| 1 |
51
|
jones
|
/**
|
| 2 |
203
|
jones
|
* '$RCSfile$'
|
| 3 |
|
|
* Purpose: A Class that implements a metadata catalog as a java Servlet
|
| 4 |
|
|
* Copyright: 2000 Regents of the University of California and the
|
| 5 |
|
|
* National Center for Ecological Analysis and Synthesis
|
| 6 |
3028
|
perry
|
* Authors: Matt Jones, Dan Higgins, Jivka Bojilova, Chad Berkley, Matthew Perry
|
| 7 |
348
|
jones
|
* Release: @release@
|
| 8 |
154
|
jones
|
*
|
| 9 |
203
|
jones
|
* '$Author$'
|
| 10 |
|
|
* '$Date$'
|
| 11 |
|
|
* '$Revision$'
|
| 12 |
669
|
jones
|
*
|
| 13 |
|
|
* This program is free software; you can redistribute it and/or modify
|
| 14 |
|
|
* it under the terms of the GNU General Public License as published by
|
| 15 |
|
|
* the Free Software Foundation; either version 2 of the License, or
|
| 16 |
|
|
* (at your option) any later version.
|
| 17 |
|
|
*
|
| 18 |
|
|
* This program is distributed in the hope that it will be useful,
|
| 19 |
|
|
* but WITHOUT ANY WARRANTY; without even the implied warranty of
|
| 20 |
|
|
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
|
| 21 |
|
|
* GNU General Public License for more details.
|
| 22 |
|
|
*
|
| 23 |
|
|
* You should have received a copy of the GNU General Public License
|
| 24 |
|
|
* along with this program; if not, write to the Free Software
|
| 25 |
|
|
* Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
|
| 26 |
51
|
jones
|
*/
|
| 27 |
|
|
|
| 28 |
|
|
package edu.ucsb.nceas.metacat;
|
| 29 |
|
|
|
| 30 |
2098
|
jones
|
import java.io.BufferedInputStream;
|
| 31 |
733
|
bojilova
|
import java.io.File;
|
| 32 |
2098
|
jones
|
import java.io.FileInputStream;
|
| 33 |
|
|
import java.io.IOException;
|
| 34 |
46
|
jones
|
import java.io.PrintWriter;
|
| 35 |
50
|
jones
|
import java.io.StringReader;
|
| 36 |
2098
|
jones
|
import java.net.MalformedURLException;
|
| 37 |
|
|
import java.net.URL;
|
| 38 |
|
|
import java.sql.PreparedStatement;
|
| 39 |
|
|
import java.sql.ResultSet;
|
| 40 |
|
|
import java.sql.SQLException;
|
| 41 |
2113
|
jones
|
import java.sql.Timestamp;
|
| 42 |
|
|
import java.text.ParseException;
|
| 43 |
|
|
import java.text.SimpleDateFormat;
|
| 44 |
46
|
jones
|
import java.util.Enumeration;
|
| 45 |
2893
|
sgarg
|
import java.util.HashMap;
|
| 46 |
46
|
jones
|
import java.util.Hashtable;
|
| 47 |
2312
|
jones
|
import java.util.Iterator;
|
| 48 |
2896
|
sgarg
|
import java.util.Properties;
|
| 49 |
2752
|
jones
|
import java.util.Timer;
|
| 50 |
1369
|
tao
|
import java.util.Vector;
|
| 51 |
2098
|
jones
|
import java.util.zip.ZipEntry;
|
| 52 |
|
|
import java.util.zip.ZipOutputStream;
|
| 53 |
46
|
jones
|
|
| 54 |
|
|
import javax.servlet.ServletConfig;
|
| 55 |
|
|
import javax.servlet.ServletContext;
|
| 56 |
|
|
import javax.servlet.ServletException;
|
| 57 |
2098
|
jones
|
import javax.servlet.ServletOutputStream;
|
| 58 |
46
|
jones
|
import javax.servlet.http.HttpServlet;
|
| 59 |
|
|
import javax.servlet.http.HttpServletRequest;
|
| 60 |
|
|
import javax.servlet.http.HttpServletResponse;
|
| 61 |
210
|
bojilova
|
import javax.servlet.http.HttpSession;
|
| 62 |
46
|
jones
|
|
| 63 |
2752
|
jones
|
import org.apache.log4j.Logger;
|
| 64 |
|
|
import org.apache.log4j.PropertyConfigurator;
|
| 65 |
2098
|
jones
|
import org.ecoinformatics.eml.EMLParser;
|
| 66 |
204
|
jones
|
|
| 67 |
2098
|
jones
|
import com.oreilly.servlet.multipart.FilePart;
|
| 68 |
|
|
import com.oreilly.servlet.multipart.MultipartParser;
|
| 69 |
|
|
import com.oreilly.servlet.multipart.ParamPart;
|
| 70 |
|
|
import com.oreilly.servlet.multipart.Part;
|
| 71 |
|
|
|
| 72 |
2570
|
jones
|
import edu.ucsb.nceas.utilities.Options;
|
| 73 |
2912
|
harris
|
import edu.ucsb.nceas.metacat.spatial.MetacatSpatialQuery;
|
| 74 |
|
|
import edu.ucsb.nceas.metacat.spatial.MetacatSpatialDocument;
|
| 75 |
|
|
import edu.ucsb.nceas.metacat.spatial.MetacatSpatialDataset;
|
| 76 |
2919
|
harris
|
import edu.ucsb.nceas.metacat.spatial.MetacatSpatialConstants;
|
| 77 |
2570
|
jones
|
|
| 78 |
46
|
jones
|
/**
|
| 79 |
|
|
* A metadata catalog server implemented as a Java Servlet
|
| 80 |
2169
|
sgarg
|
*
|
| 81 |
205
|
jones
|
* <p>
|
| 82 |
2098
|
jones
|
* Valid parameters are: <br>
|
| 83 |
|
|
* action=query -- query the values of all elements and attributes and return a
|
| 84 |
|
|
* result set of nodes <br>
|
| 85 |
|
|
* action=squery -- structured query (see pathquery.dtd) <br>
|
| 86 |
|
|
* action= -- export a zip format for data packadge <br>
|
| 87 |
|
|
* action=read -- read any metadata/data file from Metacat and from Internet
|
| 88 |
|
|
* <br>
|
| 89 |
|
|
* action=insert -- insert an XML document into the database store <br>
|
| 90 |
|
|
* action=update -- update an XML document that is in the database store <br>
|
| 91 |
|
|
* action=delete -- delete an XML document from the database store <br>
|
| 92 |
|
|
* action=validate -- vallidate the xml contained in valtext <br>
|
| 93 |
|
|
* doctype -- document type list returned by the query (publicID) <br>
|
| 94 |
|
|
* qformat=xml -- display resultset from query in XML <br>
|
| 95 |
|
|
* qformat=html -- display resultset from query in HTML <br>
|
| 96 |
|
|
* qformat=zip -- zip resultset from query <br>
|
| 97 |
|
|
* docid=34 -- display the document with the document ID number 34 <br>
|
| 98 |
|
|
* doctext -- XML text of the document to load into the database <br>
|
| 99 |
|
|
* acltext -- XML access text for a document to load into the database <br>
|
| 100 |
|
|
* dtdtext -- XML DTD text for a new DTD to load into Metacat XML Catalog <br>
|
| 101 |
|
|
* query -- actual query text (to go with 'action=query' or 'action=squery')
|
| 102 |
|
|
* <br>
|
| 103 |
|
|
* valtext -- XML text to be validated <br>
|
| 104 |
|
|
* action=getaccesscontrol -- retrieve acl info for Metacat document <br>
|
| 105 |
|
|
* action=getdoctypes -- retrieve all doctypes (publicID) <br>
|
| 106 |
|
|
* action=getdtdschema -- retrieve a DTD or Schema file <br>
|
| 107 |
|
|
* action=getdataguide -- retrieve a Data Guide <br>
|
| 108 |
|
|
* action=getprincipals -- retrieve a list of principals in XML <br>
|
| 109 |
|
|
* datadoc -- data document name (id) <br>
|
| 110 |
2113
|
jones
|
* action=getlog -- get a report of events that have occurred in the system<br>
|
| 111 |
|
|
* ipAddress -- filter on one or more IP addresses<br>
|
| 112 |
|
|
* principal -- filter on one or more principals (LDAP DN syntax)<br>
|
| 113 |
|
|
* docid -- filter on one or more document identifiers (with revision)<br>
|
| 114 |
|
|
* event -- filter on event type (e.g., read, insert, update, delete)<br>
|
| 115 |
|
|
* start -- filter out events before the start date-time<br>
|
| 116 |
|
|
* end -- filter out events before the end date-time<br>
|
| 117 |
2098
|
jones
|
* <p>
|
| 118 |
|
|
* The particular combination of parameters that are valid for each particular
|
| 119 |
|
|
* action value is quite specific. This documentation will be reorganized to
|
| 120 |
|
|
* reflect this information.
|
| 121 |
46
|
jones
|
*/
|
| 122 |
2098
|
jones
|
public class MetaCatServlet extends HttpServlet
|
| 123 |
|
|
{
|
| 124 |
2582
|
tao
|
private static Hashtable sessionHash = new Hashtable();
|
| 125 |
2752
|
jones
|
private Timer timer = null;
|
| 126 |
|
|
|
| 127 |
|
|
// Constants -- these should be final in a servlet
|
| 128 |
2098
|
jones
|
private static final String PROLOG = "<?xml version=\"1.0\"?>";
|
| 129 |
|
|
private static final String SUCCESS = "<success>";
|
| 130 |
|
|
private static final String SUCCESSCLOSE = "</success>";
|
| 131 |
|
|
private static final String ERROR = "<error>";
|
| 132 |
|
|
private static final String ERRORCLOSE = "</error>";
|
| 133 |
|
|
public static final String SCHEMALOCATIONKEYWORD = ":schemaLocation";
|
| 134 |
|
|
public static final String NONAMESPACELOCATION = ":noNamespaceSchemaLocation";
|
| 135 |
2711
|
sgarg
|
public static final String NAMESPACEKEYWORD = "xmlns";
|
| 136 |
2098
|
jones
|
public static final String EML2KEYWORD = ":eml";
|
| 137 |
|
|
public static final String XMLFORMAT = "xml";
|
| 138 |
|
|
private static final String CONFIG_DIR = "WEB-INF";
|
| 139 |
2752
|
jones
|
private static final String CONFIG_NAME = "metacat.properties";
|
| 140 |
2663
|
sgarg
|
|
| 141 |
2098
|
jones
|
/**
|
| 142 |
|
|
* Initialize the servlet by creating appropriate database connections
|
| 143 |
|
|
*/
|
| 144 |
|
|
public void init(ServletConfig config) throws ServletException
|
| 145 |
|
|
{
|
| 146 |
|
|
try {
|
| 147 |
|
|
super.init(config);
|
| 148 |
2752
|
jones
|
ServletContext context = config.getServletContext();
|
| 149 |
1360
|
tao
|
|
| 150 |
2098
|
jones
|
// Initialize the properties file for our options
|
| 151 |
|
|
String dirPath = context.getRealPath(CONFIG_DIR);
|
| 152 |
|
|
File propertyFile = new File(dirPath, CONFIG_NAME);
|
| 153 |
2594
|
sgarg
|
|
| 154 |
2663
|
sgarg
|
String LOG_CONFIG_NAME = dirPath + "/log4j.properties";
|
| 155 |
|
|
PropertyConfigurator.configureAndWatch(LOG_CONFIG_NAME);
|
| 156 |
|
|
|
| 157 |
2098
|
jones
|
Options options = null;
|
| 158 |
|
|
try {
|
| 159 |
|
|
options = Options.initialize(propertyFile);
|
| 160 |
2663
|
sgarg
|
MetaCatUtil.printMessage("Options configured: "
|
| 161 |
|
|
+ options.getOption("configured"));
|
| 162 |
2098
|
jones
|
} catch (IOException ioe) {
|
| 163 |
2753
|
jones
|
Logger logMetacat = Logger.getLogger(MetaCatServlet.class);
|
| 164 |
2663
|
sgarg
|
logMetacat.error("Error in loading options: "
|
| 165 |
|
|
+ ioe.getMessage());
|
| 166 |
2098
|
jones
|
}
|
| 167 |
1716
|
berkley
|
|
| 168 |
2752
|
jones
|
MetaCatUtil util = new MetaCatUtil();
|
| 169 |
2893
|
sgarg
|
|
| 170 |
2752
|
jones
|
//initialize DBConnection pool
|
| 171 |
|
|
DBConnectionPool connPool = DBConnectionPool.getInstance();
|
| 172 |
|
|
|
| 173 |
2521
|
sgarg
|
// Index the paths specified in the metacat.properties
|
| 174 |
|
|
checkIndexPaths();
|
| 175 |
|
|
|
| 176 |
2729
|
sgarg
|
// initiate the indexing Queue
|
| 177 |
|
|
IndexingQueue.getInstance();
|
| 178 |
|
|
|
| 179 |
|
|
// start the IndexingThread if indexingTimerTaskTime more than 0.
|
| 180 |
|
|
// It will index all the documents not yet indexed in the database
|
| 181 |
|
|
int indexingTimerTaskTime = Integer.parseInt(MetaCatUtil.getOption("indexingTimerTaskTime"));
|
| 182 |
|
|
if(indexingTimerTaskTime > 0){
|
| 183 |
|
|
timer = new Timer();
|
| 184 |
|
|
timer.schedule(new IndexingTimerTask(), 0, indexingTimerTaskTime);
|
| 185 |
|
|
}
|
| 186 |
|
|
|
| 187 |
2893
|
sgarg
|
// read the config files:
|
| 188 |
|
|
Vector skins = MetaCatUtil.getOptionList(MetaCatUtil.getOption("skinconfigfiles"));
|
| 189 |
|
|
String skinName, skinDirPath = null;
|
| 190 |
|
|
File skinPropertyFile = null;
|
| 191 |
|
|
|
| 192 |
|
|
for (int i = 0; i < skins.size(); i++) {
|
| 193 |
|
|
skinName = (String) skins.elementAt(i);
|
| 194 |
|
|
skinDirPath = context.getRealPath(CONFIG_DIR + "/skin.configs/" + skinName);
|
| 195 |
2897
|
sgarg
|
skinPropertyFile = new File(skinDirPath, skinName + ".properties");
|
| 196 |
2896
|
sgarg
|
Properties skinOption = null;
|
| 197 |
2893
|
sgarg
|
try {
|
| 198 |
2896
|
sgarg
|
skinOption = new Properties();
|
| 199 |
|
|
FileInputStream fis = new FileInputStream(skinPropertyFile);
|
| 200 |
|
|
skinOption.load(fis);
|
| 201 |
|
|
fis.close();
|
| 202 |
2893
|
sgarg
|
} catch (IOException ioe) {
|
| 203 |
|
|
Logger logMetacat = Logger.getLogger(MetaCatServlet.class);
|
| 204 |
|
|
logMetacat.error("Error in loading options for skin " + "skinName" +" : "
|
| 205 |
|
|
+ ioe.getMessage());
|
| 206 |
2896
|
sgarg
|
}
|
| 207 |
2893
|
sgarg
|
MetaCatUtil.skinconfigs.put(skinName, skinOption);
|
| 208 |
|
|
}
|
| 209 |
2946
|
sgarg
|
|
| 210 |
|
|
|
| 211 |
2948
|
sgarg
|
if (MetacatSpatialConstants.runSpatialOption == true ) {
|
| 212 |
2946
|
sgarg
|
|
| 213 |
|
|
// create a spatial index of the database
|
| 214 |
2919
|
harris
|
MetacatSpatialConstants.setServerContext(MetaCatUtil.getOption("server"));
|
| 215 |
2913
|
harris
|
MetacatSpatialQuery _spatialQuery = new MetacatSpatialQuery();
|
| 216 |
2893
|
sgarg
|
|
| 217 |
2913
|
harris
|
// issue the query -- using the geographic bounds of the Earth
|
| 218 |
|
|
MetacatSpatialDataset _data = _spatialQuery.queryDatasetByCartesianBounds(-180, -90, 180, 90);
|
| 219 |
|
|
|
| 220 |
|
|
// write the data to the appropriate theme
|
| 221 |
|
|
_data.writeMetacatSpatialCache();
|
| 222 |
2946
|
sgarg
|
|
| 223 |
|
|
}
|
| 224 |
2913
|
harris
|
|
| 225 |
|
|
|
| 226 |
2663
|
sgarg
|
MetaCatUtil.printMessage("Metacat (" + Version.getVersion()
|
| 227 |
2521
|
sgarg
|
+ ") initialized.");
|
| 228 |
|
|
|
| 229 |
2098
|
jones
|
} catch (ServletException ex) {
|
| 230 |
|
|
throw ex;
|
| 231 |
|
|
} catch (SQLException e) {
|
| 232 |
2753
|
jones
|
Logger logMetacat = Logger.getLogger(MetaCatServlet.class);
|
| 233 |
2663
|
sgarg
|
logMetacat.error("Error in MetacatServlet.init: "
|
| 234 |
|
|
+ e.getMessage());
|
| 235 |
1221
|
tao
|
}
|
| 236 |
2098
|
jones
|
}
|
| 237 |
1360
|
tao
|
|
| 238 |
2570
|
jones
|
/**
|
| 239 |
|
|
* Close all db connections from the pool
|
| 240 |
|
|
*/
|
| 241 |
|
|
public void destroy()
|
| 242 |
|
|
{
|
| 243 |
|
|
// Close all db connection
|
| 244 |
|
|
System.out.println("Destroying MetacatServlet");
|
| 245 |
2759
|
sgarg
|
timer.cancel();
|
| 246 |
2901
|
sgarg
|
IndexingQueue.getInstance().setMetacatRunning(false);
|
| 247 |
2570
|
jones
|
DBConnectionPool.release();
|
| 248 |
|
|
}
|
| 249 |
2521
|
sgarg
|
|
| 250 |
2570
|
jones
|
/** Handle "GET" method requests from HTTP clients */
|
| 251 |
|
|
public void doGet(HttpServletRequest request, HttpServletResponse response)
|
| 252 |
|
|
throws ServletException, IOException
|
| 253 |
|
|
{
|
| 254 |
|
|
|
| 255 |
|
|
// Process the data and send back the response
|
| 256 |
|
|
handleGetOrPost(request, response);
|
| 257 |
|
|
}
|
| 258 |
|
|
|
| 259 |
|
|
/** Handle "POST" method requests from HTTP clients */
|
| 260 |
|
|
public void doPost(HttpServletRequest request, HttpServletResponse response)
|
| 261 |
|
|
throws ServletException, IOException
|
| 262 |
|
|
{
|
| 263 |
|
|
|
| 264 |
|
|
// Process the data and send back the response
|
| 265 |
|
|
handleGetOrPost(request, response);
|
| 266 |
|
|
}
|
| 267 |
|
|
|
| 268 |
2098
|
jones
|
/**
|
| 269 |
2521
|
sgarg
|
* Index the paths specified in the metacat.properties
|
| 270 |
|
|
*/
|
| 271 |
2753
|
jones
|
private void checkIndexPaths() {
|
| 272 |
|
|
Logger logMetacat = Logger.getLogger(MetaCatServlet.class);
|
| 273 |
2521
|
sgarg
|
MetaCatUtil.pathsForIndexing
|
| 274 |
2758
|
sgarg
|
= MetaCatUtil.getOptionList(MetaCatUtil.getOption("indexPaths"));
|
| 275 |
2570
|
jones
|
|
| 276 |
2521
|
sgarg
|
if (MetaCatUtil.pathsForIndexing != null) {
|
| 277 |
2570
|
jones
|
|
| 278 |
2663
|
sgarg
|
MetaCatUtil.printMessage("Indexing paths specified in metacat.properties....");
|
| 279 |
2570
|
jones
|
|
| 280 |
2521
|
sgarg
|
DBConnection conn = null;
|
| 281 |
|
|
int serialNumber = -1;
|
| 282 |
|
|
PreparedStatement pstmt = null;
|
| 283 |
|
|
PreparedStatement pstmt1 = null;
|
| 284 |
|
|
ResultSet rs = null;
|
| 285 |
2570
|
jones
|
|
| 286 |
2521
|
sgarg
|
for (int i = 0; i < MetaCatUtil.pathsForIndexing.size(); i++) {
|
| 287 |
2753
|
jones
|
logMetacat.debug("Checking if '"
|
| 288 |
2521
|
sgarg
|
+ (String) MetaCatUtil.pathsForIndexing.elementAt(i)
|
| 289 |
2663
|
sgarg
|
+ "' is indexed.... ");
|
| 290 |
2570
|
jones
|
|
| 291 |
2521
|
sgarg
|
try {
|
| 292 |
|
|
//check out DBConnection
|
| 293 |
|
|
conn = DBConnectionPool.
