|
1
|
<!--
|
|
2
|
* '$RCSfile$'
|
|
3
|
* Purpose: web page describing the installation of Metacat
|
|
4
|
* Copyright: 2000 Regents of the University of California and the
|
|
5
|
* National Center for Ecological Analysis and Synthesis
|
|
6
|
* Authors: Chad Berkley
|
|
7
|
*
|
|
8
|
* '$Author: harris $'
|
|
9
|
* '$Date: 2006-01-25 16:41:45 -0800 (Wed, 25 Jan 2006) $'
|
|
10
|
* '$Revision: 2903 $'
|
|
11
|
*
|
|
12
|
*
|
|
13
|
-->
|
|
14
|
|
|
15
|
<!DOCTYPE html PUBLIC "-//W3C//DTD html 4.0//EN">
|
|
16
|
<html>
|
|
17
|
|
|
18
|
<head>
|
|
19
|
<title>Metacat Installation Instructions</title>
|
|
20
|
<link rel="stylesheet" type="text/css" href="@docrooturl@default.css">
|
|
21
|
</head>
|
|
22
|
|
|
23
|
<body>
|
|
24
|
|
|
25
|
<table class="tabledefault" width="100%">
|
|
26
|
<tr><td rowspan="2"><img src="@docrooturl@images/KNBLogo.gif"></td>
|
|
27
|
<td colspan="7">
|
|
28
|
<div class="title">Metacat UNIX Installation Instructions</div>
|
|
29
|
</td>
|
|
30
|
</tr>
|
|
31
|
<tr>
|
|
32
|
<td><a href="@server@/" class="toollink"> KNB Home </a></td>
|
|
33
|
<td><a href="@server@/data.html" class="toollink"> Data </a></td>
|
|
34
|
<td><a href="@server@/people.html" class="toollink"> People </a></td>
|
|
35
|
<td><a href="@server@/informatics" class="toollink"> Informatics </a></td>
|
|
36
|
<td><a href="@server@/biodiversity" class="toollink"> Biocomplexity </a></td>
|
|
37
|
<td><a href="@server@/education" class="toollink"> Education </a></td>
|
|
38
|
<td><a href="@server@/software" class="toollink"> Software </a></td>
|
|
39
|
</tr>
|
|
40
|
</table>
|
|
41
|
<hr>
|
|
42
|
|
|
43
|
<table class="tabledefault" width="100%">
|
|
44
|
<td class="tablehead" colspan="2"><p class="emphasis">***Disclaimer***</p></td>
|
|
45
|
<tr>
|
|
46
|
<td>
|
|
47
|
<p class="emphasis">
|
|
48
|
These installation instructions are meant for a systems administrator/DBA
|
|
49
|
or someone who is an advanced computer user. They are NOT meant for
|
|
50
|
the average computer user. Please realize that by executing these
|
|
51
|
instructions, you may have to trouble shoot many advanced issues yourself.
|
|
52
|
</td>
|
|
53
|
</tr>
|
|
54
|
</table>
|
|
55
|
|
|
56
|
<table class="tabledefault" width="100%">
|
|
57
|
<td class="tablehead" colspan="2"><p>Pre-Installation</p></td>
|
|
58
|
<tr>
|
|
59
|
<td>
|
|
60
|
<p class="header">Minimum Requirements</p>
|
|
61
|
<p>
|
|
62
|
Installing Metacat requires a server running an SQL92 compliant database
|
|
63
|
(Oracle 8i recommended) with at least 128MB RAM, and a Pentium III class
|
|
64
|
processor or higher. The amount of disk space required depends on the
|
|
65
|
size of your RDBMS tablespace (which should be at least 10 MB,
|
|
66
|
however Metacat itself requires only about 1 MB of free space after
|
|
67
|
installation. These instructions assume a Linux environment but may
|
|
68
|
work on other UNIX type environments, however this has not been tested.
|
|
69
|
</p>
|
|
70
|
<p class = "header">Additional Required Software</p>
|
|
71
|
<p>
|
|
72
|
The server on which you wish to install Metacat must have the following
|
|
73
|
software installed and running correctly before attempting to install
|
|
74
|
Metacat.
