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<!--
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* harvester.html
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*
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* Authors: Duane Costa
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* Copyright: 2004 Regents of the University of California and the
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* National Center for Ecological Analysis and Synthesis,
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* and the University of New Mexico.
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* For Details: http://www.nceas.ucsb.edu/
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* Created: 2004 April 9
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* Version:
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* File Info: '$ '
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*
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*
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-->
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<HTML>
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<HEAD>
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<TITLE>Metacat Harvester</TITLE>
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<link rel="stylesheet" type="text/css" href="@docrooturl@default.css">
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</HEAD>
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<BODY>
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<table width="100%">
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<tr>
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<td class="tablehead" colspan="2">
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<p class="label">Metacat Harvester</p>
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</td>
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<td class="tablehead" colspan="2" align="right">
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<a href="./properties.html">Back</a> |
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<a href="./metacattour.html">Home</a> |
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<a href="./unimplem.html">Next</a>
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</td>
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</tr>
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</table>
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<h4>Introduction</h4>
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The Metacat Harvester (henceforth referred to as "Harvester") is a
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program that automates the retrieval of EML documents from one or more sites
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and their subsequent upload (insert or update) to Metacat. Harvester uses pull
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technology to retrieve and upload documents to Metacat on a regularly
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scheduled basis.
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<P>
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Although Harvester is included with a Metacat installation (beginning with
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Metacat version 1.4.0), it is an extention to Metacat's functionality
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that may be used optionally.
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</P>
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<h4>Definitions</h4>
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The following table defines a number of terms that are useful in discussing
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Harvester and its features.
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<br><br>
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<table border="1">
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<tr>
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<td><b>Term</b></td>
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<td><b>Definition</b></td>
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</tr>
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<tr>
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<td>Harvester</td>
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<td>The Harvester program, a Java application that is bundled with the
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Metacat distribution. When a user installs Metacat on a system,
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the Harvester program is automatically included in the
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installation.
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</td>
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</tr>
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<tr>
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<td>Harvester Administrator</td>
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<td>The individual who installs and manages Harvester. Typically, this
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would be the same individual who installs and manages Metacat at a
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given installation.
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</td>
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</tr>
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<tr>
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<td>Harvest Site</td>
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<td>A location from which Harvester can retrieve EML documents. A given
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Harvester can retrieve documents from any number of different
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Harvest Sites.
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</td>
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</tr>
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<tr>
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<td>Harvest</td>
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<td>The act (by Harvester) of visiting a Harvest Site, retrieving a
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number of EML documents, and inserting or updating the documents to
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Metacat.
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</td>
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</tr>
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<tr>
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<td><a name="HarvestList" >Harvest List</a></td>
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<td>An XML document that lists a set of EML documents to be harvested. The
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Harvest List must conform to an XML Schema,
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<a href="../../lib/harvester/harvestList.xsd">harvestList.xsd</a>.
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</td>
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</tr>
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<tr>
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<td>Site Contact</td>
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<td>The individual at a particular Harvest Site who registers with
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Harvester, composes a Harvest List, and periodically prepares
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the site's EML documents for retrieval and upload to Metacat.
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</td>
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</tr>
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<tr>
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<td>Harvest List URL</td>
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<td>A URL to the Harvest List, as specified by the Site Contact.
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Each Harvest Site corresponds to a Harvest List URL. Harvester
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uses the URL to locate and read a site's Harvest List.
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</td>
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</tr>
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<tr>
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<td>Document URL</td>
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<td>A URL to an EML document, as specified in the Harvest List.
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The Harvest List may contain any number of Document URLs. Each
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Document URL provides a locator to a document to be harvested.
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</td>
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</tr>
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<tr>
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<td>Harvester Registration Page</td>
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<td>A web page that provides a means for a Site Contact
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to register with Harvester to schedule regular harvests from the
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site. Registration involves logging in and then specifying various
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settings for the Harvest Site, such as the Harvest List URL, the
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harvest frequency, and the email address of the Site Contact.