|
| 294 |
|
|
getDBConnection("MetaCatServlet.checkIndexPaths");
|
| 295 |
|
|
serialNumber = conn.getCheckOutSerialNumber();
|
| 296 |
2570
|
jones
|
|
| 297 |
2521
|
sgarg
|
pstmt = conn.prepareStatement(
|
| 298 |
|
|
"SELECT * FROM xml_path_index " + "WHERE path = ?");
|
| 299 |
|
|
pstmt.setString(1, (String) MetaCatUtil.pathsForIndexing
|
| 300 |
|
|
.elementAt(i));
|
| 301 |
2570
|
jones
|
|
| 302 |
2521
|
sgarg
|
pstmt.execute();
|
| 303 |
|
|
rs = pstmt.getResultSet();
|
| 304 |
2570
|
jones
|
|
| 305 |
2521
|
sgarg
|
if (!rs.next()) {
|
| 306 |
2753
|
jones
|
logMetacat.debug(".....not indexed yet.");
|
| 307 |
2521
|
sgarg
|
rs.close();
|
| 308 |
|
|
pstmt.close();
|
| 309 |
|
|
conn.increaseUsageCount(1);
|
| 310 |
2570
|
jones
|
|
| 311 |
2663
|
sgarg
|
logMetacat.debug(
|
| 312 |
2521
|
sgarg
|
"Inserting following path in xml_path_index: "
|
| 313 |
|
|
+ (String)MetaCatUtil.pathsForIndexing
|
| 314 |
2663
|
sgarg
|
.elementAt(i));
|
| 315 |
2836
|
sgarg
|
if(((String)MetaCatUtil.pathsForIndexing.elementAt(i)).indexOf("@")<0){
|
| 316 |
|
|
pstmt = conn.prepareStatement("SELECT DISTINCT n.docid, "
|
| 317 |
|
|
+ "n.nodedata, n.nodedatanumerical, n.parentnodeid"
|
| 318 |
|
|
+ " FROM xml_nodes n, xml_index i WHERE"
|
| 319 |
|
|
+ " i.path = ? and n.parentnodeid=i.nodeid and"
|
| 320 |
|
|
+ " n.nodetype LIKE 'TEXT' order by n.parentnodeid");
|
| 321 |
|
|
} else {
|
| 322 |
|
|
pstmt = conn.prepareStatement("SELECT DISTINCT n.docid, "
|
| 323 |
|
|
+ "n.nodedata, n.nodedatanumerical, n.parentnodeid"
|
| 324 |
|
|
+ " FROM xml_nodes n, xml_index i WHERE"
|
| 325 |
|
|
+ " i.path = ? and n.nodeid=i.nodeid and"
|
| 326 |
|
|
+ " n.nodetype LIKE 'ATTRIBUTE' order by n.parentnodeid");
|
| 327 |
|
|
}
|
| 328 |
2521
|
sgarg
|
pstmt.setString(1, (String) MetaCatUtil.
|
| 329 |
|
|
pathsForIndexing.elementAt(i));
|
| 330 |
|
|
pstmt.execute();
|
| 331 |
|
|
rs = pstmt.getResultSet();
|
| 332 |
2570
|
jones
|
|
| 333 |
2521
|
sgarg
|
int count = 0;
|
| 334 |
2663
|
sgarg
|
logMetacat.debug(
|
| 335 |
2521
|
sgarg
|
"Executed the select statement for: "
|
| 336 |
|
|
+ (String) MetaCatUtil.pathsForIndexing
|
| 337 |
2663
|
sgarg
|
.elementAt(i));
|
| 338 |
2570
|
jones
|
|
| 339 |
2521
|
sgarg
|
try {
|
| 340 |
|
|
while (rs.next()) {
|
| 341 |
2570
|
jones
|
|
| 342 |
2521
|
sgarg
|
String docid = rs.getString(1);
|
| 343 |
|
|
String nodedata = rs.getString(2);
|
| 344 |
|
|
float nodedatanumerical = rs.getFloat(3);
|
| 345 |
|
|
int parentnodeid = rs.getInt(4);
|
| 346 |
2570
|
jones
|
|
| 347 |
2521
|
sgarg
|
if (!nodedata.trim().equals("")) {
|
| 348 |
|
|
pstmt1 = conn.prepareStatement(
|
| 349 |
|
|
"INSERT INTO xml_path_index"
|
| 350 |
|
|
+ " (docid, path, nodedata, "
|
| 351 |
|
|
+ "nodedatanumerical, parentnodeid)"
|
| 352 |
|
|
+ " VALUES (?, ?, ?, ?, ?)");
|
| 353 |
2570
|
jones
|
|
| 354 |
2521
|
sgarg
|
pstmt1.setString(1, docid);
|
| 355 |
|
|
pstmt1.setString(2, (String) MetaCatUtil.
|
| 356 |
|
|
pathsForIndexing.elementAt(i));
|
| 357 |
|
|
pstmt1.setString(3, nodedata);
|
| 358 |
|
|
pstmt1.setFloat(4, nodedatanumerical);
|
| 359 |
2701
|
sgarg
|
pstmt1.setInt(5, parentnodeid);
|
| 360 |
2570
|
jones
|
|
| 361 |
2521
|
sgarg
|
pstmt1.execute();
|
| 362 |
|
|
pstmt1.close();
|
| 363 |
2570
|
jones
|
|
| 364 |
2521
|
sgarg
|
count++;
|
| 365 |
2570
|
jones
|
|
| 366 |
2521
|
sgarg
|
}
|
| 367 |
|
|
}
|
| 368 |
|
|
}
|
| 369 |
|
|
catch (Exception e) {
|
| 370 |
|
|
System.out.println("Exception:" + e.getMessage());
|
| 371 |
|
|
e.printStackTrace();
|
| 372 |
|
|
}
|
| 373 |
2570
|
jones
|
|
| 374 |
2521
|
sgarg
|
rs.close();
|
| 375 |
|
|
pstmt.close();
|
| 376 |
|
|
conn.increaseUsageCount(1);
|
| 377 |
2570
|
jones
|
|
| 378 |
2753
|
jones
|
logMetacat.info("Indexed " + count
|
| 379 |
2521
|
sgarg
|
+ " records from xml_nodes for '"
|
| 380 |
|
|
+ (String) MetaCatUtil.pathsForIndexing.elementAt(i)
|
| 381 |
2663
|
sgarg
|
+ "'");
|
| 382 |
2570
|
jones
|
|
| 383 |
2521
|
sgarg
|
} else {
|
| 384 |
2753
|
jones
|
logMetacat.debug(".....already indexed.");
|
| 385 |
2521
|
sgarg
|
}
|
| 386 |
2570
|
jones
|
|
| 387 |
2521
|
sgarg
|
rs.close();
|
| 388 |
|
|
pstmt.close();
|
| 389 |
|
|
conn.increaseUsageCount(1);
|
| 390 |
2570
|
jones
|
|
| 391 |
2521
|
sgarg
|
} catch (Exception e) {
|
| 392 |
2663
|
sgarg
|
logMetacat.error("Error in MetaCatServlet.checkIndexPaths: "
|
| 393 |
|
|
+ e.getMessage());
|
| 394 |
2521
|
sgarg
|
}finally {
|
| 395 |
|
|
//check in DBonnection
|
| 396 |
|
|
DBConnectionPool.returnDBConnection(conn, serialNumber);
|
| 397 |
|
|
}
|
| 398 |
2570
|
jones
|
|
| 399 |
|
|
|
| 400 |
2521
|
sgarg
|
}
|
| 401 |
2570
|
jones
|
|
| 402 |
2663
|
sgarg
|
MetaCatUtil.printMessage("Path Indexing Completed");
|
| 403 |
2521
|
sgarg
|
}
|
| 404 |
2682
|
sgarg
|
}
|
| 405 |
1723
|
berkley
|
|
| 406 |
2098
|
jones
|
/**
|
| 407 |
|
|
* Control servlet response depending on the action parameter specified
|
| 408 |
|
|
*/
|
| 409 |
|
|
private void handleGetOrPost(HttpServletRequest request,
|
| 410 |
|
|
HttpServletResponse response) throws ServletException, IOException
|
| 411 |
2045
|
tao
|
{
|
| 412 |
2752
|
jones
|
MetaCatUtil util = new MetaCatUtil();
|
| 413 |
2753
|
jones
|
Logger logMetacat = Logger.getLogger(MetaCatServlet.class);
|
| 414 |
|
|
|
| 415 |
2098
|
jones
|
/*
|
| 416 |
2753
|
jones
|
* logMetacat.debug("Connection pool size: "
|
| 417 |
2098
|
jones
|
* +connPool.getSizeOfDBConnectionPool(),10);
|
| 418 |
2753
|
jones
|
* logMetacat.debug("Free DBConnection number: "
|
| 419 |
2098
|
jones
|
*/
|
| 420 |
|
|
//If all DBConnection in the pool are free and DBConnection pool
|
| 421 |
|
|
//size is greater than initial value, shrink the connection pool
|
| 422 |
|
|
//size to initial value
|
| 423 |
|
|
DBConnectionPool.shrinkDBConnectionPoolSize();
|
| 424 |
1360
|
tao
|
|
| 425 |
2098
|
jones
|
//Debug message to print out the method which have a busy DBConnection
|
| 426 |
2752
|
jones
|
try {
|
| 427 |
|
|
DBConnectionPool pool = DBConnectionPool.getInstance();
|
| 428 |
|
|
pool.printMethodNameHavingBusyDBConnection();
|
| 429 |
|
|
} catch (SQLException e) {
|
| 430 |
|
|
logMetacat.error("Error in MetacatServlet.handleGetOrPost: "
|
| 431 |
|
|
+ e.getMessage());
|
| 432 |
|
|
e.printStackTrace();
|
| 433 |
|
|
}
|
| 434 |
1360
|
tao
|
|
| 435 |
2098
|
jones
|
String ctype = request.getContentType();
|
| 436 |
|
|
if (ctype != null && ctype.startsWith("multipart/form-data")) {
|
| 437 |
|
|
handleMultipartForm(request, response);
|
| 438 |
|
|
} else {
|
| 439 |
1360
|
tao
|
|
| 440 |
2098
|
jones
|
String name = null;
|
| 441 |
|
|
String[] value = null;
|
| 442 |
|
|
String[] docid = new String[3];
|
| 443 |
|
|
Hashtable params = new Hashtable();
|
| 444 |
|
|
Enumeration paramlist = request.getParameterNames();
|
| 445 |
1360
|
tao
|
|
| 446 |
2098
|
jones
|
while (paramlist.hasMoreElements()) {
|
| 447 |
1360
|
tao
|
|
| 448 |
2098
|
jones
|
name = (String) paramlist.nextElement();
|
| 449 |
|
|
value = request.getParameterValues(name);
|
| 450 |
509
|
bojilova
|
|
| 451 |
2098
|
jones
|
// Decode the docid and mouse click information
|
| 452 |
|
|
if (name.endsWith(".y")) {
|
| 453 |
|
|
docid[0] = name.substring(0, name.length() - 2);
|
| 454 |
|
|
params.put("docid", docid);
|
| 455 |
|
|
name = "ypos";
|
| 456 |
|
|
}
|
| 457 |
|
|
if (name.endsWith(".x")) {
|
| 458 |
|
|
name = "xpos";
|
| 459 |
|
|
}
|
| 460 |
509
|
bojilova
|
|
| 461 |
2098
|
jones
|
params.put(name, value);
|
| 462 |
|
|
}
|
| 463 |
509
|
bojilova
|
|
| 464 |
2098
|
jones
|
//handle param is emptpy
|
| 465 |
|
|
if (params.isEmpty() || params == null) { return; }
|
| 466 |
509
|
bojilova
|
|
| 467 |
2098
|
jones
|
//if the user clicked on the input images, decode which image
|
| 468 |
|
|
//was clicked then set the action.