|
|
75
|
<ul>
|
|
76
|
<li><a href="http://www.oracle.com">Oracle 8i</a> (or another SQL92
|
|
77
|
compliant RDBMS like Postgres)</li>
|
|
78
|
<li><a href="http://jakarta.apache.org/ant/index.html">Apache Jakarta-Ant</a>
|
|
79
|
</li>
|
|
80
|
<li><a href="http://jakarta.apache.org/tomcat/index.html">Apache Jakarta-Tomcat</a>
|
|
81
|
<p class="emphasis">Note: For a more robust web serving environment,
|
|
82
|
Apache web server should
|
|
83
|
be installed along with Tomcat and the two should be integrated
|
|
84
|
as described on the Apache web site.</p>
|
|
85
|
</li>
|
|
86
|
</ul>
|
|
87
|
</p>
|
|
88
|
</td>
|
|
89
|
</tr>
|
|
90
|
</table>
|
|
91
|
|
|
92
|
<table class="tabledefault" width="100%">
|
|
93
|
<td class="tablehead" colspan="2"><p>Aditional Software Setup</p></td>
|
|
94
|
<tr>
|
|
95
|
<td>
|
|
96
|
<p class="header">Java</p>
|
|
97
|
<p>You'll need a recent Java SDK; j2sdk1.4.2 or later is required. We haven't
|
|
98
|
tested with any of the 1.5.x versions yet, so probably best to stay with 1.4.x.
|
|
99
|
Make sure that JAVA_HOME environment variable is properly set and that both
|
|
100
|
java and javac are on your PATH.
|
|
101
|
</p>
|
|
102
|
<p class="header">Oracle 8i or Postgres</p>
|
|
103
|
<p><i>Oracle:</i><br>
|
|
104
|
The Oracle RDBMS must be installed and running as a daemon on the system.
|
|
105
|
In addition the JDBC listener must be enabled. You can enable it by
|
|
106
|
logging in as your Oracle user and typing the following:
|
|
107
|
<pre>lsnrctl start</pre>
|
|
108
|
Your instance should have a table space of at least 5 MB (10 MB or higher
|
|
109
|
recommended). You should also have a username specific to Metacat
|
|
110
|
created and enabled. This user must have most normal permissions
|
|
111
|
including CREATE SESSION, CREATE TABLE, CREATE INDEX, CREATE TRIGGER,
|
|
112
|
EXECUTE PROCEDURE, EXECUTE TYPE, etc. If an action is unexplainably
|
|
113
|
rejected by Metacat it is probably because the user permissions are not
|
|
114
|
correctly set.
|
|
115
|
</p>
|
|
116
|
<p><i>Postgres:</i><br>
|
|
117
|
Postgres can be easily installed on most linux distributions and on
|
|
118
|
Windows (using cygwin) and Mac OS X. Using Fedora Core or RedHat Linux,
|
|
119
|
you can install the rpms for postgres and then run
|
|
120
|
<code>/etc/init.d/postgresql start</code> in order to start the database.
|
|
121
|
This initializes the data files. You need to do a bit of configuration
|
|
122
|
to create a database and set up a user account and allow internet access
|
|
123
|
via jdbc. See the postgres documentation for this, but here is a quick
|
|
124
|
start:
|
|
125
|
<ul>
|
|
126
|
<li>Switch to the "postgres" user account and edit "data/pg_hba.conf", adding the following line to the file:<br>
|
|
127
|
<code>host metacat metacat 127.0.0.1 255.255.255.255 password</code><br>
|
|
128
|
If your host uses IPv6 addresses, you made need this line instead:
|
|
129
|
<code>host metacat metacat ::1 ffff:ffff:ffff:ffff:ffff:ffff:ffff:ffff password</code></li>
|
|
130
|
<li>Edit the "data/postgres.conf" file and uncomment and edit the line
|
|
131
|
starting with "tcpip_socket" so that it reads
|
|
132
|
<code>tcpip_socket = true</code></li>
|
|
133
|
<li>Run <code>createdb metacat</code> to create a new database</li>
|
|
134
|
<li>Run <code>psql metacat</code> to log in using the postgres account and create a new "metacat" user account
|
|
135
|
<ul>
|
|
136
|
<li>In postgres, run <code>CREATE USER metacat WITH UNENCRYPTED PASSWORD 'apasswordyoulike';</code></li>
|
|
137
|
<li>This creates a new account called metacat on the database named metacat</li>
|
|
138
|
<li>Note: there are many ways to do this, so others such as using
|
|
139
|
ENCRYPTED passwords will work fine.</li>
|
|
140
|
</ul>
|
|
141
|
</li>
|
|
142
|
<li>Exit the postgres account back to root and restart the postgres
|
|
143
|
database with <code>/etc/init.d/postgresql restart</code></li>
|
|
144
|
<li>Test logging into the postgres db using the metacat account with
|
|
145
|
the following command:
|
|
146
|
<code>psql -U metacat -W -h localhost metacat</code></li>
|
|
147
|
</ul>
|
|
148
|
</p>
|
|
149
|
<p class="header">Ant</p>
|
|
150
|
<p>
|
|
151
|
Ant is a Java based build application similar to Make on UNIX systems.