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</td>
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</tr>
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</table>
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<h4>Managing Harvester</h4>
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Harvester is managed by the Harvester Administrator. Typically, the same
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individual who manages a Metacat server would also act as the Harvester
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Administrator. The responsibilities of the Harvester Administrator include:
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<ul>
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<li><a href="#Configuring Harvester">Configuring Harvester</a></li>
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<li><a href="#Running Harvester">Running Harvester</a></li>
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<li><a href="#Reviewing Harvester">Reviewing Harvester reports to
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the Harvester Administrator</a></li>
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</ul>
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<h5><a name="Configuring Harvester">Configuring Harvester</a></h5>
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<p>Harvester must be configured to interact with a working Metacat
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installation. Thus, a Metacat installation that has been properly
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configured and installed is a pre-requisite to running Harvester.
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Additionally, Harvester has a number of settable properties that
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control its behavior. All Harvester configuration information is managed
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in a single file,
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<a href=../../lib/metacat.properties>metacat.properties</a>,
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located at:
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<pre> METACAT_HOME/lib/metacat.properties</pre>
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where METACAT_HOME is the top-level directory that Metacat is
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installed in.
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</p>
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<p>Harvester properties are grouped together in
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<a href=../../lib/metacat.properties>metacat.properties</a>, beginning
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after the comment line:
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<pre><code> # Harvester properties</code></pre>
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</p>
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<p>The Harvester Administrator should edit
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<a href=../../lib/metacat.properties>metacat.properties</a>,
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setting appropriate values for the <code><b>harvesterAdministrator</b></code>
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property, the <code><b>smtpServer</b></code> property, and possibly other
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properties. The following table is a summary of each property and its function.
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</p>
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<table border="1">
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<tr>
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<td><b>Property</b></td>
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<td><b>Description</b></td>
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<td><b>Possible or default value</b></td>
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</tr>
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<tr>
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<td>connectToMetacat</td>
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<td>This property determines whether Harvester should connect to
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Metacat to upload documents. It should be set to <code>true</code>
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under most circumstances. Setting this property to <code>false</code>
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can be useful for testing whether Harvester is able to retrieve
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documents from a site without actually connecting to Metacat to
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upload the documents.</td>
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<td><code>true</code> | <code>false</code><br>
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Default: <code>true</code>
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</tr>
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<tr>
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<td>delay</td>
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<td>The number of hours that Harvester will wait before beginning its
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first harvest. For example, if Harvester is run at 1:00 p.m., and
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the delay is set to 12, Harvester will begin its first harvest at
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1:00 a.m.</td>
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<td>Default: 0</td>
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</tr>
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<tr>
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<td>harvesterAdministrator</td>
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<td>The email address of the Harvester Administrator. Harvester will
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send email reports to this address after every harvest. You may
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enter multiple email addresses by separating each address with
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a comma or semicolon, for example, "name1@abc.edu,name2@abc.edu".
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</td>
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<td>An email address, or multiple email addresses separated by commas
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or semi-colons</td>
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<tr>
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<td>logPeriod</td>
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<td>The number of days that Harvester should retain log entries of harvest
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operations in the database. Harvester log entries record information
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such as which documents were harvested, from which sites, and
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whether any errors were encountered during the harvest. Log entries
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older than <code>logPeriod</code> number of days are purged from the
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database at the end of each harvest.</td>
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<td>Default: 90</td>
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</tr>
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<tr>
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<td>maxHarvests</td>
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<td>The maximum number of harvests that Harvester should execute before
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shutting down. When the Harvester program is executed, it will
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continue running until it has executed <code>maxHarvests</code>
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number of harvests and then the program will terminate. If
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the value of <code>maxHarvests</code> is set to 0 or a negative
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number, it will be ignored and Harvester will execute indefinitely.
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</td>
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<td>Default: 0</td>
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<tr>
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<td>period</td>
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<td>The number of hours between harvests. Harvester will run a new
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harvest every <code>period</code> number of hours, until the
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<code>maxHarvests</code> number of harvests have been run, or
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indefinitely if <code>maxHarvests</code> is set to a value of
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0 or a negative number.
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<td>Default: 24</td>
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</tr>
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<tr>
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<td>smtpServer</td>
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<td>The SMTP server that Harvester uses for sending email messages
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to the Harvester Administrator and to Site Contacts.</td>
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<td>A host name, for example: <code>somehost.institution.edu</code>
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<br><br>
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Default: <code>localhost</code>
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<br><br>
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Note that the default value will only work if the Harvester
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host machine has been configured as a SMTP server.
