file to the database
       <DT><A HREF="edu/ucsb/nceas/metacat/DBSAXNode.html#writeChildNodeToDB(java.lang.String, java.lang.String, java.lang.String)"><B>writeChildNodeToDB(String, String, String)</B></A> -
       Method in class edu.ucsb.nceas.metacat.<A HREF="edu/ucsb/nceas/metacat/DBSAXNode.html">DBSAXNode</A>
       <DD>creates SQL code and inserts new node into DB connection
       <DT><A HREF="edu/ucsb/nceas/metacat/DBSAXNode.html#writeDocID(java.lang.String)"><B>writeDocID(String)</B></A> -
       Method in class edu.ucsb.nceas.metacat.<A HREF="edu/ucsb/nceas/metacat/DBSAXNode.html">DBSAXNode</A>
       <DD>creates SQL code to put doc ID for the document node and for
        comment/PI nodes under document node into DB connection
       <DT><A HREF="edu/ucsb/nceas/metacat/DBSAXNode.html#writeNodename(java.lang.String)"><B>writeNodename(String)</B></A> -
       Method in class edu.ucsb.nceas.metacat.<A HREF="edu/ucsb/nceas/metacat/DBSAXNode.html">DBSAXNode</A>
       <DD>creates SQL code to put nodename for the document node
        into DB connection
       <DT><A HREF="edu/ucsb/nceas/metacat/DBSAXNode.html#writeRootNodeID(long)"><B>writeRootNodeID(long)</B></A> -
       Method in class edu.ucsb.nceas.metacat.<A HREF="edu/ucsb/nceas/metacat/DBSAXNode.html">DBSAXNode</A>
       <DD>creates SQL code to put root node id for the document node
        into DB connection
       </DL>
       <HR>
       <A HREF="#_A_">A</A> <A HREF="#_B_">B</A> <A HREF="#_C_">C</A> <A HREF="#_D_">D</A> <A HREF="#_E_">E</A> <A HREF="#_F_">F</A> <A HREF="#_G_">G</A> <A HREF="#_I_">I</A> <A HREF="#_M_">M</A> <A HREF="#_N_">N</A> <A HREF="#_O_">O</A> <A HREF="#_P_">P</A> <A HREF="#_Q_">Q</A> <A HREF="#_R_">R</A> <A HREF="#_S_">S</A> <A HREF="#_T_">T</A> <A HREF="#_U_">U</A> <A HREF="#_V_">V</A> <A HREF="#_W_">W</A>
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