|
|
152
|
It takes in installation parameters from a file in the root installation
|
|
153
|
directory named "build.xml". The Metacat CVS module contains a default
|
|
154
|
build.xml file that may require some modification upon installation. Ant
|
|
155
|
should be installed on the system and the "ant" executable shell script
|
|
156
|
should be available in the users path. We note that the current build is
|
|
157
|
not working with Ant 1.6.x, so you'll need to use an earler version. We have
|
|
158
|
successfully used Ant 1.5.1, 1.5.2, and some earlier versions.
|
|
159
|
</p>
|
|
160
|
<p class="header">Tomcat</p>
|
|
161
|
<p>
|
|
162
|
Install Tomcat into the directory of your choice. The directory in which
|
|
163
|
you install Tomcat itself will be referred to as the "$CATALINA_HOME".
|
|
164
|
We recommend that you install Tomcat version 5.0. More details about
|
|
165
|
Tomcat installation is available <a href=" http://jakarta.apache.org/tomcat/index.html">here</a>.
|
|
166
|
</p>
|
|
167
|
</td>
|
|
168
|
</tr>
|
|
169
|
</table>
|
|
170
|
|
|
171
|
<table class="tabledefault" width="100%">
|
|
172
|
<td class="tablehead" colspan="2"></td>
|
|
173
|
<tr>
|
|
174
|
<td>
|
|
175
|
<p>
|
|
176
|
Once all of the prerequisite software is installed as described above,
|
|
177
|
the installation of Metacat can begin. First you must have a current
|
|
178
|
version of the source distribution of Metacat. You can get it two ways.
|
|
179
|
Authorized users can check it out of the NCEAS
|
|
180
|
<a href="http://www.nceas.ucsb.edu/cgi-bin/cvsweb.cgi/xmltodb/">CVS</a>
|
|
181
|
system. You'll need both the "metacat" module and the "utilities" module to
|
|
182
|
be checked out in sibling directories. The command is as follows:
|
|
183
|
<pre>mkdir knb-software</pre>
|
|
184
|
<pre>cd knb-software</pre>
|
|
185
|
<pre>cvs checkout -P metacat</pre>
|
|
186
|
<pre>cvs checkout -P utilities</pre>
|
|
187
|
Or you can
|
|
188
|
<a href="@server@/software/download.html">download</a> a gzipped tar file
|
|
189
|
from this site.
|
|
190
|
</p>
|
|
191
|
<p><h2>Edit <code>build.properties</code> File</h2></p>
|
|
192
|
<p>
|
|
193
|
Once you have either checked out or unzipped and untarred the source
|
|
194
|
distribution, you can begin the installation process. Change into the
|
|
195
|
metacat directory and edit the file called "<code>build.properties</code>". You will need
|
|
196
|
to change a number of configuration properties to match the setup on
|
|
197
|
your system.
|
|
198
|
</p>
|
|
199
|
<p>
|
|
200
|
The properties that you will likely need to change will include
|
|
201
|
<code>tomcat</code>, <code>tomcatversion</code>, <code>webapps</code>,
|
|
202
|
<code>context</code>, <code>server</code>, <code>httpserver</code>,
|
|
203
|
<code>database</code>, <code>jdbc-connect</code>, <code>jdbc-base</code>,
|
|
204
|
<code>user</code>, <code>password</code>, <code>datafilepath</code>,
|
|
205
|
<code>inlinedatafilepath</code>, <code>cvsroot</code>,
|
|
206
|
<code>default-style</code>, and <code>administrators</code>.
|
|
207
|
Each is described in detail in the table below.
|
|
208
|
</p>
|
|
209
|
Properties you will likely need to change:
|
|
210
|
<br><br>
|
|
211
|
<table border="1">
|
|
212
|
<tr>
|
|
213
|
<td><b>Property</b></td>
|
|
214
|
<td><b>Description</b></td>
|
|
215
|
<td><b>Default value and examples of other values</b></td>
|
|
216
|
</tr>
|
|
217
|
<tr>
|
|
218
|
<td>tomcat</td>
|
|
219
|
<td>The tomcat property is the location in which tomcat is installed.</td>
|
|
220
|
<td>Default:
|
|
221
|
<code>/usr/local/devtools/jakarta-tomcat</code>
|
|
222
|
<br><br>Example:
|
|
223
|
<code>C:/Tomcat5</code></td>
|
|
224
|
</tr>
|
|
225
|
<tr>
|
|
226
|
<td>tomcatversion</td>
|
|
227
|
<td>The tomcatversion property is the version of your Tomcat. You should
|
|
228
|
put tomcat3, tomcat4, or tomcat5 here.