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</td>
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</tr>
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<tr>
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<td>Harvester Operation Properties (GetDocError, GetDocSuccess, etc.)</td>
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<td>This group of properties is used by Harvester to report information
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about the operations it performs for inclusion in log
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entries and email messages. Under most circumstances the values
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of these properties should not be modified.</td>
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<td> </td>
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</tr>
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</table>
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<br>
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<h5><a name="Running Harvester">Running Harvester</a></h5>
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After Harvester has been appropriately
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<a href="#Configuring Harvester">configured</a>,
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it can be run in either of two ways: (A) in a command window, or, (B)
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as a servlet. If you wish only to test that Harvester is functioning,
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or if you expect to use Harvester infrequently, it may desirable to run it from a
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command window. However, under most circumstances you will want Harvester to
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run continuously as a background servlet process. This eliminates the
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need to keep a command window continuously open while Harvester is running.
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Both of these procedures are described below.
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<ul>
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<li> (A) Running Harvester in a Command Window
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<ol>
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<li>Open a system command window or terminal window.</li>
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<li>Set the METACAT_HOME environment variable to the value of the Metacat
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installation directory. Some examples follow:
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<ul>
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<li>On Windows:
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<pre>set METACAT_HOME=C:\somePath\metacat</pre></li>
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<li>On Linux/Unix (bash shell):
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<pre>export METACAT_HOME=/home/somePath/metacat</pre></li>
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</ul>
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<li>cd to the following directory:
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<ul>
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<li>On Windows:
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<pre>cd %METACAT_HOME%\lib\harvester</pre></li>
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<li>On Linux/Unix:
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<pre>cd $METACAT_HOME/lib/harvester</pre></li>
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</ul>
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<li>Run the appropriate Harvester shell script, as determined by the
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operating system:
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<ul>
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<li>On Windows:
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<pre>runHarvester.bat</pre></li>
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<li>On Linux/Unix:
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<pre>sh runHarvester.sh</pre></li>
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</ul>
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</li>
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</ol>
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<p>The Harvester application will start executing. It will begin its first
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harvest after <code><b>delay</b></code> number of hours (as specified in the
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<a href=../../lib/metacat.properties>metacat.properties</a>
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file). The application will continue running a new harvest every
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<code><b>period</b></code> number of hours until a <code><b>maxHarvests</b></code>
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number of harvests have been completed (if <code><b>maxHarvests</b></code> is set
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to a value greater than 0), or until you interrupt the process by hitting CTRL/C
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in the command window.
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</p>
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</li>
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<li> (B) Running Harvester as a Servlet
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<ol>
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<li>Edit the file in your Metcat installation, <code>lib/web.xml.<em>tomcatN</em></code>, where <em>tomcatN</em> corresponds to the
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version of Tomcat you are running. For example, if you are running Tomcat 5,
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edit file <code>lib/web.xml.tomcat5</code>.</li>
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<li>Remove the comment symbols around the HarvesterServlet entry, so that:
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<pre><code>
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<!--
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<servlet>
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<servlet-name>HarvesterServlet</servlet-name>
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<servlet-class>edu.ucsb.nceas.metacat.harvesterClient.HarvesterServlet</servlet-class>
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<init-param>
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<param-name>debug</param-name>
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<param-value>1</param-value>
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</init-param>
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<init-param>
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<param-name>listings</param-name>
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<param-value>true</param-value>
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</init-param>
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<load-on-startup>1</load-on-startup>
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</servlet>
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-->
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</code></pre>
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is changed to:
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<pre><code>
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<servlet>
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<servlet-name>HarvesterServlet</servlet-name>
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<servlet-class>edu.ucsb.nceas.metacat.harvesterClient.HarvesterServlet</servlet-class>
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<init-param>
|
319 |
|
|
<param-name>debug</param-name>
|
320 |
|
|
<param-value>1</param-value>
|
321 |
|
|
</init-param>
|
322 |
|
|
<init-param>
|
323 |
|
|
<param-name>listings</param-name>
|
324 |
|
|
<param-value>true</param-value>
|
325 |
|
|
</init-param>
|
326 |
|
|
<load-on-startup>1</load-on-startup>
|
327 |
|
|
</servlet>
|
328 |
|
|
</code></pre>
|
329 |
|
|
Save the edited file.