|
| 469 |
2252
|
sgarg
|
if(params.get("action") == null){
|
| 470 |
|
|
PrintWriter out = response.getWriter();
|
| 471 |
|
|
response.setContentType("text/xml");
|
| 472 |
|
|
out.println("<?xml version=\"1.0\"?>");
|
| 473 |
|
|
out.println("<error>");
|
| 474 |
|
|
out.println("Action not specified");
|
| 475 |
|
|
out.println("</error>");
|
| 476 |
|
|
out.close();
|
| 477 |
|
|
return;
|
| 478 |
|
|
}
|
| 479 |
|
|
|
| 480 |
2098
|
jones
|
String action = ((String[]) params.get("action"))[0];
|
| 481 |
2753
|
jones
|
logMetacat.info("Action is: " + action);
|
| 482 |
509
|
bojilova
|
|
| 483 |
2098
|
jones
|
// This block handles session management for the servlet
|
| 484 |
|
|
// by looking up the current session information for all actions
|
| 485 |
|
|
// other than "login" and "logout"
|
| 486 |
|
|
String username = null;
|
| 487 |
|
|
String password = null;
|
| 488 |
|
|
String[] groupnames = null;
|
| 489 |
|
|
String sess_id = null;
|
| 490 |
2682
|
sgarg
|
name = null;
|
| 491 |
|
|
|
| 492 |
2098
|
jones
|
// handle login action
|
| 493 |
|
|
if (action.equals("login")) {
|
| 494 |
|
|
PrintWriter out = response.getWriter();
|
| 495 |
|
|
handleLoginAction(out, params, request, response);
|
| 496 |
|
|
out.close();
|
| 497 |
2912
|
harris
|
|
| 498 |
2098
|
jones
|
// handle logout action
|
| 499 |
2919
|
harris
|
} else if (action.equals("logout")) {
|
| 500 |
2098
|
jones
|
PrintWriter out = response.getWriter();
|
| 501 |
|
|
handleLogoutAction(out, params, request, response);
|
| 502 |
|
|
out.close();
|
| 503 |
1360
|
tao
|
|
| 504 |
2098
|
jones
|
// handle shrink DBConnection request
|
| 505 |
|
|
} else if (action.equals("shrink")) {
|
| 506 |
|
|
PrintWriter out = response.getWriter();
|
| 507 |
|
|
boolean success = false;
|
| 508 |
|
|
//If all DBConnection in the pool are free and DBConnection
|
| 509 |
|
|
// pool
|
| 510 |
|
|
//size is greater than initial value, shrink the connection
|
| 511 |
|
|
// pool
|
| 512 |
|
|
//size to initial value
|
| 513 |
|
|
success = DBConnectionPool.shrinkConnectionPoolSize();
|
| 514 |
|
|
if (success) {
|
| 515 |
|
|
//if successfully shrink the pool size to initial value
|
| 516 |
|
|
out.println("DBConnection Pool shrunk successfully.");
|
| 517 |
|
|
}//if
|
| 518 |
|
|
else {
|
| 519 |
|
|
out.println("DBConnection pool not shrunk successfully.");
|
| 520 |
|
|
}
|
| 521 |
|
|
//close out put
|
| 522 |
|
|
out.close();
|
| 523 |
1360
|
tao
|
|
| 524 |
2098
|
jones
|
// aware of session expiration on every request
|
| 525 |
|
|
} else {
|
| 526 |
|
|
HttpSession sess = request.getSession(true);
|
| 527 |
|
|
if (sess.isNew() && !params.containsKey("sessionid")) {
|
| 528 |
|
|
// session expired or has not been stored b/w user requests
|
| 529 |
2753
|
jones
|
logMetacat.info(
|
| 530 |
2663
|
sgarg
|
"The session is new or no sessionid is assigned. The user is public");
|
| 531 |
2098
|
jones
|
username = "public";
|
| 532 |
|
|
sess.setAttribute("username", username);
|
| 533 |
|
|
} else {
|
| 534 |
2753
|
jones
|
logMetacat.info("The session is either old or "
|
| 535 |
2668
|
sgarg
|
+ "has sessionid parameter");
|
| 536 |
2098
|
jones
|
try {
|
| 537 |
|
|
if (params.containsKey("sessionid")) {
|
| 538 |
|
|
sess_id = ((String[]) params.get("sessionid"))[0];
|
| 539 |
2663
|
sgarg
|
logMetacat.info("in has sessionid "
|
| 540 |
|
|
+ sess_id);
|
| 541 |
2098
|
jones
|
if (sessionHash.containsKey(sess_id)) {
|
| 542 |
2663
|
sgarg
|
logMetacat.info("find the id "
|
| 543 |
|
|
+ sess_id + " in hash table");
|
| 544 |
2098
|
jones
|
sess = (HttpSession) sessionHash.get(sess_id);
|
| 545 |
|
|
}
|
| 546 |
|
|
} else {
|
| 547 |
|
|
// we already store the session in login, so we
|
| 548 |
|
|
// don't need here
|
| 549 |
|
|
/*
|
| 550 |
2663
|
sgarg
|
* logMetacat.info("in no sessionid
|
| 551 |
2098
|
jones
|
* parameter ", 40); sess_id =
|
| 552 |
|
|
* (String)sess.getId();
|
| 553 |
2663
|
sgarg
|
* logMetacat.info("storing the session id "
|
| 554 |
2098
|
jones
|
* + sess_id + " which has username " +
|
| 555 |
|
|
* sess.getAttribute("username") + " into session
|
| 556 |
|
|
* hash in handleGetOrPost method", 35);
|
| 557 |
|
|
*/
|
| 558 |
|
|
}
|
| 559 |
|
|
} catch (IllegalStateException ise) {
|
| 560 |
2663
|
sgarg
|
logMetacat.error(
|
| 561 |
|
|
"Error in handleGetOrPost: this shouldn't "
|
| 562 |
2098
|
jones
|
+ "happen: the session should be valid: "
|
| 563 |
|
|
+ ise.getMessage());
|
| 564 |
|
|
}
|
| 565 |
1360
|
tao
|
|
| 566 |
2098
|
jones
|
username = (String) sess.getAttribute("username");
|
| 567 |
2668
|
sgarg
|
logMetacat.info("The user name from session is: "
|
| 568 |
2663
|
sgarg
|
+ username);
|
| 569 |
2098
|
jones
|
password = (String) sess.getAttribute("password");
|
| 570 |
|
|
groupnames = (String[]) sess.getAttribute("groupnames");
|
| 571 |
2682
|
sgarg
|
name = (String) sess.getAttribute("name");
|
| 572 |
2098
|
jones
|
}
|
| 573 |
1360
|
tao
|
|
| 574 |
2098
|
jones
|
//make user user username should be public
|
| 575 |
|
|
if (username == null || (username.trim().equals(""))) {
|
| 576 |
|
|
username = "public";
|
| 577 |
|
|
}
|
| 578 |
2753
|
jones
|
logMetacat.info("The user is : " + username);
|
| 579 |
2098
|
jones
|
}
|
| 580 |
|
|
// Now that we know the session is valid, we can delegate the
|
| 581 |
|
|
// request
|
| 582 |
|
|
// to a particular action handler
|
| 583 |
|
|
if (action.equals("query")) {
|
| 584 |
|
|
PrintWriter out = response.getWriter();
|
| 585 |
|
|
handleQuery(out, params, response, username, groupnames,
|
| 586 |
|
|
sess_id);
|
| 587 |
|
|
out.close();
|
| 588 |
|
|
} else if (action.equals("squery")) {
|
| 589 |
|
|
PrintWriter out = response.getWriter();
|
| 590 |
|
|
if (params.containsKey("query")) {
|
| 591 |
|
|
handleSQuery(out, params, response, username, groupnames,
|
| 592 |
|
|
sess_id);
|
| 593 |
|
|
out.close();
|
| 594 |
|
|
} else {
|
| 595 |
|
|
out.println(
|
| 596 |
|
|
"Illegal action squery without \"query\" parameter");
|
| 597 |
|
|
out.close();
|
| 598 |
|
|
}
|
| 599 |
2919
|
harris
|
} else if ( action.trim().equals("spatial_query")) {
|
| 600 |
|
|
|
| 601 |
2970
|
sgarg
|
logMetacat.debug("******************* SPATIAL QUERY ********************");
|
| 602 |
2919
|
harris
|
PrintWriter out = response.getWriter();
|
| 603 |
|
|
handleSpatialQuery(out, params, response, username, groupnames, sess_id);
|
| 604 |
|
|
out.close();
|
| 605 |
|
|
|
| 606 |
2098
|
jones
|
} else if (action.equals("export")) {
|
| 607 |
1298
|
tao
|
|
| 608 |
2169
|
sgarg
|
handleExportAction(params, response, username,
|
| 609 |
2102
|
jones
|
groupnames, password);
|
| 610 |
2098
|
jones
|
} else if (action.equals("read")) {
|
| 611 |
2102
|
jones
|
handleReadAction(params, request, response, username, password,
|
| 612 |
2098
|
jones
|
groupnames);
|
| 613 |
|
|
} else if (action.equals("readinlinedata")) {
|
| 614 |
2102
|
jones
|
handleReadInlineDataAction(params, request, response, username,
|
| 615 |
2098
|
jones
|
password, groupnames);
|
| 616 |
|
|
} else if (action.equals("insert") || action.equals("update")) {
|
| 617 |
|
|
PrintWriter out = response.getWriter();
|
| 618 |
|
|
if ((username != null) && !username.equals("public")) {
|
| 619 |
2102
|
jones
|
handleInsertOrUpdateAction(request, response,
|
| 620 |
|
|
out, params, username, groupnames);
|
| 621 |
2098
|
jones
|
} else {
|
| 622 |
2252
|
sgarg
|
response.setContentType("text/xml");
|
| 623 |
|
|
out.println("<?xml version=\"1.0\"?>");
|
| 624 |
|
|
out.println("<error>");
|
| 625 |
2098
|
jones
|
out.println("Permission denied for user " + username + " "
|
| 626 |
|
|
+ action);
|
| 627 |
2252
|
sgarg
|
out.println("</error>");
|
| 628 |
2098
|
jones
|
}
|
| 629 |
|
|
out.close();
|
| 630 |
|
|
} else if (action.equals("delete")) {
|
| 631 |
|
|
PrintWriter out = response.getWriter();
|
| 632 |
|
|
if ((username != null) && !username.equals("public")) {
|
| 633 |
2102
|
jones
|
handleDeleteAction(out, params, request, response, username,
|
| 634 |
2098
|
jones
|
groupnames);
|
| 635 |
|
|
} else {
|
| 636 |
2252
|
sgarg
|
response.setContentType("text/xml");
|
| 637 |
|
|
out.println("<?xml version=\"1.0\"?>");
|
| 638 |
|
|
out.println("<error>");
|
| 639 |
2098
|
jones
|
out.println("Permission denied for " + action);
|
| 640 |
2252
|
sgarg
|
out.println("</error>");
|
| 641 |
2098
|
jones
|
}
|
| 642 |
|
|
out.close();
|
| 643 |
|
|
} else if (action.equals("validate")) {
|
| 644 |
|
|
PrintWriter out = response.getWriter();
|
| 645 |
|
|
handleValidateAction(out, params);
|
| 646 |
|
|
out.close();
|
| 647 |
|
|
} else if (action.equals("setaccess")) {
|
| 648 |
|
|
PrintWriter out = response.getWriter();
|
| 649 |
|
|
handleSetAccessAction(out, params, username);
|
| 650 |
|
|
out.close();
|
| 651 |
|
|
} else if (action.equals("getaccesscontrol")) {
|
| 652 |
|
|
PrintWriter out = response.getWriter();
|
| 653 |
|
|
handleGetAccessControlAction(out, params, response, username,
|
| 654 |
|
|
groupnames);
|
| 655 |
|
|
out.close();
|
| 656 |
|
|
} else if (action.equals("getprincipals")) {
|
| 657 |
|
|
PrintWriter out = response.getWriter();
|
| 658 |
|
|
handleGetPrincipalsAction(out, username, password);
|
| 659 |
|
|
out.close();
|
| 660 |
|
|
} else if (action.equals("getdoctypes")) {
|
| 661 |
|
|
PrintWriter out = response.getWriter();
|
| 662 |
|
|
handleGetDoctypesAction(out, params, response);
|
| 663 |
|
|
out.close();
|
| 664 |
|
|
} else if (action.equals("getdtdschema")) {
|
| 665 |
|
|
PrintWriter out = response.getWriter();
|
| 666 |
|
|
handleGetDTDSchemaAction(out, params, response);
|
| 667 |
|
|
out.close();
|
| 668 |
|
|
} else if (action.equals("getlastdocid")) {
|
| 669 |
|
|
PrintWriter out = response.getWriter();
|
| 670 |
|
|
handleGetMaxDocidAction(out, params, response);
|
| 671 |
|
|
out.close();
|
| 672 |
|
|
} else if (action.equals("getrevisionanddoctype")) {
|
| 673 |
|
|
PrintWriter out = response.getWriter();
|
| 674 |
|
|
handleGetRevisionAndDocTypeAction(out, params);
|
| 675 |
|
|
out.close();
|
| 676 |
|
|
} else if (action.equals("getversion")) {
|
| 677 |
|
|
response.setContentType("text/xml");
|
| 678 |
|
|
PrintWriter out = response.getWriter();
|
| 679 |
|
|
out.println(Version.getVersionAsXml());
|
| 680 |
|
|
out.close();
|
| 681 |
2113
|
jones
|
} else if (action.equals("getlog")) {
|
| 682 |
2558
|
sgarg
|
handleGetLogAction(params, request, response, username, groupnames);
|
| 683 |
2682
|
sgarg
|
} else if (action.equals("getloggedinuserinfo")) {
|
| 684 |
|
|
PrintWriter out = response.getWriter();
|
| 685 |
|
|
response.setContentType("text/xml");
|
| 686 |
|
|
out.println("<?xml version=\"1.0\"?>");
|
| 687 |
|
|
out.println("\n<user>\n");
|
| 688 |
|
|
out.println("\n<username>\n");
|
| 689 |
|
|
out.println(username);
|
| 690 |
|
|
out.println("\n</username>\n");
|
| 691 |
|
|
if(name!=null){
|
| 692 |
|
|
out.println("\n<name>\n");
|
| 693 |
|
|
out.println(name);
|
| 694 |
|
|
out.println("\n</name>\n");
|
| 695 |
|
|
}
|
| 696 |
|
|
if(MetaCatUtil.isAdministrator(username, groupnames)){
|
| 697 |
|
|
out.println("<isAdministrator></isAdministrator>\n");
|
| 698 |
|
|
}
|
| 699 |
|
|
if(MetaCatUtil.isModerator(username, groupnames)){
|
| 700 |
|
|
out.println("<isModerator></isModerator>\n");
|
| 701 |
|
|
}
|
| 702 |
|
|
out.println("\n</user>\n");
|
| 703 |
|
|
out.close();
|
| 704 |
2312
|
jones
|
} else if (action.equals("buildindex")) {
|
| 705 |
2558
|
sgarg
|
handleBuildIndexAction(params, request, response, username, groupnames);
|
| 706 |
2098
|
jones
|
} else if (action.equals("login") || action.equals("logout")) {
|
| 707 |
2312
|
jones
|
/*
|
| 708 |
2098
|
jones
|
} else if (action.equals("protocoltest")) {
|
| 709 |
|
|
String testURL = "metacat://dev.nceas.ucsb.edu/NCEAS.897766.9";
|
| 710 |
|
|
try {
|
| 711 |
|
|
testURL = ((String[]) params.get("url"))[0];
|
| 712 |
|
|
} catch (Throwable t) {
|
| 713 |
|
|
}
|
| 714 |
|
|
String phandler = System
|
| 715 |
|
|
.getProperty("java.protocol.handler.pkgs");
|
| 716 |
|
|
response.setContentType("text/html");
|
| 717 |
|
|
PrintWriter out = response.getWriter();
|
| 718 |
|
|
out.println("<body bgcolor=\"white\">");
|
| 719 |
|
|
out.println("<p>Handler property: <code>" + phandler
|
| 720 |
|
|
+ "</code></p>");
|
| 721 |
|
|
out.println("<p>Starting test for:<br>");
|
| 722 |
|
|
out.println(" " + testURL + "</p>");
|
| 723 |
|
|
try {
|
| 724 |
|
|
URL u = new URL(testURL);
|
| 725 |
|
|
out.println("<pre>");
|
| 726 |
|
|
out.println("Protocol: " + u.getProtocol());
|
| 727 |
|
|
out.println(" Host: " + u.getHost());
|
| 728 |
|
|
out.println(" Port: " + u.getPort());
|
| 729 |
|
|
out.println(" Path: " + u.getPath());
|
| 730 |
|
|
out.println(" Ref: " + u.getRef());
|
| 731 |
|
|
String pquery = u.getQuery();
|
| 732 |
|
|
out.println(" Query: " + pquery);
|
| 733 |
|
|
out.println(" Params: ");
|
| 734 |
|
|
if (pquery != null) {
|
| 735 |
2099
|
jones
|
Hashtable qparams = MetaCatUtil.parseQuery(u.getQuery());
|
| 736 |
2098
|
jones
|
for (Enumeration en = qparams.keys(); en
|
| 737 |
|
|
.hasMoreElements();) {
|
| 738 |
|
|
String pname = (String) en.nextElement();
|
| 739 |
|
|
String pvalue = (String) qparams.get(pname);
|
| 740 |
|
|
out.println(" " + pname + ": " + pvalue);
|
| 741 |
|
|
}
|
| 742 |
|
|
}
|
| 743 |
|
|
out.println("</pre>");
|
| 744 |
|
|
out.println("</body>");
|
| 745 |
|
|
out.close();
|
| 746 |
|
|
} catch (MalformedURLException mue) {
|
| 747 |
|
|
System.out.println(
|
| 748 |
|
|
"bad url from MetacatServlet.handleGetOrPost");
|
| 749 |
|
|
out.println(mue.getMessage());
|
| 750 |
|
|
mue.printStackTrace(out);
|
| 751 |
|
|
out.close();
|
| 752 |
|
|
}
|
| 753 |
2312
|
jones
|
*/
|
| 754 |
2098
|
jones
|
} else {
|
| 755 |
|
|
PrintWriter out = response.getWriter();
|
| 756 |
|
|
out.println("<?xml version=\"1.0\"?>");
|
| 757 |
|
|
out.println("<error>");
|
| 758 |
|
|
out.println(
|
| 759 |
|
|
"Error: action not registered. Please report this error.");
|
| 760 |
|
|
out.println("</error>");
|
| 761 |
|
|
out.close();
|
| 762 |
|
|
}
|
| 763 |
1360
|
tao
|
|
| 764 |
2098
|
jones
|
//util.closeConnections();
|
| 765 |
|
|
// Close the stream to the client
|
| 766 |
|
|
//out.close();
|
| 767 |
|
|
}
|
| 768 |
|
|
}
|
| 769 |
425
|
bojilova
|
|
| 770 |
2912
|
harris
|
/////////////////////////////// METACAT SPATIAL ///////////////////////////
|
| 771 |
|
|
|
| 772 |
|
|
/**
|
| 773 |
|
|
* handles all spatial queries -- these queries may include any of the
|
| 774 |
|
|
* queries supported by the WFS / WMS standards
|
| 775 |
2938
|
harris
|
*
|
| 776 |
|
|
* handleSQuery(out, params, response, username, groupnames,
|
| 777 |
|
|
* sess_id);
|
| 778 |
2912
|
harris
|
*/
|
| 779 |
2919
|
harris
|
private void handleSpatialQuery(PrintWriter out, Hashtable params,
|
| 780 |
|
|
HttpServletResponse response,
|
| 781 |
|
|
String username, String[] groupnames,
|
| 782 |
|
|
String sess_id) {
|
| 783 |
|
|
|
| 784 |
2912
|
harris
|
Logger logMetacat = Logger.getLogger(MetaCatServlet.class);
|
| 785 |
2970
|
sgarg
|
//MBJDELETED MetacatSpatialQuery _spatialQuery = new MetacatSpatialQuery();
|
| 786 |
2946
|
sgarg
|
|
| 787 |
2948
|
sgarg
|
if (MetacatSpatialConstants.runSpatialOption == false ) {
|
| 788 |
2946
|
sgarg
|
response.setContentType("text/html");
|
| 789 |
|
|
out.println("<html> Metacat Spatial Option is turned off <html>");
|
| 790 |
|
|
out.close();
|
| 791 |
|
|
return ;
|
| 792 |
|
|
}
|
| 793 |
|
|
|
| 794 |
2912
|
harris
|
MetacatSpatialQuery _spatialQuery = new MetacatSpatialQuery();
|
| 795 |
|
|
|
| 796 |
|
|
|
| 797 |
|
|
// switch -- html/xml print
|
| 798 |
2970
|
sgarg
|
//MBJDELETED boolean printXML = false;
|
| 799 |
2912
|
harris
|
|
| 800 |
|
|
// get the spatial parameters
|
| 801 |
2970
|
sgarg
|
logMetacat.debug("params: " + params);
|
| 802 |
2912
|
harris
|
//String _xmax = (String)params.get("XMAX");
|
| 803 |
|
|
float _xmax = Float.parseFloat( ((String[]) params.get("XMAX"))[0] );
|
| 804 |
|
|
float _ymax = Float.parseFloat( ((String[]) params.get("YMAX"))[0] );
|
| 805 |
|
|
float _xmin = Float.parseFloat( ((String[]) params.get("XMIN"))[0] );
|
| 806 |
|
|
float _ymin = Float.parseFloat( ((String[]) params.get("YMIN"))[0] );
|
| 807 |
2970
|
sgarg
|
logMetacat.debug("\nxmax: " + _xmax + " \nymax:" + _ymax +
|
| 808 |
2912
|
harris
|
"\nxmin: " + _xmin + "\nymin: " + _ymin);
|
| 809 |
|
|
|
| 810 |
3028
|
perry
|
// create an s-query
|
| 811 |
|
|
String spatialQuery = createSpatialQuery(_xmin, _ymin, _xmax, _ymax);
|
| 812 |
|
|
String[] queryArray = new String[1];
|
| 813 |
|
|
queryArray[0] = spatialQuery;
|
| 814 |
|
|
params.put("query", queryArray);
|
| 815 |
2912
|
harris
|
|
| 816 |
3028
|
perry
|
// qformat
|
| 817 |
|
|
String[] qformatArray = new String[1];
|
| 818 |
|
|
try {
|
| 819 |
|
|
String _skin = ((String[]) params.get("SKIN"))[0];
|
| 820 |
|
|
qformatArray[0] = _skin;
|
| 821 |
|
|
} catch (java.lang.NullPointerException e) {
|
| 822 |
|
|
// should be "default" but keep this for backwards compatibility with knp site
|
| 823 |
|
|
logMetacat.warn("No SKIN specified for metacat actions=spatial_query... defaulting to 'knp' skin !\n");
|
| 824 |
|
|
qformatArray[0] = "knp";
|
| 825 |
|
|
}
|
| 826 |
|
|
params.put("qformat", qformatArray);
|
| 827 |
2912
|
harris
|
|
| 828 |
3028
|
perry
|
// change the action
|
| 829 |
|
|
String[] actionArray = new String[1];
|
| 830 |
|
|
actionArray[0] = "squery";
|
| 831 |
|
|
params.put("action", actionArray);
|
| 832 |
|
|
|
| 833 |
|
|
handleSQuery(out, params, response, username, groupnames, sess_id);
|
| 834 |
|
|
|
| 835 |
|
|
|
| 836 |
|
|
/* MBJ DELETED -- using Metacat query instead
|
| 837 |
2938
|
harris
|
// issue the Spatial query
|
| 838 |
2970
|
sgarg
|
//MBJ DELETED MetacatSpatialDataset _data =
|
| 839 |
|
|
//MBJ DELETED _spatialQuery.queryDatasetByCartesianBounds(_xmin, _ymin, _xmax, _ymax);
|
| 840 |
2912
|
harris
|
|
| 841 |
2938
|
harris
|
// report the number of documents returned:
|
| 842 |
2970
|
sgarg
|
//MBJ DELETED logMetacat.warn("\nThe number of documents in the BBOX query: "
|
| 843 |
|
|
//MBJ DELETED + _data.size()+" the doc. list: '" + _data.toTXT().trim()+"'" );
|
| 844 |
|
|
|
| 845 |
|
|
if ( _data.size() > 0) {
|
| 846 |
2938
|
harris
|
logMetacat.warn("\nThe number of documents in the BBOX query: "
|
| 847 |
|
|
+ _data.size()+" the doc. list: '" + _data.toTXT().trim()+"'" );
|
| 848 |
2946
|
sgarg
|
|
| 849 |
2938
|
harris
|
|
| 850 |
2919
|
harris
|
// create an s-query
|
| 851 |
|
|
String[] queryArray = new String[1];
|
| 852 |
|
|
queryArray[0] = DocumentIdQuery.createDocidQuery(_data.getDocidList());
|
| 853 |
|
|
params.put("query", queryArray);
|
| 854 |
2938
|
harris
|
|
| 855 |
|
|
// qformat
|
| 856 |
2919
|
harris
|
String[] qformatArray = new String[1];
|
| 857 |
|
|
qformatArray[0] = "knp";
|
| 858 |
|
|
params.put("qformat", qformatArray);
|
| 859 |
|
|
|
| 860 |
|
|
// change the action
|
| 861 |
|
|
String[] actionArray = new String[1];
|
| 862 |
|
|
actionArray[0] = "squery";
|
| 863 |
|
|
params.put("action", actionArray);
|
| 864 |
|
|
|
| 865 |
2912
|
harris
|
// return the list of docs and point at the spatial theme
|
| 866 |
|
|
if ( printXML) {
|
| 867 |
|
|
response.setContentType("text/xml");
|
| 868 |
2915
|
harris
|
out.println(_data.toXML() ); // write the data as xml
|
| 869 |
2912
|
harris
|
out.close();
|
| 870 |
|
|
} else {
|
| 871 |
2919
|
harris
|
logMetacat.warn("username: " + username+"\nsession: "+sess_id);
|
| 872 |
|
|
handleSQuery(out, params, response, username, groupnames, sess_id);
|
| 873 |
2912
|
harris
|
}
|
| 874 |
2946
|
sgarg
|
} else {
|
| 875 |
|
|
response.setContentType("text/html");
|
| 876 |
|
|
out.println("<html>No Datasets Selected <html>");
|
| 877 |
|
|
out.close();
|
| 878 |
|
|
}
|
| 879 |
2970
|
sgarg
|
*/
|
| 880 |
2946
|
sgarg
|
|
| 881 |
2912
|
harris
|
}
|
| 882 |
|
|
|
| 883 |
2970
|
sgarg
|
/**
|
| 884 |
|
|
* Create a metacat squery for spatial data coordinates.