|
|
229
|
</td>
|
|
230
|
<td>Default:
|
|
231
|
<code>tomcat5</code>
|
|
232
|
<br><br>Example:
|
|
233
|
<code>tomcat5</code>
|
|
234
|
</td>
|
|
235
|
</tr>
|
|
236
|
<tr>
|
|
237
|
<td>webapps</td>
|
|
238
|
<td>The webapps property is the location in which your tomcat servlet
|
|
239
|
contexts are installed. This is typically "TOMCAT_HOME/webapps",
|
|
240
|
where TOMCAT_HOME is the same value that you entered for the 'tomcat'
|
|
241
|
property above.
|
|
242
|
</td>
|
|
243
|
<td>Default:
|
|
244
|
<code>/var/www/org.ecoinformatics.knb</code>
|
|
245
|
<br><br>Example:
|
|
246
|
<code>C:/Tomcat5/webapps</code>
|
|
247
|
</td>
|
|
248
|
</tr>
|
|
249
|
<tr>
|
|
250
|
<td>context</td>
|
|
251
|
<td>The context property is the name of the servlet context in which you
|
|
252
|
want Metacat to be installed. This will determine the installation
|
|
253
|
directory for the servlet and many of the URLs that are used to access
|
|
254
|
the installed Metacat server.</td>
|
|
255
|
<td>Default:
|
|
256
|
<code>knb</code>
|
|
257
|
<br><br>Example:
|
|
258
|
<code>mycontext</code>
|
|
259
|
</td>
|
|
260
|
</tr>
|
|
261
|
<tr>
|
|
262
|
<td>server</td>
|
|
263
|
<td>The server property is hostname of for the server on which Metacat is
|
|
264
|
running (note that you should not include the 'http://' in the server
|
|
265
|
property). The server setting should include the port number
|
|
266
|
appended to the end if Tomcat is running stand-alone (see example).
|
|
267
|
</td>
|
|
268
|
<td>Default:
|
|
269
|
<code>knb.ecoinformatics.org</code>
|
|
270
|
<br><br>Example:
|
|
271
|
<code>somehost.university.edu:8080</code>
|
|
272
|
</td>
|
|
273
|
</tr>
|
|
274
|
<tr>
|
|
275
|
<td>httpserver</td>
|
|
276
|
<td>httpserver is the plain HTTP address on which Metacat is running
|
|
277
|
(note that you should not include the 'http://' in the httpserver
|
|
278
|
property).
|
|
279
|
The httpserver setting should include the HTTP plain port number
|
|
280
|
appended to the end if Tomcat is running stand-alone (see example).</td>
|
|
281
|
<td>Default:
|
|
282
|
<code>knb.ecoinformatics.org</code>
|
|
283
|
<br><br>Example:
|
|
284
|
<code>somehost.university.edu:8080</code>
|
|
285
|
</td>
|
|
286
|
</tr>
|
|
287
|
<tr>
|
|
288
|
<td>ldapUrl</td>
|
|
289
|
<td>URL to the LDAP server. The LDAP server is used in the default
|
|
290
|
authentication module to authenticate and identify users of the
|
|
291
|
system. To participate in the KNB network, you should leave this at
|
|
292
|
the default. But it can be changed if you want to use a
|
|
293
|
different directory of users.
|
|
294
|
</td>
|
|
295
|
<td>Default:
|
|
296
|
<code>ldap://ldap.ecoinformatics.org/dc=ecoinformatics,dc=org</code>
|
|
297
|
</td>
|
|
298
|
</tr>
|
|
299
|
<tr>
|
|
300
|
<td>database</td>
|
|
301
|
<td>Select the database to use for metadata storage.
|
|
302
|
Valid values are <code>oracle</code>, <code>postgresql</code>, or
|
|
303
|
<code>sqlserver</code>. Note that sqlserver support is minimal and
|
|
304
|
probably will not work without substantial changes on your part,
|
|
305
|
possibly including code changes. We have not revcently tested on
|
|
306
|
sqlserver.