|
330 |
|
|
</li>
|
331 |
|
|
<li>Shutdown Tomcat.</li>
|
332 |
|
|
<li>Redeploy Metacat by running the following two ant commands from the top-level
|
333 |
|
|
directory of your Metacat installation:
|
334 |
|
|
<code><pre>
|
335 |
|
|
ant cleanweb
|
336 |
|
|
ant install</code></pre>
|
337 |
|
|
</li>
|
338 |
|
|
<li>Restart Tomcat.</li>
|
339 |
|
|
</ol>
|
340 |
|
|
<p>About thirty seconds after you restart Tomcat, the Harvester servlet will
|
341 |
|
|
start executing. It will begin its first
|
342 |
|
|
harvest after <code><b>delay</b></code> number of hours (as specified in the
|
343 |
|
|
<a href=../../lib/metacat.properties>metacat.properties</a>
|
344 |
|
|
file). The servlet will continue running a new harvest every
|
345 |
|
|
<code><b>period</b></code> number of hours until a <code><b>maxHarvests</b></code>
|
346 |
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|
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|
number of harvests have been completed (if <code><b>maxHarvests</b></code> is set
|
347 |
|
|
to a value greater than 0), or until Tomcat shuts down.
|
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|
</p>
|
349 |
|
|
</li>
|
350 |
|
|
<h5><a name="Reviewing Harvester">
|
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|
Reviewing Harvester Reports to the Harvester Administrator</a></h5>
|
352 |
|
|
<P>
|
353 |
|
|
After every harvest, Harvester will send an email report to the Harvester
|
354 |
|
|
Administrator detailing the operations that were performed during the
|
355 |
|
|
harvest. The report will contain information about each of the Harvest Sites
|
356 |
|
|
that were harvested from, such as which EML documents were
|
357 |
|
|
harvested and whether any errors were encountered.
|
358 |
|
|
</P>
|
359 |
|
|
<p>
|
360 |
|
|
The harvest report will contain a list of log entries, where each log entry
|
361 |
|
|
describes an operation that was performed by Harvester. Log entries that
|
362 |
|
|
show a status value of 1 indicate that an error occurred during the
|
363 |
|
|
operation, while those that show a status value of 0 indicate that the
|
364 |
|
|
operation was completed successfully.
|
365 |
|
|
</p>
|
366 |
|
|
<P>The Harvester Administrator should review the report, paying particularly
|
367 |
|
|
close attention to any errors that are reported and to the accompanying error
|
368 |
|
|
messages that are displayed. When errors are reported at
|
369 |
|
|
a particular site, the Harvester Administrator should contact the Site
|
370 |
|
|
Contact to determine the source of the error and its resolution. See
|
371 |
|
|
<a href=#Reviewing>Reviewing Harvester Reports to the Site Contact</a> for a
|
372 |
|
|
description of common sources of errors at a Harvest Site.
|
373 |
|
|
</P>
|
374 |
|
|
<p>Errors that are independent of a particular site may indicate a problem
|
375 |
|
|
with Harvester itself, Metacat, or the database connection. Refer to the
|
376 |
|
|
error message to determine the source of the error and its resolution.
|
377 |
|
|
</p>
|
378 |
|
|
<h4>Managing a Harvest Site</h4>
|
379 |
|
|
A Harvest Site is managed by a Site Contact.
|
380 |
|
|
The responsibilities of a Site Contact fall into the following categories:
|
381 |
|
|
<ul>
|
382 |
|
|
<li><a href=#Registering>Registering with Harvester</a></li>
|
383 |
|
|
<li><a href=#Composing>Composing a Harvest List</a></li>
|
384 |
|
|
<li><a href=#Preparing>Preparing EML Documents for harvest</a></li>
|
385 |
|
|
<li><a href=#Reviewing>Reviewing Harvester reports to the Site Contact</a></li>
|
386 |
|
|
</ul>
|
387 |
|
|
<h5><a name="Registering">Registering with Harvester</a></h5>
|
388 |
|
|
<p>
|
389 |
|
|
A Site Contact registers a site with Harvester by logging in to the
|
390 |
|
|
Harvester Registration page and entering several items of information
|
391 |
|
|
that Harvester needs to know about the site.