|
| 885 |
|
|
*/
|
| 886 |
|
|
private String createSpatialQuery(float _xmin, float _ymin, float _xmax, float _ymax) {
|
| 887 |
|
|
StringBuffer sb = new StringBuffer();
|
| 888 |
|
|
|
| 889 |
|
|
sb.append("<pathquery version=\"1.2\">");
|
| 890 |
|
|
sb.append("<querytitle>Untitled-Search-3</querytitle>");
|
| 891 |
|
|
sb.append("<returndoctype>-//ecoinformatics.org//eml-dataset-2.0.0beta4//EN</returndoctype>");
|
| 892 |
|
|
sb.append("<returndoctype>-//ecoinformatics.org//eml-dataset-2.0.0beta6//EN</returndoctype>");
|
| 893 |
|
|
sb.append("<returndoctype>-//NCEAS//eml-dataset-2.0//EN</returndoctype>");
|
| 894 |
|
|
sb.append("<returndoctype>-//NCEAS//resource//EN</returndoctype>");
|
| 895 |
|
|
sb.append("<returndoctype>eml://ecoinformatics.org/eml-2.0.0</returndoctype>");
|
| 896 |
|
|
sb.append("<returndoctype>eml://ecoinformatics.org/eml-2.0.1</returndoctype>");
|
| 897 |
|
|
sb.append("<returndoctype>metadata</returndoctype>");
|
| 898 |
|
|
sb.append("<returnfield>dataset/title</returnfield>");
|
| 899 |
|
|
sb.append("<returnfield>originator/individualName/surName</returnfield>");
|
| 900 |
|
|
sb.append("<returnfield>originator/individualName/givenName</returnfield>");
|
| 901 |
|
|
sb.append("<returnfield>originator/organizationName</returnfield>");
|
| 902 |
|
|
sb.append("<returnfield>creator/individualName/surName</returnfield>");
|
| 903 |
|
|
sb.append("<returnfield>creator/individualName/givenName</returnfield>");
|
| 904 |
|
|
sb.append("<returnfield>creator/organizationName</returnfield>");
|
| 905 |
|
|
sb.append("<returnfield>keyword</returnfield>");
|
| 906 |
|
|
sb.append("<returnfield>entityName</returnfield>");
|
| 907 |
|
|
sb.append("<returnfield>idinfo/citation/citeinfo/title</returnfield>");
|
| 908 |
|
|
sb.append("<returnfield>idinfo/citation/citeinfo/origin</returnfield>");
|
| 909 |
|
|
sb.append("<returnfield>idinfo/keywords/theme/themekey</returnfield>");
|
| 910 |
|
|
sb.append("<querygroup operator=\"INTERSECT\">");
|
| 911 |
3028
|
perry
|
sb.append("<queryterm searchmode=\"greater-than\" casesensitive=\"false\">");
|
| 912 |
2970
|
sgarg
|
sb.append("<value>" + _ymin + "</value>");
|
| 913 |
|
|
sb.append("<pathexpr>northBoundingCoordinate</pathexpr>");
|
| 914 |
|
|
sb.append("</queryterm>");
|
| 915 |
3028
|
perry
|
sb.append("<queryterm searchmode=\"less-than\" casesensitive=\"false\">");
|
| 916 |
2970
|
sgarg
|
sb.append("<value>" + _ymax + "</value>");
|
| 917 |
3028
|
perry
|
sb.append("<pathexpr>southBoundingCoordinate</pathexpr>");
|
| 918 |
2970
|
sgarg
|
sb.append("</queryterm>");
|
| 919 |
3028
|
perry
|
sb.append("<queryterm searchmode=\"greater-than\" casesensitive=\"false\">");
|
| 920 |
2970
|
sgarg
|
sb.append("<value>" + _xmin + "</value>");
|
| 921 |
3028
|
perry
|
sb.append("<pathexpr>eastBoundingCoordinate</pathexpr>");
|
| 922 |
2970
|
sgarg
|
sb.append("</queryterm>");
|
| 923 |
3028
|
perry
|
sb.append("<queryterm searchmode=\"less-than\" casesensitive=\"false\">");
|
| 924 |
2970
|
sgarg
|
sb.append("<value>" + _xmax + "</value>");
|
| 925 |
|
|
sb.append("<pathexpr>westBoundingCoordinate</pathexpr>");
|
| 926 |
|
|
sb.append("</queryterm>");
|
| 927 |
|
|
sb.append("</querygroup>");
|
| 928 |
|
|
sb.append("</pathquery>");
|
| 929 |
2912
|
harris
|
|
| 930 |
2970
|
sgarg
|
return sb.toString();
|
| 931 |
|
|
}
|
| 932 |
|
|
|
| 933 |
2098
|
jones
|
// LOGIN & LOGOUT SECTION
|
| 934 |
|
|
/**
|
| 935 |
|
|
* Handle the login request. Create a new session object. Do user
|
| 936 |
|
|
* authentication through the session.
|
| 937 |
|
|
*/
|
| 938 |
|
|
private void handleLoginAction(PrintWriter out, Hashtable params,
|
| 939 |
|
|
HttpServletRequest request, HttpServletResponse response)
|
| 940 |
943
|
tao
|
{
|
| 941 |
2753
|
jones
|
Logger logMetacat = Logger.getLogger(MetaCatServlet.class);
|
| 942 |
2098
|
jones
|
AuthSession sess = null;
|
| 943 |
2252
|
sgarg
|
|
| 944 |
|
|
if(params.get("username") == null){
|
| 945 |
|
|
response.setContentType("text/xml");
|
| 946 |
|
|
out.println("<?xml version=\"1.0\"?>");
|
| 947 |
|
|
out.println("<error>");
|
| 948 |
|
|
out.println("Username not specified");
|
| 949 |
|
|
out.println("</error>");
|
| 950 |
|
|
return;
|
| 951 |
|
|
}
|
| 952 |
|
|
|
| 953 |
2912
|
harris
|
//}
|
| 954 |
|
|
|
| 955 |
2252
|
sgarg
|
if(params.get("password") == null){
|
| 956 |
|
|
response.setContentType("text/xml");
|
| 957 |
|
|
out.println("<?xml version=\"1.0\"?>");
|
| 958 |
|
|
out.println("<error>");
|
| 959 |
|
|
out.println("Password not specified");
|
| 960 |
|
|
out.println("</error>");
|
| 961 |
|
|
return;
|
| 962 |
|
|
}
|
| 963 |
|
|
|
| 964 |
2098
|
jones
|
String un = ((String[]) params.get("username"))[0];
|
| 965 |
2753
|
jones
|
logMetacat.info("user " + un + " is trying to login");
|
| 966 |
2098
|
jones
|
String pw = ((String[]) params.get("password"))[0];
|
| 967 |
943
|
tao
|
|
| 968 |
2252
|
sgarg
|
String qformat = "xml";
|
| 969 |
|
|
if(params.get("qformat") != null){
|
| 970 |
|
|
qformat = ((String[]) params.get("qformat"))[0];
|
| 971 |
|
|
}
|
| 972 |
|
|
|
| 973 |
2098
|
jones
|
try {
|
| 974 |
|
|
sess = new AuthSession();
|
| 975 |
|
|
} catch (Exception e) {
|
| 976 |
|
|
System.out.println("error in MetacatServlet.handleLoginAction: "
|
| 977 |
|
|
+ e.getMessage());
|
| 978 |
|
|
out.println(e.getMessage());
|
| 979 |
|
|
return;
|
| 980 |
|
|
}
|
| 981 |
|
|
boolean isValid = sess.authenticate(request, un, pw);
|
| 982 |
1360
|
tao
|
|
| 983 |
2098
|
jones
|
//if it is authernticate is true, store the session
|
| 984 |
|
|
if (isValid) {
|
| 985 |
|
|
HttpSession session = sess.getSessions();
|
| 986 |
|
|
String id = session.getId();
|
| 987 |
2663
|
sgarg
|
logMetacat.info("Store session id " + id
|
| 988 |
2098
|
jones
|
+ "which has username" + session.getAttribute("username")
|
| 989 |
2663
|
sgarg
|
+ " into hash in login method");
|
| 990 |
2098
|
jones
|
sessionHash.put(id, session);
|
| 991 |
|
|
}
|
| 992 |
1360
|
tao
|
|
| 993 |
2098
|
jones
|
// format and transform the output
|
| 994 |
|
|
if (qformat.equals("xml")) {
|
| 995 |
|
|
response.setContentType("text/xml");
|
| 996 |
|
|
out.println(sess.getMessage());
|
| 997 |
|
|
} else {
|
| 998 |
|
|
try {
|
| 999 |
|
|
DBTransform trans = new DBTransform();
|
| 1000 |
|
|
response.setContentType("text/html");
|
| 1001 |
|
|
trans.transformXMLDocument(sess.getMessage(),
|
| 1002 |
|
|
"-//NCEAS//login//EN", "-//W3C//HTML//EN", qformat,
|
| 1003 |
|
|
out, null);
|
| 1004 |
|
|
} catch (Exception e) {
|
| 1005 |
1360
|
tao
|
|
| 1006 |
2663
|
sgarg
|
logMetacat.error(
|
| 1007 |
2098
|
jones
|
"Error in MetaCatServlet.handleLoginAction: "
|
| 1008 |
2663
|
sgarg
|
+ e.getMessage());
|
| 1009 |
2098
|
jones
|
}
|
| 1010 |
|
|
}
|
| 1011 |
|
|
}
|
| 1012 |
1716
|
berkley
|
|
| 1013 |
2098
|
jones
|
/**
|
| 1014 |
|
|
* Handle the logout request. Close the connection.
|
| 1015 |
|
|
*/
|
| 1016 |
|
|
private void handleLogoutAction(PrintWriter out, Hashtable params,
|
| 1017 |
|
|
HttpServletRequest request, HttpServletResponse response)
|
| 1018 |
1483
|
tao
|
{
|
| 1019 |
2753
|
jones
|
Logger logMetacat = Logger.getLogger(MetaCatServlet.class);
|
| 1020 |
2252
|
sgarg
|
String qformat = "xml";
|
| 1021 |
|
|
if(params.get("qformat") != null){
|
| 1022 |
|
|
qformat = ((String[]) params.get("qformat"))[0];
|
| 1023 |
|
|
}
|
| 1024 |
1716
|
berkley
|
|
| 1025 |
2098
|
jones
|
// close the connection
|
| 1026 |
|
|
HttpSession sess = request.getSession(false);
|
| 1027 |
2663
|
sgarg
|
logMetacat.info("After get session in logout request");
|
| 1028 |
2098
|
jones
|
if (sess != null) {
|
| 1029 |
2663
|
sgarg
|
logMetacat.info("The session id " + sess.getId()
|
| 1030 |
|
|
+ " will be invalidate in logout action");
|
| 1031 |
2753
|
jones
|
logMetacat.info("The session contains user "
|
| 1032 |
2098
|
jones
|
+ sess.getAttribute("username")
|
| 1033 |
2663
|
sgarg
|
+ " will be invalidate in logout action");
|
| 1034 |
2098
|
jones
|
sess.invalidate();
|
| 1035 |
|
|
}
|
| 1036 |
1716
|
berkley
|
|
| 1037 |
2098
|
jones
|
// produce output
|
| 1038 |
|
|
StringBuffer output = new StringBuffer();
|
| 1039 |
|
|
output.append("<?xml version=\"1.0\"?>");
|
| 1040 |
|
|
output.append("<logout>");
|
| 1041 |
|
|
output.append("User logged out");
|
| 1042 |
|
|
output.append("</logout>");
|
| 1043 |
1483
|
tao
|
|
| 1044 |
2098
|
jones
|
//format and transform the output
|
| 1045 |
|
|
if (qformat.equals("xml")) {
|
| 1046 |
|
|
response.setContentType("text/xml");
|
| 1047 |
|
|
out.println(output.toString());
|
| 1048 |
|
|
} else {
|
| 1049 |
|
|
try {
|
| 1050 |
|
|
DBTransform trans = new DBTransform();
|
| 1051 |
|
|
response.setContentType("text/html");
|
| 1052 |
|
|
trans.transformXMLDocument(output.toString(),
|
| 1053 |
|
|
"-//NCEAS//login//EN", "-//W3C//HTML//EN", qformat,
|
| 1054 |
|
|
out, null);
|
| 1055 |
|
|
} catch (Exception e) {
|
| 1056 |
2663
|
sgarg
|
logMetacat.error(
|
| 1057 |
2098
|
jones
|
"Error in MetaCatServlet.handleLogoutAction"
|
| 1058 |
2663
|
sgarg
|
+ e.getMessage());
|
| 1059 |
2098
|
jones
|
}
|
| 1060 |
1716
|
berkley
|
}
|
| 1061 |
2098
|
jones
|
}
|
| 1062 |
1483
|
tao
|
|
| 1063 |
2098
|
jones
|
// END OF LOGIN & LOGOUT SECTION
|
| 1064 |
1716
|
berkley
|
|
| 1065 |
2098
|
jones
|
// SQUERY & QUERY SECTION
|
| 1066 |
|
|
/**
|
| 1067 |
|
|
* Retreive the squery xml, execute it and display it
|
| 1068 |
2169
|
sgarg
|
*
|
| 1069 |
2098
|
jones
|
* @param out the output stream to the client
|
| 1070 |
|
|
* @param params the Hashtable of parameters that should be included in the
|
| 1071 |
|
|
* squery.