|
|
307
|
</td>
|
|
308
|
<td>Default:
|
|
309
|
<code>oracle</code>
|
|
310
|
<br><br>Other possible values:
|
|
311
|
<code>postgresql</code>
|
|
312
|
<code>sqlserver</code>
|
|
313
|
</td>
|
|
314
|
</tr>
|
|
315
|
<tr>
|
|
316
|
<td>jdbc-connect</td>
|
|
317
|
<td>The JDBC connection string used to connect to the database.</td>
|
|
318
|
<td>Default:
|
|
319
|
<code>jdbc:oracle:thin:@metacat.nceas.ucsb.edu:1521:knb</code>
|
|
320
|
</td>
|
|
321
|
<tr>
|
|
322
|
<td>jdbc-base</td>
|
|
323
|
<td>The base directory for locating JDBC jar files (not needed for postgresql).</td>
|
|
324
|
<td>Default:
|
|
325
|
<code>/usr/oracle/jdbc/lib</code>
|
|
326
|
<br><br>Example:
|
|
327
|
<code>C:/jdev10g/jdbc/lib</code><br>
|
|
328
|
</td>
|
|
329
|
</tr>
|
|
330
|
<tr>
|
|
331
|
<td>user</td>
|
|
332
|
<td>The database user name that you set up to use Metacat. For example,
|
|
333
|
an Oracle username.</td>
|
|
334
|
<td>Default:
|
|
335
|
<code>knb</code>
|
|
336
|
<br><br>Example:
|
|
337
|
<code>metacatdb</code>
|
|
338
|
</td>
|
|
339
|
</tr>
|
|
340
|
<tr>
|
|
341
|
<td>password</td>
|
|
342
|
<td>The database password that you set up to use Metacat.</td>
|
|
343
|
<td>Default:
|
|
344
|
<code>yourPasswordHere</code>
|
|
345
|
<br><br>Example:
|
|
346
|
<code>metacat123</code>
|
|
347
|
</td>
|
|
348
|
</tr>
|
|
349
|
<tr>
|
|
350
|
<td>datafilepath</td>
|
|
351
|
<td>The datafilepath is the directory to store data files.</td>
|
|
352
|
<td>Default:
|
|
353
|
<code>/var/metacat/data</code>
|
|
354
|
<br><br>Example:
|
|
355
|
<code>C:/Tomcat5/data/knb/data</code>
|
|
356
|
</td>
|
|
357
|
</tr>
|
|
358
|
<tr>
|
|
359
|
<td>inlinedatafilepath</td>
|
|
360
|
<td>The inlinedatafilepath is the directory to store inline data that
|
|
361
|
has been extracted from EML documents.</td>
|
|
362
|
<td>Default:
|
|
363
|
<code>/var/metacat/inline-data</code>
|
|
364
|
<br><br>Example:
|
|
365
|
<code>C:/Tomcat5/data/knb/inlinedata</code>
|
|
366
|
</td>
|
|
367
|
</tr>
|
|
368
|
<tr>
|
|
369
|
<td>default-style</td>
|
|
370
|
<td>The default-style parameter defines the "style-set" that is to be used
|
|
371
|
by default when the qformat parameter is missing or set to "html"
|
|
372
|
during a query. It is set to "knb", which is one of the styles that
|
|
373
|
ships with the default metacat distribution. Other possible settings
|
|
374
|
are shown in the examples to the right.</td>
|
|
375
|
<td>Default:
|
|
376
|
<code>knb</code>
|
|
377
|
<br><br>Examples:
|
|
378
|
<pre><code>default esa knb2 nceas nrs obfs specnet</code></pre>
|
|
379
|
</td>
|
|
380
|
</tr>
|
|
381
|
<tr>
|
|
382
|
<td>administrators</td>
|
|
383
|
<td>The administrators parameter lists the accounts that are allowed to
|
|
384
|
perform administrative actions such as rebuilding indices for
|
|
385
|
documents. The list can can contain more than one account separated
|
|
386
|
by colons.</td>
|
|
387
|
<td>Default:
|
|
388
|
<code>uid=jones,o=NCEAS,dc=ecoinformatics,dc=org</code>
|
|
389
|
<br><br>Examples:
|
|
390
|
<code>uid=localadmin,o=ucnrs.org</code>
|
|
391
|
</td>
|
|
392
|
</tr>
|
|
393
|
|
|
394
|
<!-- start lsid stuff -->
|
|
395
|
<tr>
|
|
396
|
<td>authority.context</td>
|
|
397
|
<td>This is the context for the (Life Sciences Identifier) LSID authority.
|
|
398
|
LSID support is an optional feature which can be configured to provide
|
|
399
|
metacat access to LSID clients. For more information on LSID's see <a href="http://wiki.gbif.org/guidwiki/wikka.php?wakka=LSID">TDWG
|
|
400
|
site</a>.</td>
|
|
401
|
<td>Default: authority</td>
|
|
402
|
</tr>
|
|
403
|
<tr>
|
|
404
|
<td>config.lsidauthority</td>
|
|
405
|
<td>This is the name of the LSID authority that this metacat should use.