|
392 |
|
|
</p>
|
393 |
|
|
<ol>
|
394 |
|
|
<li>Logging in to the Harvester Registration Page
|
395 |
|
|
<p>
|
396 |
|
|
The Harvester Registration page is accessed from Metacat. For example, if
|
397 |
|
|
the Metacat server that you wish to register with resides at the following
|
398 |
|
|
URL:
|
399 |
|
|
<pre> http://somehost.somelocation.edu:8080/knb/index.jsp</pre>
|
400 |
|
|
then the Harvester Registration page would be accessed at:
|
401 |
2157
|
costa
|
<pre> http://somehost.somelocation.edu:8080/knb/style/skins/knb/harvesterRegistrationLogin.html</pre>
|
402 |
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|
costa
|
</p>
|
403 |
|
|
<p>
|
404 |
|
|
After bringing up this page in your browser, login to your Metacat account
|
405 |
2166
|
costa
|
by entering your username, organization, and password. For example:
|
406 |
|
|
<table bgcolor="#ffffff" border="0" cellpadding="2" width='100%' >
|
407 |
|
|
<tr >
|
408 |
|
|
<td colspan=3 align=center > </td>
|
409 |
|
|
</tr>
|
410 |
|
|
<tr >
|
411 |
|
|
<td colspan=3 align=center >
|
412 |
|
|
<font face=verdana size=1%>
|
413 |
|
|
<b>Please Enter Username, Organization, and Password </b>
|
414 |
|
|
</font>
|
415 |
|
|
</td>
|
416 |
|
|
</tr>
|
417 |
|
|
<tr>
|
418 |
|
|
<td width='10%'> </td>
|
419 |
|
|
<td width="25%" bgcolor="#4682b4">
|
420 |
|
|
<p align="center">
|
421 |
|
|
<font color="white" face=verdana size=2%>
|
422 |
|
|
<b>Username</b>
|
423 |
|
|
</font>
|
424 |
|
|
</td>
|
425 |
|
|
<td><p><input type="text" name="uid" value="jdoe" maxlength="100" size="28"></td>
|
426 |
|
|
</tr>
|
427 |
|
|
<tr>
|
428 |
|
|
<td width='10%'> </td>
|
429 |
|
|
<td width="25%" bgcolor="#4682b4">
|
430 |
|
|
<p align="center">
|
431 |
|
|
<font color="white" face=verdana size=2%>
|
432 |
|
|
<b>Organization</b>
|
433 |
|
|
</font>
|
434 |
|
|
</td>
|
435 |
|
|
<td>
|
436 |
|
|
<input type="radio" name="o" value="NCEAS" checked>NCEAS
|
437 |
|
|
<input type="radio" name="o" value="LTER">LTER
|
438 |
|
|
<input type="radio" name="o" value="NRS">NRS
|
439 |
|
|
<br>
|
440 |
|
|
<input type="radio" name="o" value="PISCO">PISCO
|
441 |
|
|
<input type="radio" name="o" value="OBFS">OBFS
|
442 |
|
|
<input type="radio" name="o" value="Unaffiliated">Unaffiliated
|
443 |
|
|
</tr>
|
444 |
|
|
<tr>
|
445 |
|
|
<td width='10%'> </td>
|
446 |
|
|
<td bgcolor="#4682b4">
|
447 |
|
|
<p align="center">
|
448 |
|
|
<font color="white" face=verdana size=2%>
|
449 |
|
|
<b>Password</b>
|
450 |
|
|
</font>
|
451 |
|
|
</td>
|
452 |
|
|
<td><p><input type="password" name="passwd" value="*******" maxlength="60" size="28">
|
453 |
|
|
</td>
|
454 |
|
|
</tr>
|
455 |
|
|
<tr>
|
456 |
|
|
<td colspan=3 align=center > </td>
|
457 |
|
|
</tr>
|
458 |
|
|
</table>
|
459 |
2131
|
costa
|
In some cases, a Site Contact may need to login to an anonymous account
|
460 |
|
|
rather than his or her personal account. For example, a LTER Information
|
461 |
|
|
Manager may need to login to a dedicated account, named with a three-letter
|
462 |
2166
|
costa
|
acronym, that has been set up for the LTER site. The username
|
463 |
|
|
"GCE" would be used by the LTER Information Mangager at the GCE (Georgia
|
464 |
|
|
Coastal Ecosystems) site.