|
| 1072 |
|
|
* @param response the response object linked to the client
|
| 1073 |
|
|
* @param conn the database connection
|
| 1074 |
|
|
*/
|
| 1075 |
2570
|
jones
|
private void handleSQuery(PrintWriter out, Hashtable params,
|
| 1076 |
2098
|
jones
|
HttpServletResponse response, String user, String[] groups,
|
| 1077 |
|
|
String sessionid)
|
| 1078 |
|
|
{
|
| 1079 |
|
|
double startTime = System.currentTimeMillis() / 1000;
|
| 1080 |
2752
|
jones
|
DBQuery queryobj = new DBQuery();
|
| 1081 |
2098
|
jones
|
queryobj.findDocuments(response, out, params, user, groups, sessionid);
|
| 1082 |
|
|
double outPutTime = System.currentTimeMillis() / 1000;
|
| 1083 |
2753
|
jones
|
Logger logMetacat = Logger.getLogger(MetaCatServlet.class);
|
| 1084 |
|
|
logMetacat.info("Total search time for action 'squery': "
|
| 1085 |
2663
|
sgarg
|
+ (outPutTime - startTime));
|
| 1086 |
2098
|
jones
|
}
|
| 1087 |
1716
|
berkley
|
|
| 1088 |
2098
|
jones
|
/**
|
| 1089 |
|
|
* Create the xml query, execute it and display the results.
|
| 1090 |
2169
|
sgarg
|
*
|
| 1091 |
2098
|
jones
|
* @param out the output stream to the client
|
| 1092 |
|
|
* @param params the Hashtable of parameters that should be included in the
|
| 1093 |
|
|
* squery.
|
| 1094 |
|
|
* @param response the response object linked to the client
|
| 1095 |
|
|
*/
|
| 1096 |
2570
|
jones
|
private void handleQuery(PrintWriter out, Hashtable params,
|
| 1097 |
2098
|
jones
|
HttpServletResponse response, String user, String[] groups,
|
| 1098 |
|
|
String sessionid)
|
| 1099 |
1490
|
tao
|
{
|
| 1100 |
2098
|
jones
|
//create the query and run it
|
| 1101 |
|
|
String xmlquery = DBQuery.createSQuery(params);
|
| 1102 |
|
|
String[] queryArray = new String[1];
|
| 1103 |
|
|
queryArray[0] = xmlquery;
|
| 1104 |
|
|
params.put("query", queryArray);
|
| 1105 |
|
|
double startTime = System.currentTimeMillis() / 1000;
|
| 1106 |
2752
|
jones
|
DBQuery queryobj = new DBQuery();
|
| 1107 |
2098
|
jones
|
queryobj.findDocuments(response, out, params, user, groups, sessionid);
|
| 1108 |
|
|
double outPutTime = System.currentTimeMillis() / 1000;
|
| 1109 |
2753
|
jones
|
Logger logMetacat = Logger.getLogger(MetaCatServlet.class);
|
| 1110 |
|
|
logMetacat.info("Total search time for action 'query': "
|
| 1111 |
2663
|
sgarg
|
+ (outPutTime - startTime));
|
| 1112 |
1716
|
berkley
|
|
| 1113 |
2098
|
jones
|
//handleSQuery(out, params, response,user, groups, sessionid);
|
| 1114 |
1490
|
tao
|
}
|
| 1115 |
1716
|
berkley
|
|
| 1116 |
2098
|
jones
|
// END OF SQUERY & QUERY SECTION
|
| 1117 |
1716
|
berkley
|
|
| 1118 |
2098
|
jones
|
//Exoport section
|
| 1119 |
|
|
/**
|
| 1120 |
|
|
* Handle the "export" request of data package from Metacat in zip format
|
| 1121 |
2169
|
sgarg
|
*
|
| 1122 |
2098
|
jones
|
* @param params the Hashtable of HTTP request parameters
|
| 1123 |
|
|
* @param response the HTTP response object linked to the client
|
| 1124 |
|
|
* @param user the username sent the request
|
| 1125 |
|
|
* @param groups the user's groupnames
|
| 1126 |
|
|
*/
|
| 1127 |
2169
|
sgarg
|
private void handleExportAction(Hashtable params,
|
| 1128 |
|
|
HttpServletResponse response,
|
| 1129 |
2102
|
jones
|
String user, String[] groups, String passWord)
|
| 1130 |
2098
|
jones
|
{
|
| 1131 |
2753
|
jones
|
Logger logMetacat = Logger.getLogger(MetaCatServlet.class);
|
| 1132 |
2098
|
jones
|
// Output stream
|
| 1133 |
|
|
ServletOutputStream out = null;
|
| 1134 |
|
|
// Zip output stream
|
| 1135 |
|
|
ZipOutputStream zOut = null;
|
| 1136 |
|
|
DBQuery queryObj = null;
|
| 1137 |
1716
|
berkley
|
|
| 1138 |
2098
|
jones
|
String[] docs = new String[10];
|
| 1139 |
|
|
String docId = "";
|
| 1140 |
1360
|
tao
|
|
| 1141 |
731
|
bojilova
|
try {
|
| 1142 |
2098
|
jones
|
// read the params
|
| 1143 |
|
|
if (params.containsKey("docid")) {
|
| 1144 |
|
|
docs = (String[]) params.get("docid");
|
| 1145 |
731
|
bojilova
|
}
|
| 1146 |
2098
|
jones
|
// Create a DBuery to handle export
|
| 1147 |
2752
|
jones
|
queryObj = new DBQuery();
|
| 1148 |
2098
|
jones
|
// Get the docid
|
| 1149 |
|
|
docId = docs[0];
|
| 1150 |
|
|
// Make sure the client specify docid
|
| 1151 |
|
|
if (docId == null || docId.equals("")) {
|
| 1152 |
|
|
response.setContentType("text/xml"); //MIME type
|
| 1153 |
|
|
// Get a printwriter
|
| 1154 |
|
|
PrintWriter pw = response.getWriter();
|
| 1155 |
|
|
// Send back message
|
| 1156 |
|
|
pw.println("<?xml version=\"1.0\"?>");
|
| 1157 |
|
|
pw.println("<error>");
|
| 1158 |
|
|
pw.println("You didn't specify requested docid");
|
| 1159 |
|
|
pw.println("</error>");
|
| 1160 |
|
|
// Close printwriter
|
| 1161 |
|
|
pw.close();
|
| 1162 |
|
|
return;
|
| 1163 |
|
|
}
|
| 1164 |
|
|
// Get output stream
|
| 1165 |
|
|
out = response.getOutputStream();
|
| 1166 |
|
|
response.setContentType("application/zip"); //MIME type
|
| 1167 |
2556
|
sgarg
|
response.setHeader("Content-Disposition",
|
| 1168 |
|
|
"attachment; filename="
|
| 1169 |
|
|
+ docId + ".zip"); // Set the name of the zip file
|
| 1170 |
|
|
|
| 1171 |
2098
|
jones
|
zOut = new ZipOutputStream(out);
|
| 1172 |
|
|
zOut = queryObj
|
| 1173 |
|
|
.getZippedPackage(docId, out, user, groups, passWord);
|
| 1174 |
|
|
zOut.finish(); //terminate the zip file
|
| 1175 |
|
|
zOut.close(); //close the zip stream
|
| 1176 |
731
|
bojilova
|
|
| 1177 |
2098
|
jones
|
} catch (Exception e) {
|
| 1178 |
|
|
try {
|
| 1179 |
|
|
response.setContentType("text/xml"); //MIME type
|
| 1180 |
|
|
// Send error message back
|
| 1181 |
|
|
if (out != null) {
|
| 1182 |
|
|
PrintWriter pw = new PrintWriter(out);
|
| 1183 |
|
|
pw.println("<?xml version=\"1.0\"?>");
|
| 1184 |
|
|
pw.println("<error>");
|
| 1185 |
|
|
pw.println(e.getMessage());
|
| 1186 |
|
|
pw.println("</error>");
|
| 1187 |
|
|
// Close printwriter
|
| 1188 |
|
|
pw.close();
|
| 1189 |
|
|
// Close output stream
|
| 1190 |
|
|
out.close();
|
| 1191 |
|
|
}
|
| 1192 |
|
|
// Close zip output stream
|
| 1193 |
|
|
if (zOut != null) {
|
| 1194 |
|
|
zOut.close();
|
| 1195 |
|
|
}
|
| 1196 |
|
|
} catch (IOException ioe) {
|
| 1197 |
2663
|
sgarg
|
logMetacat.error("Problem with the servlet output "
|
| 1198 |
2098
|
jones
|
+ "in MetacatServlet.handleExportAction: "
|
| 1199 |
2663
|
sgarg
|
+ ioe.getMessage());
|
| 1200 |
731
|
bojilova
|
}
|
| 1201 |
|
|
|
| 1202 |
2663
|
sgarg
|
logMetacat.error(
|
| 1203 |
2098
|
jones
|
"Error in MetacatServlet.handleExportAction: "
|
| 1204 |
2663
|
sgarg
|
+ e.getMessage());
|
| 1205 |
2098
|
jones
|
e.printStackTrace(System.out);
|
| 1206 |
|
|
|
| 1207 |
731
|
bojilova
|
}
|
| 1208 |
1360
|
tao
|
|
| 1209 |
2098
|
jones
|
}
|
| 1210 |
1360
|
tao
|
|
| 1211 |
2098
|
jones
|
/**
|
| 1212 |
|
|
* In eml2 document, the xml can have inline data and data was stripped off
|
| 1213 |
|
|
* and store in file system. This action can be used to read inline data
|
| 1214 |
|
|
* only
|
| 1215 |
2169
|
sgarg
|
*
|
| 1216 |
2098
|
jones
|
* @param params the Hashtable of HTTP request parameters
|
| 1217 |
|
|
* @param response the HTTP response object linked to the client
|
| 1218 |
|
|
* @param user the username sent the request
|
| 1219 |
|
|
* @param groups the user's groupnames
|
| 1220 |
|
|
*/
|
| 1221 |
|
|
private void handleReadInlineDataAction(Hashtable params,
|
| 1222 |
2169
|
sgarg
|
HttpServletRequest request, HttpServletResponse response,
|
| 1223 |
2102
|
jones
|
String user, String passWord, String[] groups)
|
| 1224 |
2098
|
jones
|
{
|
| 1225 |
2753
|
jones
|
Logger logMetacat = Logger.getLogger(MetaCatServlet.class);
|
| 1226 |
2098
|
jones
|
String[] docs = new String[10];
|
| 1227 |
|
|
String inlineDataId = null;
|
| 1228 |
|
|
String docId = "";
|
| 1229 |
|
|
ServletOutputStream out = null;
|
| 1230 |
1360
|
tao
|
|
| 1231 |
2098
|
jones
|
try {
|
| 1232 |
|
|
// read the params
|
| 1233 |
|
|
if (params.containsKey("inlinedataid")) {
|
| 1234 |
|
|
docs = (String[]) params.get("inlinedataid");
|
| 1235 |
|
|
}
|
| 1236 |
|
|
// Get the docid
|
| 1237 |
|
|
inlineDataId = docs[0];
|
| 1238 |
|
|
// Make sure the client specify docid
|
| 1239 |
2169
|
sgarg
|
if (inlineDataId == null || inlineDataId.equals("")) {
|
| 1240 |
2098
|
jones
|
throw new Exception("You didn't specify requested inlinedataid"); }
|
| 1241 |
1360
|
tao
|
|
| 1242 |
2098
|
jones
|
// check for permission
|
| 1243 |
|
|
docId = MetaCatUtil
|
| 1244 |
|
|
.getDocIdWithoutRevFromInlineDataID(inlineDataId);
|
| 1245 |
|
|
PermissionController controller = new PermissionController(docId);
|
| 1246 |
|
|
// check top level read permission
|
| 1247 |
|
|
if (!controller.hasPermission(user, groups,
|
| 1248 |
2245
|
sgarg
|
AccessControlInterface.READSTRING))
|
| 1249 |
|
|
{
|
| 1250 |
2098
|
jones
|
throw new Exception("User " + user
|
| 1251 |
|
|
+ " doesn't have permission " + " to read document "
|
| 1252 |
|
|
+ docId);
|
| 1253 |
|
|
}
|
| 1254 |
2245
|
sgarg
|
else
|
| 1255 |
|
|
{
|
| 1256 |
|
|
//check data access level
|
| 1257 |
|
|
try
|
| 1258 |
|
|
{
|
| 1259 |
|
|
Hashtable unReadableInlineDataList =
|
| 1260 |
2292
|
sgarg
|
PermissionController.getUnReadableInlineDataIdList(docId,
|
| 1261 |
|
|
user, groups, false);
|
| 1262 |
|
|
if (unReadableInlineDataList.containsValue(
|
| 1263 |
|
|
MetaCatUtil.getInlineDataIdWithoutRev(inlineDataId)))
|
| 1264 |
2245
|
sgarg
|
{
|
| 1265 |
|
|
throw new Exception("User " + user
|
| 1266 |
|
|
+ " doesn't have permission " + " to read inlinedata "
|
| 1267 |
|
|
+ inlineDataId);
|
| 1268 |
2098
|
jones
|
|
| 1269 |
2245
|
sgarg
|
}//if
|
| 1270 |
|
|
}//try
|
| 1271 |
|
|
catch (Exception e)
|
| 1272 |
|
|
{
|
| 1273 |
|
|
throw e;
|
| 1274 |
|
|
}//catch
|
| 1275 |
|
|
}//else
|
| 1276 |
|
|
|
| 1277 |
2098
|
jones
|
// Get output stream
|
| 1278 |
|
|
out = response.getOutputStream();
|
| 1279 |
|
|
// read the inline data from the file
|
| 1280 |
|
|
String inlinePath = MetaCatUtil.getOption("inlinedatafilepath");
|
| 1281 |
|
|
File lineData = new File(inlinePath, inlineDataId);
|
| 1282 |
|
|
FileInputStream input = new FileInputStream(lineData);
|
| 1283 |
|
|
byte[] buffer = new byte[4 * 1024];
|
| 1284 |
|
|
int bytes = input.read(buffer);
|
| 1285 |
|
|
while (bytes != -1) {
|
| 1286 |
|
|
out.write(buffer, 0, bytes);
|
| 1287 |
|
|
bytes = input.read(buffer);
|
| 1288 |
|
|
}
|
| 1289 |
1292
|
tao
|
out.close();
|
| 1290 |
1360
|
tao
|
|
| 1291 |
2169
|
sgarg
|
EventLog.getInstance().log(request.getRemoteAddr(), user,
|
| 1292 |
2102
|
jones
|
inlineDataId, "readinlinedata");
|
| 1293 |
2098
|
jones
|
} catch (Exception e) {
|
| 1294 |
|
|
try {
|
| 1295 |
|
|
PrintWriter pw = null;
|
| 1296 |
|
|
// Send error message back
|
| 1297 |
|
|
if (out != null) {
|
| 1298 |
|
|
pw = new PrintWriter(out);
|
| 1299 |
|
|
} else {
|
| 1300 |
|
|
pw = response.getWriter();
|
| 1301 |
|
|
}
|
| 1302 |
|
|
pw.println("<?xml version=\"1.0\"?>");
|
| 1303 |
|
|
pw.println("<error>");
|
| 1304 |
|
|
pw.println(e.getMessage());
|
| 1305 |
|
|
pw.println("</error>");
|
| 1306 |
|
|
// Close printwriter
|
| 1307 |
|
|
pw.close();
|
| 1308 |
|
|
// Close output stream if out is not null
|
| 1309 |
|
|
if (out != null) {
|
| 1310 |
|
|
out.close();
|
| 1311 |
|
|
}
|
| 1312 |
|
|
} catch (IOException ioe) {
|
| 1313 |
2663
|
sgarg
|
logMetacat.error("Problem with the servlet output "
|
| 1314 |
2098
|
jones
|
+ "in MetacatServlet.handleExportAction: "
|
| 1315 |
2663
|
sgarg
|
+ ioe.getMessage());
|
| 1316 |
2098
|
jones
|
}
|
| 1317 |
2663
|
sgarg
|
logMetacat.error(
|
| 1318 |
2098
|
jones
|
"Error in MetacatServlet.handleReadInlineDataAction: "
|
| 1319 |
2663
|
sgarg
|
+ e.getMessage());
|
| 1320 |
1292
|
tao
|
}
|
| 1321 |
2098
|
jones
|
}
|
| 1322 |
|
|
|
| 1323 |
|
|
/*
|
| 1324 |
|
|
* Get the nodeid from xml_nodes for the inlinedataid
|
| 1325 |
|
|
*/
|
| 1326 |
|
|
private long getInlineDataNodeId(String inLineDataId, String docId)
|
| 1327 |
|
|
throws SQLException
|
| 1328 |
1292
|
tao
|
{
|
| 1329 |
2753
|
jones
|
Logger logMetacat = Logger.getLogger(MetaCatServlet.class);
|
| 1330 |
2098
|
jones
|
long nodeId = 0;
|
| 1331 |
|
|
String INLINE = "inline";
|
| 1332 |
|
|
boolean hasRow;
|
| 1333 |
|
|
PreparedStatement pStmt = null;
|
| 1334 |
|
|
DBConnection conn = null;
|
| 1335 |
|
|
int serialNumber = -1;
|
| 1336 |
|
|
String sql = "SELECT nodeid FROM xml_nodes WHERE docid=? AND nodedata=? "
|
| 1337 |
|
|
+ "AND nodetype='TEXT' AND parentnodeid IN "
|
| 1338 |
|
|
+ "(SELECT nodeid FROM xml_nodes WHERE docid=? AND "
|
| 1339 |
|
|
+ "nodetype='ELEMENT' AND nodename='" + INLINE + "')";
|
| 1340 |
1360
|
tao
|
|
| 1341 |
2098
|
jones
|
try {
|
| 1342 |
|
|
//check out DBConnection
|
| 1343 |
|
|
conn = DBConnectionPool
|
| 1344 |
|
|
.getDBConnection("AccessControlList.isAllowFirst");
|
| 1345 |
|
|
serialNumber = conn.getCheckOutSerialNumber();
|
| 1346 |
1360
|
tao
|
|
| 1347 |
2098
|
jones
|
pStmt = conn.prepareStatement(sql);
|
| 1348 |
|
|
//bind value
|
| 1349 |
|
|
pStmt.setString(1, docId);//docid
|
| 1350 |
|
|
pStmt.setString(2, inLineDataId);//inlinedataid
|
| 1351 |
|
|
pStmt.setString(3, docId);
|
| 1352 |
|
|
// excute query
|
| 1353 |
|
|
pStmt.execute();
|
| 1354 |
|
|
ResultSet rs = pStmt.getResultSet();
|
| 1355 |
|
|
hasRow = rs.next();
|
| 1356 |
|
|
// get result
|
| 1357 |
|
|
if (hasRow) {
|
| 1358 |
|
|
nodeId = rs.getLong(1);
|
| 1359 |
|
|
}//if
|
| 1360 |
|
|
|
| 1361 |
|
|
} catch (SQLException e) {
|
| 1362 |
|
|
throw e;
|
| 1363 |
|
|
} finally {
|
| 1364 |
|
|
try {
|
| 1365 |
|
|
pStmt.close();
|
| 1366 |
|
|
} finally {
|
| 1367 |
|
|
DBConnectionPool.returnDBConnection(conn, serialNumber);
|
| 1368 |
|
|
}
|
| 1369 |
1292
|
tao
|
}
|
| 1370 |
2753
|
jones
|
logMetacat.debug("The nodeid for inlinedataid " + inLineDataId
|
| 1371 |
2663
|
sgarg
|
+ " is: " + nodeId);
|
| 1372 |
2098
|
jones
|
return nodeId;
|
| 1373 |
|
|
}
|
| 1374 |
1360
|
tao
|
|
| 1375 |
2098
|
jones
|
/**
|
| 1376 |
|
|
* Handle the "read" request of metadata/data files from Metacat or any
|
| 1377 |
|
|
* files from Internet; transformed metadata XML document into HTML
|
| 1378 |
|
|
* presentation if requested; zip files when more than one were requested.