|
|
406
|
This authority needs to be defined as SRV record in a DNS.</td>
|
|
407
|
<td>Default: ecoinformatics.org</td>
|
|
408
|
</tr>
|
|
409
|
</table>
|
|
410
|
<br>
|
|
411
|
<p>
|
|
412
|
Note that the build file is preconfigured to install Metacat either using
|
|
413
|
Oracle, PostgreSQL, or Microsoft SQL Server as a backend database.
|
|
414
|
To change the database system, simply change the value of the 'database'
|
|
415
|
property to be the name of the database target that you wish to use
|
|
416
|
(either 'oracle', 'postgresql', or 'sqlserver').
|
|
417
|
</p>
|
|
418
|
Other properties in <code>build.properties</code> that you can (but generally need not) change:<br />
|
|
419
|
<br>
|
|
420
|
<table border="1">
|
|
421
|
<tr>
|
|
422
|
<td><b>Property</b></td>
|
|
423
|
<td><b>Description</b></td>
|
|
424
|
<td><b>Default value and examples of other values</b></td>
|
|
425
|
</tr>
|
|
426
|
<tr>
|
|
427
|
<td>inst.cgi.dir</td>
|
|
428
|
<td>Installation directory for registry CGI scripts</td>
|
|
429
|
<td>Default:
|
|
430
|
<code>/var/www/cgi-knb</code>
|
|
431
|
</td>
|
|
432
|
</tr>
|
|
433
|
<tr>
|
|
434
|
<td>cgi-prefix</td>
|
|
435
|
<td> </td>
|
|
436
|
<td>Default:
|
|
437
|
<code>http://knb.ecoinformatics.org/cgi-bin</code>
|
|
438
|
</td>
|
|
439
|
</tr>
|
|
440
|
<tr>
|
|
441
|
<td>knb-site-url</td>
|
|
442
|
<td>This is the URL to the web context root for the knb site.
|
|
443
|
It is used for the qformat=knb skin only.</td>
|
|
444
|
<td>Default:
|
|
445
|
<code>http://knb.ecoinformatics.org</code>
|
|
446
|
</td>
|
|
447
|
</tr>
|
|
448
|
<tr>
|
|
449
|
<td>forcereplicationwaitingtime</td>
|
|
450
|
<td>The waiting time before replication is forced to begin after
|
|
451
|
uploading a package. The default value should usually suffice.</td>
|
|
452
|
<td>Default:
|
|
453
|
<code>30000</code>
|
|
454
|
<code> </code>
|
|
455
|
</td>
|
|
456
|
</tr>
|
|
457
|
<tr>
|
|
458
|
<td>cvsroot</td>
|
|
459
|
<td>CVS access to retrieve latest EML. Only used by
|
|
460
|
developers in building the release.</td>
|
|
461
|
<td>Default:
|
|
462
|
<code><pre>:ext:${env.USER}@cvs.ecoinformatics.org:/cvs</pre></code>
|
|
463
|
Example:
|
|
464
|
<code><pre>:ext:myaccount@cvs.ecoinformatics.org:/cvs</pre></code>
|
|
465
|
</td>
|
|
466
|
</tr>
|
|
467
|
</table>
|
|
468
|
<p>
|
|
469
|
Metacat has a number of additional settable properties in file
|
|
470
|
<code>metacat/lib/metacat.properties</code>. Under most circumstances,
|
|
471
|
you will not need to modify this file because the properties of interest
|
|
472
|
to you can be controlled by editing <code>build.properties</code> as
|
|
473
|
described above. To learn more about Metacat's additional properties,
|
|
474
|
see <a href="./properties.html">Metacat Properties File</a>.
|
|
475
|
</p>
|
|
476
|
<p class="emphasis">
|
|
477
|
Note: When setting properties, DO NOT add a trailing slash [/] to the end of any paths that are specified.
|
|
478
|
Metacat will not function correctly if you do so.
|
|
479
|
</p>
|
|
480
|
|
|
481
|
</td>
|
|
482
|
</tr>
|
|
483
|
</table>
|
|
484
|
|
|
485
|
<table class="tabledefault" width="100%">
|
|
486
|
<td class="tablehead" colspan="2"><p><h2>Compilation and Installation</h2></p></td>
|
|
487
|
<tr>
|
|
488
|
<td>
|
|
489
|
<a name="protocol"></a>
|
|
490
|
<p>
|
|
491
|
Ant allows compilation and installation to be done in one step.