|
465 |
2131
|
costa
|
</p>
|
466 |
|
|
</li>
|
467 |
|
|
<li>Registering with Harvester
|
468 |
|
|
<p>
|
469 |
|
|
After logging in, you will be presented with a web form that prompts you
|
470 |
|
|
to enter information about your site and how often you want to schedule
|
471 |
|
|
harvests at your site. For example:
|
472 |
2185
|
costa
|
<table bgcolor="#ffffff" border="0" cellpadding="2" width='100%' >
|
473 |
|
|
<tr >
|
474 |
|
|
<td colspan=3 align=center > </td>
|
475 |
|
|
</tr>
|
476 |
|
|
<tr >
|
477 |
|
|
<td colspan=3 align=center >
|
478 |
|
|
<font face=verdana size=1%>
|
479 |
|
|
<b>Metacat Harvester Registration </b>
|
480 |
|
|
</font>
|
481 |
|
|
</td>
|
482 |
|
|
</tr>
|
483 |
|
|
<tr>
|
484 |
|
|
<td width='10%'> </td>
|
485 |
|
|
<td width="25%" bgcolor="#4682b4">
|
486 |
|
|
<p align="center">
|
487 |
|
|
<font color="white" face=verdana size=2%>
|
488 |
|
|
<b>Email address:</b>
|
489 |
|
|
</font>
|
490 |
|
|
</td>
|
491 |
|
|
<td><p><input type="text" size="55" name="uid" value="myname@institution.edu" maxlength="100" size="28"></td>
|
492 |
|
|
</tr>
|
493 |
|
|
<tr>
|
494 |
|
|
<td width='10%'> </td>
|
495 |
|
|
<td bgcolor="#4682b4">
|
496 |
|
|
<p align="center">
|
497 |
|
|
<font color="white" face=verdana size=2%>
|
498 |
|
|
<b>Harvest List URL:</b>
|
499 |
|
|
</font>
|
500 |
|
|
</td>
|
501 |
|
|
<td><p><input type="text" size="55" name="passwd" value="http://somehost.institution.edu/~myname/harvestList.xml" maxlength="60" size="28">
|
502 |
|
|
</td>
|
503 |
|
|
</tr>
|
504 |
|
|
<tr>
|
505 |
|
|
<td colspan=3 align=center > </td>
|
506 |
|
|
</tr>
|
507 |
|
|
<tr>
|
508 |
|
|
<td width='10%'> </td>
|
509 |
|
|
<td bgcolor="#4682b4">
|
510 |
|
|
<p align="center">
|
511 |
|
|
<font color="white" face=verdana size=2%>
|
512 |
|
|
<b>Harvest Frequency (1-99):</b>
|
513 |
|
|
</font>
|
514 |
|
|
</td>
|
515 |
|
|
<td><p><input type="text" size="3" name="passwd" value="2" maxlength="60" size="28">
|
516 |
|
|
</td>
|
517 |
|
|
</tr>
|
518 |
|
|
<tr>
|
519 |
|
|
<td colspan=3 align=center > </td>
|
520 |
|
|
</tr>
|
521 |
|
|
<tr>
|
522 |
|
|
<td width='10%'> </td>
|
523 |
|
|
<td width="25%" bgcolor="#4682b4">
|
524 |
|
|
<p align="center">
|
525 |
|
|
<font color="white" face=verdana size=2%>
|
526 |
|
|
<b>Unit:</b>
|
527 |
|
|
</font>
|
528 |
|
|
</td>
|
529 |
|
|
<td>
|
530 |
|
|
<input type="radio" name="o" value="days" >day(s)
|
531 |
|
|
<input type="radio" name="o" value="weeks" checked>week(s)
|
532 |
|
|
<input type="radio" name="o" value="months">month(s)
|
533 |
|
|
</tr>
|
534 |
|
|
</table>
|
535 |
|
|
<p>
|
536 |
2131
|
costa
|
After values have been entered for each of these fields, click the Register
|
537 |
|
|
button to register your site with Harvester.
|
538 |
|
|
</p>
|
539 |
|
|
<P>
|
540 |
|
|
In the example shown above, Harvester will attempt to harvest documents from
|
541 |
|
|
the site once every 2 weeks, it will access the site's Harvest List at URL
|
542 |
|
|
"http://somehost.institution.edu/~myname/harvestList.xml", and it will send
|
543 |
|
|
email reports to the Site Contact at email address "myname@institution.edu".