|
| 1379 |
2169
|
sgarg
|
*
|
| 1380 |
2098
|
jones
|
* @param params the Hashtable of HTTP request parameters
|
| 1381 |
2102
|
jones
|
* @param request the HTTP request object linked to the client
|
| 1382 |
2098
|
jones
|
* @param response the HTTP response object linked to the client
|
| 1383 |
|
|
* @param user the username sent the request
|
| 1384 |
|
|
* @param groups the user's groupnames
|
| 1385 |
|
|
*/
|
| 1386 |
2102
|
jones
|
private void handleReadAction(Hashtable params, HttpServletRequest request,
|
| 1387 |
2098
|
jones
|
HttpServletResponse response, String user, String passWord,
|
| 1388 |
|
|
String[] groups)
|
| 1389 |
|
|
{
|
| 1390 |
2753
|
jones
|
Logger logMetacat = Logger.getLogger(MetaCatServlet.class);
|
| 1391 |
2098
|
jones
|
ServletOutputStream out = null;
|
| 1392 |
|
|
ZipOutputStream zout = null;
|
| 1393 |
|
|
PrintWriter pw = null;
|
| 1394 |
|
|
boolean zip = false;
|
| 1395 |
|
|
boolean withInlineData = true;
|
| 1396 |
1360
|
tao
|
|
| 1397 |
2098
|
jones
|
try {
|
| 1398 |
|
|
String[] docs = new String[0];
|
| 1399 |
|
|
String docid = "";
|
| 1400 |
|
|
String qformat = "";
|
| 1401 |
|
|
String abstrpath = null;
|
| 1402 |
731
|
bojilova
|
|
| 1403 |
2098
|
jones
|
// read the params
|
| 1404 |
|
|
if (params.containsKey("docid")) {
|
| 1405 |
|
|
docs = (String[]) params.get("docid");
|
| 1406 |
|
|
}
|
| 1407 |
|
|
if (params.containsKey("qformat")) {
|
| 1408 |
|
|
qformat = ((String[]) params.get("qformat"))[0];
|
| 1409 |
|
|
}
|
| 1410 |
|
|
// the param for only metadata (eml)
|
| 1411 |
2245
|
sgarg
|
// we don't support read a eml document without inline data now.
|
| 1412 |
|
|
/*if (params.containsKey("inlinedata")) {
|
| 1413 |
1360
|
tao
|
|
| 1414 |
2098
|
jones
|
String inlineData = ((String[]) params.get("inlinedata"))[0];
|
| 1415 |
|
|
if (inlineData.equalsIgnoreCase("false")) {
|
| 1416 |
|
|
withInlineData = false;
|
| 1417 |
|
|
}
|
| 1418 |
2245
|
sgarg
|
}*/
|
| 1419 |
2098
|
jones
|
if ((docs.length > 1) || qformat.equals("zip")) {
|
| 1420 |
|
|
zip = true;
|
| 1421 |
|
|
out = response.getOutputStream();
|
| 1422 |
|
|
response.setContentType("application/zip"); //MIME type
|
| 1423 |
|
|
zout = new ZipOutputStream(out);
|
| 1424 |
|
|
}
|
| 1425 |
|
|
// go through the list of docs to read
|
| 1426 |
|
|
for (int i = 0; i < docs.length; i++) {
|
| 1427 |
|
|
try {
|
| 1428 |
1360
|
tao
|
|
| 1429 |
2098
|
jones
|
URL murl = new URL(docs[i]);
|
| 1430 |
2099
|
jones
|
Hashtable murlQueryStr = MetaCatUtil.parseQuery(
|
| 1431 |
|
|
murl.getQuery());
|
| 1432 |
2098
|
jones
|
// case docid="http://.../?docid=aaa"
|
| 1433 |
|
|
// or docid="metacat://.../?docid=bbb"
|
| 1434 |
|
|
if (murlQueryStr.containsKey("docid")) {
|
| 1435 |
|
|
// get only docid, eliminate the rest
|
| 1436 |
|
|
docid = (String) murlQueryStr.get("docid");
|
| 1437 |
|
|
if (zip) {
|
| 1438 |
2102
|
jones
|
addDocToZip(request, docid, zout, user, groups);
|
| 1439 |
2098
|
jones
|
} else {
|
| 1440 |
2102
|
jones
|
readFromMetacat(request, response, docid, qformat,
|
| 1441 |
2098
|
jones
|
abstrpath, user, groups, zip, zout,
|
| 1442 |
|
|
withInlineData, params);
|
| 1443 |
|
|
}
|
| 1444 |
1360
|
tao
|
|
| 1445 |
2098
|
jones
|
// case docid="http://.../filename"
|
| 1446 |
|
|
} else {
|
| 1447 |
|
|
docid = docs[i];
|
| 1448 |
|
|
if (zip) {
|
| 1449 |
2102
|
jones
|
addDocToZip(request, docid, zout, user, groups);
|
| 1450 |
2098
|
jones
|
} else {
|
| 1451 |
|
|
readFromURLConnection(response, docid);
|
| 1452 |
|
|
}
|
| 1453 |
|
|
}
|
| 1454 |
2169
|
sgarg
|
|
| 1455 |
2098
|
jones
|
} catch (MalformedURLException mue) {
|
| 1456 |
|
|
docid = docs[i];
|
| 1457 |
|
|
if (zip) {
|
| 1458 |
2102
|
jones
|
addDocToZip(request, docid, zout, user, groups);
|
| 1459 |
2098
|
jones
|
} else {
|
| 1460 |
2169
|
sgarg
|
readFromMetacat(request, response, docid, qformat,
|
| 1461 |
|
|
abstrpath, user, groups, zip, zout,
|
| 1462 |
2102
|
jones
|
withInlineData, params);
|
| 1463 |
2098
|
jones
|
}
|
| 1464 |
|
|
}
|
| 1465 |
2099
|
jones
|
}
|
| 1466 |
1360
|
tao
|
|
| 1467 |
2098
|
jones
|
if (zip) {
|
| 1468 |
|
|
zout.finish(); //terminate the zip file
|
| 1469 |
|
|
zout.close(); //close the zip stream
|
| 1470 |
|
|
}
|
| 1471 |
1360
|
tao
|
|
| 1472 |
2098
|
jones
|
} catch (McdbDocNotFoundException notFoundE) {
|
| 1473 |
|
|
// To handle doc not found exception
|
| 1474 |
|
|
// the docid which didn't be found
|
| 1475 |
|
|
String notFoundDocId = notFoundE.getUnfoundDocId();
|
| 1476 |
|
|
String notFoundRevision = notFoundE.getUnfoundRevision();
|
| 1477 |
2663
|
sgarg
|
logMetacat.warn("Missed id: " + notFoundDocId);
|
| 1478 |
|
|
logMetacat.warn("Missed rev: " + notFoundRevision);
|
| 1479 |
2098
|
jones
|
try {
|
| 1480 |
|
|
// read docid from remote server
|
| 1481 |
|
|
readFromRemoteMetaCat(response, notFoundDocId,
|
| 1482 |
|
|
notFoundRevision, user, passWord, out, zip, zout);
|
| 1483 |
|
|
// Close zout outputstream
|
| 1484 |
|
|
if (zout != null) {
|
| 1485 |
|
|
zout.close();
|
| 1486 |
|
|
}
|
| 1487 |
|
|
// close output stream
|
| 1488 |
|
|
if (out != null) {
|
| 1489 |
|
|
out.close();
|
| 1490 |
|
|
}
|
| 1491 |
1360
|
tao
|
|
| 1492 |
2098
|
jones
|
} catch (Exception exc) {
|
| 1493 |
2663
|
sgarg
|
logMetacat.error(
|
| 1494 |
2098
|
jones
|
"Erorr in MetacatServlet.hanldReadAction: "
|
| 1495 |
2663
|
sgarg
|
+ exc.getMessage());
|
| 1496 |
2098
|
jones
|
try {
|
| 1497 |
|
|
if (out != null) {
|
| 1498 |
|
|
response.setContentType("text/xml");
|
| 1499 |
|
|
// Send back error message by printWriter
|
| 1500 |
|
|
pw = new PrintWriter(out);
|
| 1501 |
|
|
pw.println("<?xml version=\"1.0\"?>");
|
| 1502 |
|
|
pw.println("<error>");
|
| 1503 |
|
|
pw.println(notFoundE.getMessage());
|
| 1504 |
|
|
pw.println("</error>");
|
| 1505 |
|
|
pw.close();
|
| 1506 |
|
|
out.close();
|
| 1507 |
1360
|
tao
|
|
| 1508 |
2098
|
jones
|
} else {
|
| 1509 |
|
|
response.setContentType("text/xml"); //MIME type
|
| 1510 |
|
|
// Send back error message if out = null
|
| 1511 |
|
|
if (pw == null) {
|
| 1512 |
|
|
// If pw is null, open the respnose
|
| 1513 |
|
|
pw = response.getWriter();
|
| 1514 |
|
|
}
|
| 1515 |
|
|
pw.println("<?xml version=\"1.0\"?>");
|
| 1516 |
|
|
pw.println("<error>");
|
| 1517 |
|
|
pw.println(notFoundE.getMessage());
|
| 1518 |
|
|
pw.println("</error>");
|
| 1519 |
|
|
pw.close();
|
| 1520 |
|
|
}
|
| 1521 |
|
|
// close zout
|
| 1522 |
|
|
if (zout != null) {
|
| 1523 |
|
|
zout.close();
|
| 1524 |
|
|
}
|
| 1525 |
|
|
} catch (IOException ie) {
|
| 1526 |
2663
|
sgarg
|
logMetacat.error("Problem with the servlet output "
|
| 1527 |
2098
|
jones
|
+ "in MetacatServlet.handleReadAction: "
|
| 1528 |
2663
|
sgarg
|
+ ie.getMessage());
|
| 1529 |
2098
|
jones
|
}
|
| 1530 |
|
|
}
|
| 1531 |
|
|
} catch (Exception e) {
|
| 1532 |
|
|
try {
|
| 1533 |
1716
|
berkley
|
|
| 1534 |
2098
|
jones
|
if (out != null) {
|
| 1535 |
|
|
response.setContentType("text/xml"); //MIME type
|
| 1536 |
|
|
pw = new PrintWriter(out);
|
| 1537 |
|
|
pw.println("<?xml version=\"1.0\"?>");
|
| 1538 |
|
|
pw.println("<error>");
|
| 1539 |
|
|
pw.println(e.getMessage());
|
| 1540 |
|
|
pw.println("</error>");
|
| 1541 |
|
|
pw.close();
|
| 1542 |
|
|
out.close();
|
| 1543 |
|
|
} else {
|
| 1544 |
|
|
response.setContentType("text/xml"); //MIME type
|
| 1545 |
|
|
// Send back error message if out = null
|
| 1546 |
|
|
if (pw == null) {
|
| 1547 |
|
|
pw = response.getWriter();
|
| 1548 |
|
|
}
|
| 1549 |
|
|
pw.println("<?xml version=\"1.0\"?>");
|
| 1550 |
|
|
pw.println("<error>");
|
| 1551 |
|
|
pw.println(e.getMessage());
|
| 1552 |
|
|
pw.println("</error>");
|
| 1553 |
|
|
pw.close();
|
| 1554 |
1360
|
tao
|
|
| 1555 |
2098
|
jones
|
}
|
| 1556 |
|
|
// Close zip output stream
|
| 1557 |
|
|
if (zout != null) {
|
| 1558 |
|
|
zout.close();
|
| 1559 |
|
|
}
|
| 1560 |
1360
|
tao
|
|
| 1561 |
2098
|
jones
|
} catch (IOException ioe) {
|
| 1562 |
2663
|
sgarg
|
logMetacat.error("Problem with the servlet output "
|
| 1563 |
2098
|
jones
|
+ "in MetacatServlet.handleReadAction: "
|
| 1564 |
2663
|
sgarg
|
+ ioe.getMessage());
|
| 1565 |
2098
|
jones
|
ioe.printStackTrace(System.out);
|
| 1566 |
731
|
bojilova
|
|
| 1567 |
2098
|
jones
|
}
|
| 1568 |
1360
|
tao
|
|
| 1569 |
2663
|
sgarg
|
logMetacat.error(
|
| 1570 |
2098
|
jones
|
"Error in MetacatServlet.handleReadAction: "
|
| 1571 |
2663
|
sgarg
|
+ e.getMessage());
|
| 1572 |
2098
|
jones
|
//e.printStackTrace(System.out);
|
| 1573 |
731
|
bojilova
|
}
|
| 1574 |
2098
|
jones
|
}
|
| 1575 |
1360
|
tao
|
|
| 1576 |
2169
|
sgarg
|
/** read metadata or data from Metacat
|
| 1577 |
2098
|
jones
|
*/
|
| 1578 |
2169
|
sgarg
|
private void readFromMetacat(HttpServletRequest request,
|
| 1579 |
2102
|
jones
|
HttpServletResponse response, String docid, String qformat,
|
| 1580 |
|
|
String abstrpath, String user, String[] groups, boolean zip,
|
| 1581 |
|
|
ZipOutputStream zout, boolean withInlineData, Hashtable params)
|
| 1582 |
|
|
throws ClassNotFoundException, IOException, SQLException,
|
| 1583 |
|
|
McdbException, Exception
|
| 1584 |
1292
|
tao
|
{
|
| 1585 |
2753
|
jones
|
Logger logMetacat = Logger.getLogger(MetaCatServlet.class);
|
| 1586 |
2098
|
jones
|
try {
|
| 1587 |
2648
|
tao
|
|
| 1588 |
|
|
// here is hack for handle docid=john.10(in order to tell mike.jim.10.1
|
| 1589 |
|
|
// mike.jim.10, we require to provide entire docid with rev). But
|
| 1590 |
|
|
// some old client they only provide docid without rev, so we need
|
| 1591 |
|
|
// to handle this suituation. First we will check how many
|
| 1592 |
|
|
// seperator here, if only one, we will append the rev in xml_documents
|
| 1593 |
|
|
// to the id.