|
|
492
|
Change into the metacat directory and type:
|
|
493
|
<pre><b>ant install</b></pre>
|
|
494
|
or, if you are upgrading an existing installation, type:
|
|
495
|
<pre><b>ant clean upgrade</b></pre>
|
|
496
|
<p>
|
|
497
|
You should see a bunch of messages telling you the progress of compilation
|
|
498
|
and installation. When it is done you should see the message
|
|
499
|
BUILD SUCCESSFUL
|
|
500
|
and you should be returned to a UNIX command prompt. If you do not see
|
|
501
|
the message BUILD SUCCESSFUL then there was an error that you need to
|
|
502
|
resolve.
|
|
503
|
This may come up if you are logged in as a user that does not have write
|
|
504
|
access to one or more of the directories that are listed in the build.xml
|
|
505
|
file, or if any of the paths to files are not configured correctly in the
|
|
506
|
"config" target.
|
|
507
|
</p>
|
|
508
|
<p>
|
|
509
|
Note: The 'data' directories that are indicated in the 'datafilepath' and
|
|
510
|
'inlinedatafilepath' build properties must be writeable
|
|
511
|
by user account under which Tomcat runs or you will not be able to upload
|
|
512
|
data files to the system.
|
|
513
|
</p>
|
|
514
|
|
|
515
|
<p class="header"><h2>SQL Scripts</h2></p>
|
|
516
|
<p>
|
|
517
|
You now need to set up the table structure in your database. You can do
|
|
518
|
either do this using the ant build system, or by manually running the
|
|
519
|
scripts using a sql utility.
|
|
520
|
</p>
|
|
521
|
<p><b>WARNING: Do NOT run this on an existing metacat installation as it
|
|
522
|
will delete all of your data. If you have an existing metacat installation,
|
|
523
|
see the instructions for "Upgrading" below.</b></p>
|
|
524
|
|
|
525
|
<p>To run the scripts using ant, type <code>ant installdb</code>. This does
|
|
526
|
not work for postgres, so you'll need to run the xmltables-postgres.sql script
|
|
527
|
manually (see next paragraph).
|
|
528
|
</p>
|
|
529
|
<p>To run the scripts manually, change to the
|
|
530
|
metacat/build/src directory. Then run you RDBMS's SQL utility. In Oracle it is
|
|
531
|
SQLPlus. This tutorial assumes an Oracle database so this example is for
|
|
532
|
SQLPlus. Login as the oracle user that was set up for use with Metacat.
|
|
533
|
At the SQLPlus prompt type the following: <pre><b>@xmltables.sql;</b></pre>
|
|
534
|
For postgres, use a command like:
|
|
535
|
<code>psql -U metacat -W -h localhost -f build/src/xmltables-postgres.sql metacat</code>
|
|
536
|
</p>
|
|
537
|
<p>Either way,
|
|
538
|
you should see a bunch of output showing the creation of the Metacat table
|
|
539
|
space. The first time you run this script you will get several errors at the
|
|
540
|
beginning saying that you cannot drop a table/index/trigger because it
|
|
541
|
does not exist. This is normal. Any other errors besides this need to be
|
|
542
|
resolved before continuing. The script file name for PostgreSQL is
|
|
543
|
xmltables-postgres.sql and for Microsoft SQL server is
|
|
544
|
xmltables-sqlserver.sql.
|
|
545
|
</p>
|
|
546
|
<p>
|
|
547
|
If the script has run correctly you should be able to type
|
|
548
|
<pre>describe xml_documents</pre> and it should show:
|
|
549
|
<pre>
|
|
550
|
Name Null? Type
|
|
551
|
-------------- ------------ ----------------
|
|
552
|
DOCID NOT NULL VARCHAR2(250)
|
|
553
|
ROOTNODEID NUMBER(20)
|
|
554
|
DOCNAME VARCHAR2(100)
|
|
555
|
DOCTYPE VARCHAR2(100)
|
|
556
|
DOCTITLE VARCHAR2(1000)
|
|
557
|
USER_OWNER VARCHAR2(100)
|
|
558
|
USER_UPDATED VARCHAR2(100)
|
|
559
|
SERVER_LOCATION NUMBER(20)
|
|
560
|
REV NUMBER(10)
|
|
561
|
DATE_CREATED DATE
|
|
562
|
DATE_UPDATED DATE
|
|
563
|
PUBLIC_ACCESS NUMBER(1)
|
|
564
|
UPDATED NUMBER(1)
|
|
565
|
</pre>
|
|
566
|
</p>
|
|
567
|
<p class="header"><h2>Registering schemas and DTDs</h2></p>
|
|
568
|
<p>Once the tables have been created, you should also register the Ecological
|
|
569
|
Metadata Language (EML) DTDs and schemas. <b>However, note that you should
|
|
570
|
NOT do this if you are upgrading an existing installation -- the upgrade
|
|
571
|
scripts take care of it for you (see the next section).</b> If you are
|
|
572
|
installing new, you can register the schema documents by running:</p>
|
|
573
|
<pre><b>ant register-schemas</b></pre>
|
|
574
|
<p>This command registers the EML DTDs' and schemas' location in the
|
|
575
|
metacat server. Your database username and password have to be set correctly
|
|
576
|
for this to work. Also, if for some reason running this script from ant
|
|
577
|
does not work, you could instead try running "build/src/loaddtdschema.sql"
|
|
578
|
from your sql utility (but be sure to use the version in the 'build' directory
|
|
579
|
that has been customized for your installation).