|
544 |
|
|
</P>
|
545 |
2330
|
costa
|
<P>
|
546 |
|
|
Note that you may enter multiple email addresses by separating each
|
547 |
|
|
address with a comma or a semi-colon. For example,
|
548 |
|
|
"myname@institution.edu,anothername@institution.edu".
|
549 |
|
|
</P>
|
550 |
2131
|
costa
|
</li>
|
551 |
|
|
<li>Unregistering with Harvester
|
552 |
|
|
<p>
|
553 |
|
|
At any time after you have registered with Harvester, you may discontinue
|
554 |
|
|
harvests at your site by unregistering. Simply login as described above and
|
555 |
|
|
then click the Unregister button. After doing so, Harvester will discontinue
|
556 |
|
|
harvests at the site.
|
557 |
|
|
</p>
|
558 |
|
|
</li>
|
559 |
|
|
</ol>
|
560 |
|
|
<h5><a name="Composing">Composing a Harvest List</a></h5>
|
561 |
|
|
<p>
|
562 |
|
|
A Harvest List is an XML file that holds a list of EML documents to be
|
563 |
|
|
harvested. For each EML document in the list, the following information
|
564 |
|
|
must be specified:
|
565 |
|
|
<ul>
|
566 |
|
|
<li><code>docid</code>, which consists of the:
|
567 |
|
|
<ul>
|
568 |
|
|
<li><code>scope</code>, e.g. "demoDocument". The scope is an identifier
|
569 |
|
|
that indicates which group of documents this document belongs to.
|
570 |
|
|
</li>
|
571 |
|
|
<li><code>identifier</code>, e.g. "1". The identifier is a number that
|
572 |
|
|
uniquely identifies this document within the scope.
|
573 |
|
|
</li>
|
574 |
|
|
<li><code>revision</code>, e.g. "5". The revision is a number that
|
575 |
|
|
indicates the current revision of this document.
|
576 |
|
|
</li>
|
577 |
|
|
</ul>
|
578 |
|
|
</li>
|
579 |
|
|
<li><code>documentType</code>, e.g. "eml://ecoinformatics.org/eml-2.0.0".
|
580 |
|
|
The documentType identifies the document as an EML document.</li>
|
581 |
|
|
<li><code>documentURL</code>, e.g. "http://www.lternet.edu/~dcosta/document1.xml".
|
582 |
|
|
The documentURL specifies a place where Harvester can locate
|
583 |
|
|
and retrieve the document via HTTP.</li>
|
584 |
|
|
</ul>
|
585 |
|
|
</p>
|
586 |
|
|
<p>
|
587 |
|
|
The contents of a Harvest List XML file must conform to a particular
|
588 |
|
|
XML Schema, as defined in file <a href="../../lib/harvester/harvestList.xsd">
|
589 |
|
|
harvestList.xsd</a>. The contents of a valid Harvest List
|
590 |
|
|
can best be illustrated by example. The sample Harvest List
|
591 |
|
|
below contains two <<code>document</code>> elements that specify the
|
592 |
|
|
information that Harvester needs to retrieve a pair of EML documents and
|
593 |
|
|
upload them to Metacat:
|
594 |
|
|
<pre>
|
595 |
|
|
<?xml version="1.0" encoding="UTF-8" ?>
|
596 |
|
|
<hrv:harvestList xmlns:hrv="eml://ecoinformatics.org/harvestList" >
|
597 |
|
|
<document>
|
598 |
|
|
<docid>
|
599 |
|
|
<scope>demoDocument</scope>
|
600 |
|
|
<identifier>1</identifier>
|
601 |
|
|
<revision>5</revision>
|
602 |
|
|
</docid>
|
603 |
|
|
<documentType>eml://ecoinformatics.org/eml-2.0.0</documentType>
|
604 |
|
|
<documentURL>http://www.lternet.edu/~dcosta/document1.xml</documentURL>
|
605 |
|
|
</document>
|
606 |
|
|
<document>
|
607 |
|
|
<docid>
|
608 |
|
|
<scope>demoDocument</scope>
|
609 |
|
|
<identifier>2</identifier>
|
610 |
|
|
<revision>1</revision>
|
611 |
|
|
</docid>
|
612 |
|
|
<documentType>eml://ecoinformatics.org/eml-2.0.0</documentType>
|
613 |
|
|
<documentURL>http://www.lternet.edu/~dcosta/document2.xml</documentURL>
|
614 |
|
|
</document>
|
615 |
|
|
</hrv:harvestList>
|
616 |
|
|
</pre>
|
617 |
|
|
<p>
|
618 |
|
|
After editing the Harvest List, ensure that the Harvest List XML file resides
|
619 |
|
|
at the appropriate location on disk as specified by the URL that was entered
|
620 |
|
|
during the <a href=#Registering>registration</a> process.