|
| 1594 |
|
|
docid = appendRev(docid);
|
| 1595 |
|
|
|
| 1596 |
2098
|
jones
|
DocumentImpl doc = new DocumentImpl(docid);
|
| 1597 |
1360
|
tao
|
|
| 1598 |
2098
|
jones
|
//check the permission for read
|
| 1599 |
2113
|
jones
|
if (!DocumentImpl.hasReadPermission(user, groups, docid)) {
|
| 1600 |
2098
|
jones
|
Exception e = new Exception("User " + user
|
| 1601 |
|
|
+ " does not have permission"
|
| 1602 |
|
|
+ " to read the document with the docid " + docid);
|
| 1603 |
731
|
bojilova
|
|
| 1604 |
2098
|
jones
|
throw e;
|
| 1605 |
|
|
}
|
| 1606 |
1360
|
tao
|
|
| 1607 |
2098
|
jones
|
if (doc.getRootNodeID() == 0) {
|
| 1608 |
|
|
// this is data file
|
| 1609 |
|
|
String filepath = MetaCatUtil.getOption("datafilepath");
|
| 1610 |
|
|
if (!filepath.endsWith("/")) {
|
| 1611 |
|
|
filepath += "/";
|
| 1612 |
|
|
}
|
| 1613 |
|
|
String filename = filepath + docid;
|
| 1614 |
|
|
FileInputStream fin = null;
|
| 1615 |
|
|
fin = new FileInputStream(filename);
|
| 1616 |
1360
|
tao
|
|
| 1617 |
2098
|
jones
|
//MIME type
|
| 1618 |
|
|
String contentType = getServletContext().getMimeType(filename);
|
| 1619 |
|
|
if (contentType == null) {
|
| 1620 |
|
|
ContentTypeProvider provider = new ContentTypeProvider(
|
| 1621 |
|
|
docid);
|
| 1622 |
|
|
contentType = provider.getContentType();
|
| 1623 |
2753
|
jones
|
logMetacat.info("Final contenttype is: "
|
| 1624 |
2663
|
sgarg
|
+ contentType);
|
| 1625 |
2098
|
jones
|
}
|
| 1626 |
731
|
bojilova
|
|
| 1627 |
2098
|
jones
|
response.setContentType(contentType);
|
| 1628 |
|
|
// if we decide to use "application/octet-stream" for all data
|
| 1629 |
|
|
// returns
|
| 1630 |
|
|
// response.setContentType("application/octet-stream");
|
| 1631 |
731
|
bojilova
|
|
| 1632 |
2098
|
jones
|
try {
|
| 1633 |
731
|
bojilova
|
|
| 1634 |
2098
|
jones
|
ServletOutputStream out = response.getOutputStream();
|
| 1635 |
|
|
byte[] buf = new byte[4 * 1024]; // 4K buffer
|
| 1636 |
|
|
int b = fin.read(buf);
|
| 1637 |
|
|
while (b != -1) {
|
| 1638 |
|
|
out.write(buf, 0, b);
|
| 1639 |
|
|
b = fin.read(buf);
|
| 1640 |
|
|
}
|
| 1641 |
|
|
} finally {
|
| 1642 |
|
|
if (fin != null) fin.close();
|
| 1643 |
|
|
}
|
| 1644 |
2169
|
sgarg
|
|
| 1645 |
2098
|
jones
|
} else {
|
| 1646 |
|
|
// this is metadata doc
|
| 1647 |
2273
|
sgarg
|
if (qformat.equals("xml") || qformat.equals("")) {
|
| 1648 |
|
|
// if equals "", that means no qformat is specified. hence
|
| 1649 |
|
|
// by default the document should be returned in xml format
|
| 1650 |
2098
|
jones
|
// set content type first
|
| 1651 |
|
|
response.setContentType("text/xml"); //MIME type
|
| 1652 |
|
|
PrintWriter out = response.getWriter();
|
| 1653 |
|
|
doc.toXml(out, user, groups, withInlineData);
|
| 1654 |
|
|
} else {
|
| 1655 |
|
|
response.setContentType("text/html"); //MIME type
|
| 1656 |
|
|
PrintWriter out = response.getWriter();
|
| 1657 |
1360
|
tao
|
|
| 1658 |
2098
|
jones
|
// Look up the document type
|
| 1659 |
|
|
String doctype = doc.getDoctype();
|
| 1660 |
|
|
// Transform the document to the new doctype
|
| 1661 |
|
|
DBTransform dbt = new DBTransform();
|
| 1662 |
|
|
dbt.transformXMLDocument(doc.toString(user, groups,
|
| 1663 |
|
|
withInlineData), doctype, "-//W3C//HTML//EN",
|
| 1664 |
|
|
qformat, out, params);
|
| 1665 |
|
|
}
|
| 1666 |
1360
|
tao
|
|
| 1667 |
2098
|
jones
|
}
|
| 1668 |
2169
|
sgarg
|
EventLog.getInstance().log(request.getRemoteAddr(), user,
|
| 1669 |
2101
|
jones
|
docid, "read");
|
| 1670 |
2098
|
jones
|
} catch (Exception except) {
|
| 1671 |
|
|
throw except;
|
| 1672 |
|
|
}
|
| 1673 |
|
|
}
|
| 1674 |
1360
|
tao
|
|
| 1675 |
2169
|
sgarg
|
/**
|
| 1676 |
|
|
* read data from URLConnection
|
| 1677 |
2098
|
jones
|
*/
|
| 1678 |
|
|
private void readFromURLConnection(HttpServletResponse response,
|
| 1679 |
|
|
String docid) throws IOException, MalformedURLException
|
| 1680 |
|
|
{
|
| 1681 |
|
|
ServletOutputStream out = response.getOutputStream();
|
| 1682 |
|
|
String contentType = getServletContext().getMimeType(docid); //MIME
|
| 1683 |
|
|
// type
|
| 1684 |
|
|
if (contentType == null) {
|
| 1685 |
|
|
if (docid.endsWith(".xml")) {
|
| 1686 |
|
|
contentType = "text/xml";
|
| 1687 |
|
|
} else if (docid.endsWith(".css")) {
|
| 1688 |
|
|
contentType = "text/css";
|
| 1689 |
|
|
} else if (docid.endsWith(".dtd")) {
|
| 1690 |
|
|
contentType = "text/plain";
|
| 1691 |
|
|
} else if (docid.endsWith(".xsd")) {
|
| 1692 |
|
|
contentType = "text/xml";
|
| 1693 |
|
|
} else if (docid.endsWith("/")) {
|
| 1694 |
|
|
contentType = "text/html";
|
| 1695 |
|
|
} else {
|
| 1696 |
|
|
File f = new File(docid);
|
| 1697 |
|
|
if (f.isDirectory()) {
|
| 1698 |
|
|
contentType = "text/html";
|
| 1699 |
|
|
} else {
|
| 1700 |
|
|
contentType = "application/octet-stream";
|
| 1701 |
|
|
}
|
| 1702 |
|
|
}
|
| 1703 |
1360
|
tao
|
}
|
| 1704 |
2098
|
jones
|
response.setContentType(contentType);
|
| 1705 |
|
|
// if we decide to use "application/octet-stream" for all data returns
|
| 1706 |
|
|
// response.setContentType("application/octet-stream");
|
| 1707 |
1360
|
tao
|
|
| 1708 |
2098
|
jones
|
// this is http url
|
| 1709 |
|
|
URL url = new URL(docid);
|
| 1710 |
|
|
BufferedInputStream bis = null;
|
| 1711 |
|
|
try {
|
| 1712 |
|
|
bis = new BufferedInputStream(url.openStream());
|
| 1713 |
731
|
bojilova
|
byte[] buf = new byte[4 * 1024]; // 4K buffer
|
| 1714 |
2098
|
jones
|
int b = bis.read(buf);
|
| 1715 |
731
|
bojilova
|
while (b != -1) {
|
| 1716 |
2098
|
jones
|
out.write(buf, 0, b);
|
| 1717 |
|
|
b = bis.read(buf);
|
| 1718 |
731
|
bojilova
|
}
|
| 1719 |
2098
|
jones
|
} finally {
|
| 1720 |
|
|
if (bis != null) bis.close();
|
| 1721 |
636
|
berkley
|
}
|
| 1722 |
1360
|
tao
|
|
| 1723 |
636
|
berkley
|
}
|
| 1724 |
1360
|
tao
|
|
| 1725 |
2169
|
sgarg
|
/**
|
| 1726 |
2098
|
jones
|
* read file/doc and write to ZipOutputStream
|
| 1727 |
2169
|
sgarg
|
*
|
| 1728 |
2098
|
jones
|
* @param docid
|
| 1729 |
|
|
* @param zout
|
| 1730 |
|
|
* @param user
|
| 1731 |
|
|
* @param groups
|
| 1732 |
|
|
* @throws ClassNotFoundException
|
| 1733 |
|
|
* @throws IOException
|
| 1734 |
|
|
* @throws SQLException
|
| 1735 |
|
|
* @throws McdbException
|
| 1736 |
|
|
* @throws Exception
|
| 1737 |
|
|
*/
|
| 1738 |
2169
|
sgarg
|
private void addDocToZip(HttpServletRequest request, String docid,
|
| 1739 |
2102
|
jones
|
ZipOutputStream zout, String user, String[] groups) throws
|
| 1740 |
|
|
ClassNotFoundException, IOException, SQLException, McdbException,
|
| 1741 |
|
|
Exception
|
| 1742 |
1293
|
tao
|
{
|
| 1743 |
2098
|
jones
|
byte[] bytestring = null;
|
| 1744 |
|
|
ZipEntry zentry = null;
|
| 1745 |
1360
|
tao
|
|
| 1746 |
598
|
bojilova
|
try {
|
| 1747 |
2098
|
jones
|
URL url = new URL(docid);
|
| 1748 |
1360
|
tao
|
|
| 1749 |
2098
|
jones
|
// this http url; read from URLConnection; add to zip
|
| 1750 |
|
|
zentry = new ZipEntry(docid);
|
| 1751 |
|
|
zout.putNextEntry(zentry);
|
| 1752 |
|
|
BufferedInputStream bis = null;
|
| 1753 |
|
|
try {
|
| 1754 |
|
|
bis = new BufferedInputStream(url.openStream());
|
| 1755 |
|
|
byte[] buf = new byte[4 * 1024]; // 4K buffer
|
| 1756 |
|
|
int b = bis.read(buf);
|
| 1757 |
|
|
while (b != -1) {
|
| 1758 |
|
|
zout.write(buf, 0, b);
|
| 1759 |
|
|
b = bis.read(buf);
|
| 1760 |
|
|
}
|
| 1761 |
|
|
} finally {
|
| 1762 |
|
|
if (bis != null) bis.close();
|
| 1763 |
|
|
}
|
| 1764 |
|
|
zout.closeEntry();
|
| 1765 |
1716
|
berkley
|
|
| 1766 |
2098
|
jones
|
} catch (MalformedURLException mue) {
|
| 1767 |
203
|
jones
|
|
| 1768 |
2098
|
jones
|
// this is metacat doc (data file or metadata doc)
|
| 1769 |
|
|
try {
|
| 1770 |
|
|
DocumentImpl doc = new DocumentImpl(docid);
|
| 1771 |
1360
|
tao
|
|
| 1772 |
2098
|
jones
|
//check the permission for read
|
| 1773 |
2113
|
jones
|
if (!DocumentImpl.hasReadPermission(user, groups, docid)) {
|
| 1774 |
2098
|
jones
|
Exception e = new Exception("User " + user
|
| 1775 |
|
|
+ " does not have "
|
| 1776 |
|
|
+ "permission to read the document with the docid "
|
| 1777 |
|
|
+ docid);
|
| 1778 |
|
|
throw e;
|
| 1779 |
|
|
}
|
| 1780 |
1360
|
tao
|
|
| 1781 |
2098
|
jones
|
if (doc.getRootNodeID() == 0) {
|
| 1782 |
|
|
// this is data file; add file to zip
|
| 1783 |
|
|
String filepath = MetaCatUtil.getOption("datafilepath");
|
| 1784 |
|
|
if (!filepath.endsWith("/")) {
|
| 1785 |
|
|
filepath += "/";
|
| 1786 |
|
|
}
|
| 1787 |
|
|
String filename = filepath + docid;
|
| 1788 |
|
|
FileInputStream fin = null;
|
| 1789 |
|
|
fin = new FileInputStream(filename);
|
| 1790 |
|
|
try {
|
| 1791 |
1360
|
tao
|
|
| 1792 |
2098
|
jones
|
zentry = new ZipEntry(docid);
|
| 1793 |
|
|
zout.putNextEntry(zentry);
|
| 1794 |
|
|
byte[] buf = new byte[4 * 1024]; // 4K buffer
|
| 1795 |
|
|
int b = fin.read(buf);
|
| 1796 |
|
|
while (b != -1) {
|
| 1797 |
|
|
zout.write(buf, 0, b);
|
| 1798 |
|
|
b = fin.read(buf);
|
| 1799 |
|
|
}
|
| 1800 |
|
|
} finally {
|
| 1801 |
|
|
if (fin != null) fin.close();
|
| 1802 |
|
|
}
|
| 1803 |
|
|
zout.closeEntry();
|
| 1804 |
1716
|
berkley
|
|
| 1805 |
2098
|
jones
|
} else {
|
| 1806 |
|
|
// this is metadata doc; add doc to zip
|
| 1807 |
|
|
bytestring = doc.toString().getBytes();
|
| 1808 |
|
|
zentry = new ZipEntry(docid + ".xml");
|
| 1809 |
|
|
zentry.setSize(bytestring.length);
|
| 1810 |
|
|
zout.putNextEntry(zentry);
|
| 1811 |
|
|
zout.write(bytestring, 0, bytestring.length);
|
| 1812 |
|
|
zout.closeEntry();
|
| 1813 |
|
|
}
|
| 1814 |
2169
|
sgarg
|
EventLog.getInstance().log(request.getRemoteAddr(), user,
|
| 1815 |
2101
|
jones
|
docid, "read");
|
| 1816 |
2098
|
jones
|
} catch (Exception except) {
|
| 1817 |
|
|
throw except;
|
| 1818 |
|
|
}
|
| 1819 |
1360
|
tao
|
}
|
| 1820 |
2098
|
jones
|
}
|
| 1821 |
309
|
bojilova
|
|
| 1822 |
2098
|
jones
|
/**
|
| 1823 |
|
|
* If metacat couldn't find a data file or document locally, it will read
|
| 1824 |
|
|
* this docid from its home server. This is for the replication feature
|
| 1825 |
|
|
*/
|
| 1826 |
|
|
private void readFromRemoteMetaCat(HttpServletResponse response,
|
| 1827 |
|
|
String docid, String rev, String user, String password,
|
| 1828 |
|
|
ServletOutputStream out, boolean zip, ZipOutputStream zout)
|
| 1829 |
|
|
throws Exception
|
| 1830 |
1466
|
tao
|
{
|
| 1831 |
2098
|
jones
|
// Create a object of RemoteDocument, "" is for zipEntryPath
|
| 1832 |
|
|
RemoteDocument remoteDoc = new RemoteDocument(docid, rev, user,
|
| 1833 |
|
|
password, "");
|
| 1834 |
|
|
String docType = remoteDoc.getDocType();
|
| 1835 |
|
|
// Only read data file
|
| 1836 |
|
|
if (docType.equals("BIN")) {
|
| 1837 |
|
|
// If it is zip format
|
| 1838 |
|
|
if (zip) {
|
| 1839 |
|
|
remoteDoc.readDocumentFromRemoteServerByZip(zout);
|
| 1840 |
|
|
} else {
|
| 1841 |
|
|
if (out == null) {
|
| 1842 |
|
|
out = response.getOutputStream();
|
| 1843 |
|
|
}
|
| 1844 |
|
|
response.setContentType("application/octet-stream");
|
| 1845 |
|
|
remoteDoc.readDocumentFromRemoteServer(out);
|
| 1846 |
|
|
}
|
| 1847 |
|
|
} else {
|
| 1848 |
|
|
throw new Exception("Docid: " + docid + "." + rev
|
| 1849 |
|
|
+ " couldn't find");
|
| 1850 |
|
|
}
|
| 1851 |
203
|
jones
|
}
|
| 1852 |
|
|
|
| 1853 |
2098
|
jones
|
/**
|
| 1854 |
|
|
* Handle the database putdocument request and write an XML document to the
|
| 1855 |
|
|
* database connection
|
| 1856 |
|
|
*/
|
| 1857 |
2102
|
jones
|
private void handleInsertOrUpdateAction(HttpServletRequest request,
|
| 1858 |
|
|
HttpServletResponse response, PrintWriter out, Hashtable params,
|
| 1859 |
2098
|
jones
|
String user, String[] groups)
|
| 1860 |
|
|
{
|
| 1861 |
2753
|
jones
|
Logger logMetacat = Logger.getLogger(MetaCatServlet.class);
|
| 1862 |
2098
|
jones
|
DBConnection dbConn = null;
|
| 1863 |
|
|
int serialNumber = -1;
|
| 1864 |
1360
|
tao
|
|
| 1865 |
2252
|
sgarg
|
if(params.get("docid") == null){
|
| 1866 |
|
|
out.println("<?xml version=\"1.0\"?>");
|
| 1867 |
|
|
out.println("<error>");
|
| 1868 |
|
|
out.println("Docid not specified");
|
| 1869 |
|
|
out.println("</error>");
|
| 1870 |
2663
|
sgarg
|
logMetacat.error("Docid not specified");
|
| 1871 |
2252
|
sgarg
|
return;
|
| 1872 |
|
|
}
|
| 1873 |
2576
|
sgarg
|
|
| 1874 |
|
|
if(!MetaCatUtil.canInsertOrUpdate(user, groups)){
|
| 1875 |
|
|
out.println("<?xml version=\"1.0\"?>");
|
| 1876 |
|
|
out.println("<error>");
|
| 1877 |
|
|
out.println("User '" + user + "' not allowed to insert and update");
|
| 1878 |
|
|
out.println("</error>");
|
| 1879 |
2663
|
sgarg
|
logMetacat.error("User '" + user + "' not allowed to insert and update");
|
| 1880 |
2576
|
sgarg
|
return;
|
| 1881 |
|
|
}
|
| 1882 |
2252
|
sgarg
|
|
| 1883 |
2098
|
jones
|
try {
|
| 1884 |
|
|
// Get the document indicated
|
| 1885 |
|
|
String[] doctext = (String[]) params.get("doctext");
|
| 1886 |
|
|
String pub = null;
|
| 1887 |
|
|
if (params.containsKey("public")) {
|
| 1888 |
|
|
pub = ((String[]) params.get("public"))[0];
|
| 1889 |
|
|
}
|
| 1890 |
1360
|
tao
|
|
| 1891 |
2098
|
jones
|
StringReader dtd = null;
|
| 1892 |
|
|
if (params.containsKey("dtdtext")) {
|
| 1893 |
|
|
String[] dtdtext = (String[]) params.get("dtdtext");
|
| 1894 |
|
|
try {
|
| 1895 |
|
|
if (!dtdtext[0].equals("")) {
|
| 1896 |
|
|
dtd = new StringReader(dtdtext[0]);
|
| 1897 |
|
|
}
|
| 1898 |
|
|
} catch (NullPointerException npe) {
|
| 1899 |
|
|
}
|
| 1900 |
|
|
}
|
| 1901 |
2347
|
sgarg
|
|
| 1902 |
|
|
if(doctext == null){
|
| 1903 |
|
|
out.println("<?xml version=\"1.0\"?>");
|
| 1904 |
|
|
out.println("<error>");
|
| 1905 |
|
|
out.println("Document text not submitted");
|
| 1906 |
|
|
out.println("</error>");
|
| 1907 |
|
|
return;
|
| 1908 |
|
|
}
|
| 1909 |
|
|
|
| 1910 |
2098
|
jones
|
StringReader xml = new StringReader(doctext[0]);
|
| 1911 |
|
|
boolean validate = false;
|
| 1912 |
|
|
DocumentImplWrapper documentWrapper = null;
|
| 1913 |
|
|
try {
|
| 1914 |
|
|
// look inside XML Document for <!DOCTYPE ... PUBLIC/SYSTEM ...