|
|
580
|
</p>
|
|
581
|
<p class="header"><h2>Upgrading SQL Scripts</h2></p>
|
|
582
|
<p>
|
|
583
|
If you have an existing metacat installation, you should not run the install
|
|
584
|
script because it will replace all of the older tables with new, empty
|
|
585
|
copies of the tables. Thus you would lose your data! Instead, you can
|
|
586
|
run some upgrade scripts that will change the table structure as needed for
|
|
587
|
the new version. If you are skipping versions, run each upgrade script
|
|
588
|
for the intermediate versions as well. Currently the upgrade scripts are:
|
|
589
|
</p>
|
|
590
|
<ul>
|
|
591
|
<li>build/src/upgrade-db-to-1.2.sql</li>
|
|
592
|
<li>build/src/upgrade-db-to-1.3.sql</li>
|
|
593
|
<li>build/src/upgrade-db-to-1.4.sql</li>
|
|
594
|
<li>build/src/upgrade-db-to-1.5.sql</li>
|
|
595
|
</ul>
|
|
596
|
<p>
|
|
597
|
So, if you had an existing metacat 1.0 installation and you were upgrading
|
|
598
|
to 1.5, you would need to run all four scripts in sequence:
|
|
599
|
upgrade-db-to-1.2.sql, upgrade-db-to-1.3.sql,
|
|
600
|
upgrade-db-to-1.4.sql, and upgrade-db-to-1.5.sql.
|
|
601
|
However, if you were starting from a Metacat 1.4.x
|
|
602
|
installation, you would only need to run the upgrade-db-to-1.5.sql script.
|
|
603
|
Be sure to use the version of the scripts from the 'build' directory: they
|
|
604
|
are customized for your installation in that directory.
|
|
605
|
</p>
|
|
606
|
</p>
|
|
607
|
<h2>Restart Tomcat</h2>
|
|
608
|
<p>
|
|
609
|
Once you have successfully installed Metacat, there is one more step. Tomcat
|
|
610
|
(and Apache if you have Tomcat integrated with it) must be restarted. To do
|
|
611
|
this, login as the user that runs your tomcat server (often "tomcat"),
|
|
612
|
go to $CATALINA_HOME/bin and type:
|
|
613
|
<pre>
|
|
614
|
./shutdown.sh
|
|
615
|
./startup.sh
|
|
616
|
</pre>
|
|
617
|
In the Tomcat startup messages you should see something in log file like:
|
|
618
|
<pre>
|
|
619
|
MetacatServlet Initialize
|
|
620
|
Context log path="/metadata" :Metacat: init
|
|
621
|
MetacatServlet Initialize
|
|
622
|
</pre>
|
|
623
|
If you see that message Tomcat is successfully loading the Metacat servlet.
|
|
624
|
Next, try to run your new servlet. Go to a web browser and type:
|
|
625
|
<pre>http://yourserver.yourdomain.com/yourcontext/</pre>
|
|
626
|
You should substitute your context name for "yourcontext" in the url above.
|
|
627
|
If everything is working correctly, you should see a query page followed
|
|
628
|
by an empty result set. Note that if you do not have Tomcat integrated with
|
|
629
|
Apache you will probably have to type
|
|
630
|
<pre>http://yourserver.yourdomain.com:8080/yourcontext/</pre>
|
|
631
|
</p>
|
|
632
|
</td>
|
|
633
|
</tr>
|
|
634
|
</table>
|
|
635
|
|
|
636
|
</body>
|
|
637
|
</html>
|