|
621 |
|
|
</p>
|
622 |
2185
|
costa
|
<p>
|
623 |
|
|
The <a href=./harvestListEditor.html>Harvest List Editor</a> is a tool that
|
624 |
|
|
assists in composing and editing a Harvest List. (Click
|
625 |
|
|
<a href=./harvestListEditor.html>here</a> for additional details.)
|
626 |
|
|
</p>
|
627 |
2131
|
costa
|
<h5><a name="Preparing">Preparing EML Documents for harvest</a></h5>
|
628 |
|
|
<p>
|
629 |
|
|
To prepare a set of EML documents for harvest, ensure that the following is
|
630 |
|
|
true for each document:
|
631 |
|
|
<ul>
|
632 |
|
|
<li>The document contains valid EML</li>
|
633 |
|
|
<li>The document is specified in a <document> element in the
|
634 |
|
|
site's Harvest List, as described above</li>
|
635 |
|
|
<li>The file resides at the appropriate location on disk as specified
|
636 |
|
|
by its URL in the Harvest List</li>
|
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|
|
</ul>
|
638 |
|
|
</p>
|
639 |
|
|
<h5><a name="Reviewing" >Reviewing Harvester Reports to the Site Contact</a></h5>
|
640 |
|
|
<P>
|
641 |
|
|
After every scheduled harvest that takes place at a particular Harvest
|
642 |
|
|
Site, Harvester will send an email report to the Site Contact detailing the
|
643 |
|
|
operations that were performed during the harvest.
|
644 |
|
|
The report will contain information about the operations that were
|
645 |
|
|
performed by Harvester at that site, such as
|
646 |
|
|
which EML documents were harvested and whether any errors were encountered.
|
647 |
|
|
</P>
|
648 |
|
|
<P>
|
649 |
|
|
The Site Contact should review the report, paying particularly
|
650 |
|
|
close attention to any errors that are reported. Errors are indicated
|
651 |
|
|
by operations that display a status value of 1, while operations that
|
652 |
|
|
display a status value of 0 indicate that the operation completed
|
653 |
|
|
successfully.
|
654 |
|
|
</P>
|
655 |
|
|
<p>
|
656 |
|
|
When errors are reported,
|
657 |
|
|
the Site Contact should try to determine whether the source of the error
|
658 |
|
|
is something that can be corrected at the site. Common causes of errors
|
659 |
|
|
might be:
|
660 |
|
|
<ul>
|
661 |
|
|
<li>A document URL specified in the Harvest List does not match
|
662 |
|
|
the location of the actual EML file on the disk</li>
|
663 |
|
|
<li>The Harvest List does not contain valid XML as specified in
|
664 |
|
|
the <a href=../../lib/harvester/harvestList.xsd>harvestList.xsd</a> schema</li>
|
665 |
|
|
<li>The URL to the Harvest List that was specified during
|
666 |
|
|
registration with Harvester does not match the actual location of
|
667 |
|
|
the Harvest List on the disk</li>
|
668 |
|
|
<li>An EML document that Harvester attempted to upload to Metacat does
|
669 |
|
|
not contain valid EML</li>
|
670 |
|
|
</ul>
|
671 |
|
|
</P>
|
672 |
|
|
<p>
|
673 |
|
|
If the Site Contact is unable to determine the cause of the error and its
|
674 |
|
|
resolution, he or she should contact the Harvester Administrator for assistance.
|
675 |
|
|
</p>
|
676 |
|
|
<a href="./properties.html">Back</a> |
|
677 |
|
|
<a href="./metacattour.html">Home</a> |
|
678 |
|
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