|
| 1915 |
|
|
// >
|
| 1916 |
|
|
// in order to decide whether to use validation parser
|
| 1917 |
|
|
validate = needDTDValidation(xml);
|
| 1918 |
|
|
if (validate) {
|
| 1919 |
|
|
// set a dtd base validation parser
|
| 1920 |
|
|
String rule = DocumentImpl.DTD;
|
| 1921 |
|
|
documentWrapper = new DocumentImplWrapper(rule, validate);
|
| 1922 |
2711
|
sgarg
|
} else {
|
| 1923 |
|
|
|
| 1924 |
2169
|
sgarg
|
String namespace = findNamespace(xml);
|
| 1925 |
2711
|
sgarg
|
|
| 1926 |
|
|
if (namespace != null) {
|
| 1927 |
|
|
if (namespace.compareTo(DocumentImpl.EML2_0_0NAMESPACE) == 0
|
| 1928 |
|
|
|| namespace.compareTo(
|
| 1929 |
|
|
DocumentImpl.EML2_0_1NAMESPACE) == 0) {
|
| 1930 |
|
|
// set eml2 base validation parser
|
| 1931 |
|
|
String rule = DocumentImpl.EML200;
|
| 1932 |
|
|
// using emlparser to check id validation
|
| 1933 |
|
|
EMLParser parser = new EMLParser(doctext[0]);
|
| 1934 |
|
|
documentWrapper = new DocumentImplWrapper(rule, true);
|
| 1935 |
|
|
} else if (namespace.compareTo(
|
| 1936 |
2169
|
sgarg
|
DocumentImpl.EML2_1_0NAMESPACE) == 0) {
|
| 1937 |
2711
|
sgarg
|
// set eml2 base validation parser
|
| 1938 |
|
|
String rule = DocumentImpl.EML210;
|
| 1939 |
|
|
// using emlparser to check id validation
|
| 1940 |
|
|
EMLParser parser = new EMLParser(doctext[0]);
|
| 1941 |
|
|
documentWrapper = new DocumentImplWrapper(rule, true);
|
| 1942 |
|
|
} else {
|
| 1943 |
|
|
// set schema base validation parser
|
| 1944 |
|
|
String rule = DocumentImpl.SCHEMA;
|
| 1945 |
|
|
documentWrapper = new DocumentImplWrapper(rule, true);
|
| 1946 |
|
|
}
|
| 1947 |
|
|
} else {
|
| 1948 |
|
|
documentWrapper = new DocumentImplWrapper("", false);
|
| 1949 |
|
|
}
|
| 1950 |
2098
|
jones
|
}
|
| 1951 |
695
|
bojilova
|
|
| 1952 |
2098
|
jones
|
String[] action = (String[]) params.get("action");
|
| 1953 |
|
|
String[] docid = (String[]) params.get("docid");
|
| 1954 |
|
|
String newdocid = null;
|
| 1955 |
695
|
bojilova
|
|
| 1956 |
2098
|
jones
|
String doAction = null;
|
| 1957 |
|
|
if (action[0].equals("insert")) {
|
| 1958 |
|
|
doAction = "INSERT";
|
| 1959 |
|
|
} else if (action[0].equals("update")) {
|
| 1960 |
|
|
doAction = "UPDATE";
|
| 1961 |
|
|
}
|
| 1962 |
695
|
bojilova
|
|
| 1963 |
2098
|
jones
|
try {
|
| 1964 |
|
|
// get a connection from the pool
|
| 1965 |
|
|
dbConn = DBConnectionPool
|
| 1966 |
|
|
.getDBConnection("MetaCatServlet.handleInsertOrUpdateAction");
|
| 1967 |
|
|
serialNumber = dbConn.getCheckOutSerialNumber();
|
| 1968 |
1716
|
berkley
|
|
| 1969 |
2098
|
jones
|
// write the document to the database
|
| 1970 |
|
|
try {
|
| 1971 |
|
|
String accNumber = docid[0];
|
| 1972 |
2753
|
jones
|
logMetacat.debug("" + doAction + " "
|
| 1973 |
2663
|
sgarg
|
+ accNumber + "...");
|
| 1974 |
2098
|
jones
|
if (accNumber.equals("")) {
|
| 1975 |
|
|
accNumber = null;
|
| 1976 |
2102
|
jones
|
}
|
| 1977 |
2098
|
jones
|
newdocid = documentWrapper.write(dbConn, xml, pub, dtd,
|
| 1978 |
|
|
doAction, accNumber, user, groups);
|
| 1979 |
2169
|
sgarg
|
EventLog.getInstance().log(request.getRemoteAddr(),
|
| 1980 |
2102
|
jones
|
user, accNumber, action[0]);
|
| 1981 |
|
|
} catch (NullPointerException npe) {
|
| 1982 |
2098
|
jones
|
newdocid = documentWrapper.write(dbConn, xml, pub, dtd,
|
| 1983 |
|
|
doAction, null, user, groups);
|
| 1984 |
2169
|
sgarg
|
EventLog.getInstance().log(request.getRemoteAddr(),
|
| 1985 |
2102
|
jones
|
user, "", action[0]);
|
| 1986 |
|
|
}
|
| 1987 |
|
|
}
|
| 1988 |
2098
|
jones
|
finally {
|
| 1989 |
|
|
// Return db connection
|
| 1990 |
|
|
DBConnectionPool.returnDBConnection(dbConn, serialNumber);
|
| 1991 |
|
|
}
|
| 1992 |
1716
|
berkley
|
|
| 1993 |
2098
|
jones
|
// set content type and other response header fields first
|
| 1994 |
|
|
//response.setContentType("text/xml");
|
| 1995 |
|
|
out.println("<?xml version=\"1.0\"?>");
|
| 1996 |
|
|
out.println("<success>");
|
| 1997 |
|
|
out.println("<docid>" + newdocid + "</docid>");
|
| 1998 |
|
|
out.println("</success>");
|
| 1999 |
1716
|
berkley
|
|
| 2000 |
2098
|
jones
|
} catch (NullPointerException npe) {
|
| 2001 |
|
|
//response.setContentType("text/xml");
|
| 2002 |
|
|
out.println("<?xml version=\"1.0\"?>");
|
| 2003 |
|
|
out.println("<error>");
|
| 2004 |
|
|
out.println(npe.getMessage());
|
| 2005 |
|
|
out.println("</error>");
|
| 2006 |
2690
|
sgarg
|
logMetacat.warn("Error in writing eml document to the database" + npe.getMessage());
|
| 2007 |
2729
|
sgarg
|
npe.printStackTrace();
|
| 2008 |
2098
|
jones
|
}
|
| 2009 |
|
|
} catch (Exception e) {
|
| 2010 |
|
|
//response.setContentType("text/xml");
|
| 2011 |
|
|
out.println("<?xml version=\"1.0\"?>");
|
| 2012 |
|
|
out.println("<error>");
|
| 2013 |
|
|
out.println(e.getMessage());
|
| 2014 |
|
|
out.println("</error>");
|
| 2015 |
2690
|
sgarg
|
logMetacat.warn("Error in writing eml document to the database" + e.getMessage());
|
| 2016 |
2729
|
sgarg
|
e.printStackTrace();
|
| 2017 |
1760
|
tao
|
}
|
| 2018 |
1409
|
tao
|
}
|
| 2019 |
1716
|
berkley
|
|
| 2020 |
2098
|
jones
|
/**
|
| 2021 |
|
|
* Parse XML Document to look for <!DOCTYPE ... PUBLIC/SYSTEM ... > in
|
| 2022 |
|
|
* order to decide whether to use validation parser
|
| 2023 |
|
|
*/
|
| 2024 |
|
|
private static boolean needDTDValidation(StringReader xmlreader)
|
| 2025 |
|
|
throws IOException
|
| 2026 |
1629
|
tao
|
{
|
| 2027 |
2753
|
jones
|
Logger logMetacat = Logger.getLogger(MetaCatServlet.class);
|
| 2028 |
2098
|
jones
|
StringBuffer cbuff = new StringBuffer();
|
| 2029 |
|
|
java.util.Stack st = new java.util.Stack();
|
| 2030 |
|
|
boolean validate = false;
|
| 2031 |
|
|
int c;
|
| 2032 |
|
|
int inx;
|
| 2033 |
2089
|
tao
|
|
| 2034 |
2098
|
jones
|
// read from the stream until find the keywords
|
| 2035 |
|
|
while ((st.empty() || st.size() < 4) && ((c = xmlreader.read()) != -1)) {
|
| 2036 |
|
|
cbuff.append((char) c);
|
| 2037 |
1716
|
berkley
|
|
| 2038 |
2098
|
jones
|
// "<!DOCTYPE" keyword is found; put it in the stack
|
| 2039 |
|
|
if ((inx = cbuff.toString().indexOf("<!DOCTYPE")) != -1) {
|
| 2040 |
|
|
cbuff = new StringBuffer();
|
| 2041 |
|
|
st.push("<!DOCTYPE");
|
| 2042 |
|
|
}
|
| 2043 |
|
|
// "PUBLIC" keyword is found; put it in the stack
|
| 2044 |
|
|
if ((inx = cbuff.toString().indexOf("PUBLIC")) != -1) {
|
| 2045 |
|
|
cbuff = new StringBuffer();
|
| 2046 |
|
|
st.push("PUBLIC");
|
| 2047 |
|
|
}
|
| 2048 |
|
|
// "SYSTEM" keyword is found; put it in the stack
|
| 2049 |
|
|
if ((inx = cbuff.toString().indexOf("SYSTEM")) != -1) {
|
| 2050 |
|
|
cbuff = new StringBuffer();
|
| 2051 |
|
|
st.push("SYSTEM");
|
| 2052 |
|
|
}
|
| 2053 |
|
|
// ">" character is found; put it in the stack
|
| 2054 |
|
|
// ">" is found twice: fisrt from <?xml ...?>
|
| 2055 |
|
|
// and second from <!DOCTYPE ... >
|
| 2056 |
|
|
if ((inx = cbuff.toString().indexOf(">")) != -1) {
|
| 2057 |
|
|
cbuff = new StringBuffer();
|
| 2058 |
|
|
st.push(">");
|
| 2059 |
|
|
}
|
| 2060 |
|
|
}
|
| 2061 |
203
|
jones
|
|
| 2062 |
2098
|
jones
|
// close the stream
|
| 2063 |
|
|
xmlreader.reset();
|
| 2064 |
1360
|
tao
|
|
| 2065 |
2098
|
jones
|
// check the stack whether it contains the keywords:
|
| 2066 |
|
|
// "<!DOCTYPE", "PUBLIC" or "SYSTEM", and ">" in this order
|
| 2067 |
|
|
if (st.size() == 4) {
|
| 2068 |
|
|
if (((String) st.pop()).equals(">")
|
| 2069 |
|
|
&& (((String) st.peek()).equals("PUBLIC") | ((String) st
|
| 2070 |
|
|
.pop()).equals("SYSTEM"))
|
| 2071 |
|
|
&& ((String) st.pop()).equals("<!DOCTYPE")) {
|
| 2072 |
|
|
validate = true;
|
| 2073 |
|
|
}
|
| 2074 |
|
|
}
|
| 2075 |
1360
|
tao
|
|
| 2076 |
2753
|
jones
|
logMetacat.info("Validation for dtd is " + validate);
|
| 2077 |
2098
|
jones
|
return validate;
|
| 2078 |
1360
|
tao
|
}
|
| 2079 |
|
|
|
| 2080 |
2098
|
jones
|
// END OF INSERT/UPDATE SECTION
|
| 2081 |
68
|
higgins
|
|
| 2082 |
2098
|
jones
|
/* check if the xml string contains key words to specify schema loocation */
|
| 2083 |
2169
|
sgarg
|
private String findNamespace(StringReader xml) throws IOException
|
| 2084 |
2098
|
jones
|
{
|
| 2085 |
2753
|
jones
|
Logger logMetacat = Logger.getLogger(MetaCatServlet.class);
|
| 2086 |
2169
|
sgarg
|
String namespace = null;
|
| 2087 |
|
|
|
| 2088 |
|
|
String eml2_0_0NameSpace = DocumentImpl.EML2_0_0NAMESPACE;
|
| 2089 |
2224
|
sgarg
|
String eml2_0_1NameSpace = DocumentImpl.EML2_0_1NAMESPACE;
|
| 2090 |
2169
|
sgarg
|
String eml2_1_0NameSpace = DocumentImpl.EML2_1_0NAMESPACE;
|
| 2091 |
|
|
|
| 2092 |
2098
|
jones
|
if (xml == null) {
|
| 2093 |
2753
|
jones
|
logMetacat.debug("Validation for schema is "
|
| 2094 |
2663
|
sgarg
|
+ namespace);
|
| 2095 |
2169
|
sgarg
|
return namespace;
|
| 2096 |
2098
|
jones
|
}
|
| 2097 |
|
|
String targetLine = getSchemaLine(xml);
|
| 2098 |
2918
|
sgarg
|
|
| 2099 |
2098
|
jones
|
if (targetLine != null) {
|
| 2100 |
1360
|
tao
|
|
| 2101 |
2711
|
sgarg
|
// find if the root element has prefix
|
| 2102 |
|
|
String prefix = getPrefix(targetLine);
|
| 2103 |
2729
|
sgarg
|
logMetacat.info("prefix is:" + prefix);
|
| 2104 |
2711
|
sgarg
|
int startIndex = 0;
|
| 2105 |
|
|
|
| 2106 |
2729
|
sgarg
|
|
| 2107 |
2711
|
sgarg
|
if(prefix != null)
|
| 2108 |
|
|
{
|
| 2109 |
|
|
// if prefix found then look for xmlns:prefix
|
| 2110 |
|
|
// element to find the ns
|
| 2111 |
2712
|
sgarg
|
String namespaceWithPrefix = NAMESPACEKEYWORD
|
| 2112 |
|
|
+ ":" + prefix;
|
| 2113 |
2711
|
sgarg
|
startIndex = targetLine.indexOf(namespaceWithPrefix);
|
| 2114 |
2753
|
jones
|
logMetacat.debug("namespaceWithPrefix is:" + namespaceWithPrefix+":");
|
| 2115 |
|
|
logMetacat.debug("startIndex is:" + startIndex);
|
| 2116 |
2712
|
sgarg
|
|
| 2117 |
2711
|
sgarg
|
} else {
|
| 2118 |
|
|
// if prefix not found then look for xmlns
|
| 2119 |
|
|
// attribute to find the ns
|
| 2120 |
|
|
startIndex = targetLine.indexOf(NAMESPACEKEYWORD);
|
| 2121 |
2753
|
jones
|
logMetacat.debug("startIndex is:" + startIndex);
|
| 2122 |
2711
|
sgarg
|
}
|
| 2123 |
|
|
|
| 2124 |
2098
|
jones
|
int start = 1;
|
| 2125 |
|
|
int end = 1;
|
| 2126 |
2711
|
sgarg
|
String namespaceString = null;
|
| 2127 |
2098
|
jones
|
int count = 0;
|
| 2128 |
|
|
if (startIndex != -1) {
|
| 2129 |
|
|
for (int i = startIndex; i < targetLine.length(); i++) {
|
| 2130 |
|
|
if (targetLine.charAt(i) == '"') {
|
| 2131 |
|
|
count++;
|
| 2132 |
|
|
}
|
| 2133 |
|
|
if (targetLine.charAt(i) == '"' && count == 1) {
|
| 2134 |
|
|
start = i;
|
| 2135 |
|
|
}
|
| 2136 |
|
|
if (targetLine.charAt(i) == '"' && count == 2) {
|
| 2137 |
|
|
end = i;
|
| 2138 |
|
|
break;
|
| 2139 |
|
|
}
|
| 2140 |
|
|
}
|
| 2141 |
2711
|
sgarg
|
}
|
| 2142 |
|
|
// else: xmlns not found. namespace = null will be returned
|
| 2143 |
|
|
|
| 2144 |
2753
|
jones
|
logMetacat.debug("targetLine is " + targetLine);
|
| 2145 |
2729
|
sgarg
|
logMetacat.debug("start is " + end);
|
| 2146 |
|
|
logMetacat.debug("end is " + end);
|
| 2147 |
|
|
|
| 2148 |
2711
|
sgarg
|
if(start < end){
|
| 2149 |
|
|
namespaceString = targetLine.substring(start + 1, end);
|
| 2150 |
2753
|
jones
|
logMetacat.debug("namespaceString is " + namespaceString);
|
| 2151 |
2098
|
jones
|
}
|
| 2152 |
2753
|
jones
|
logMetacat.debug("namespace in xml is: "
|
| 2153 |
2711
|
sgarg
|
+ namespaceString);
|
| 2154 |
2729
|
sgarg
|
if(namespaceString != null){
|
| 2155 |
|
|
if (namespaceString.indexOf(eml2_0_0NameSpace) != -1) {
|
| 2156 |
|
|
namespace = eml2_0_0NameSpace;
|
| 2157 |
|
|
} else if (namespaceString.indexOf(eml2_0_1NameSpace) != -1) {
|
| 2158 |
|
|
namespace = eml2_0_1NameSpace;
|
| 2159 |
|
|
} else if (namespaceString.indexOf(eml2_1_0NameSpace) != -1) {
|
| 2160 |
|
|
namespace = eml2_1_0NameSpace;
|
| 2161 |
|
|
} else {
|
| 2162 |
|
|
namespace = namespaceString;
|
| 2163 |
|
|
}
|
| 2164 |
2098
|
jones
|
}
|
| 2165 |
|
|
}
|
| 2166 |
185
|
jones
|
|
| 2167 |
2753
|
jones
|
logMetacat.debug("Validation for eml is " + namespace);
|
| 2168 |
2224
|
sgarg
|
|
| 2169 |
2169
|
sgarg
|
return namespace;
|
| 2170 |
1360
|
tao
|
|
| 2171 |
103
|
jones
|
}
|
| 2172 |
68
|
higgins
|
|
| 2173 |
2098
|
jones
|
private String getSchemaLine(StringReader xml) throws IOException
|
| 2174 |
|
|
{
|
| 2175 |
2753
|
jones
|
Logger logMetacat = Logger.getLogger(MetaCatServlet.class);
|
| 2176 |
2098
|
jones
|
// find the line
|
| 2177 |
|
|
String secondLine = null;
|
| 2178 |
|
|
int count = 0;
|
| 2179 |
|
|
int endIndex = 0;
|
| 2180 |
|
|
int startIndex = 0;
|
| 2181 |
3002
|
sgarg
|
final int TARGETNUM = 1;
|
| 2182 |
2098
|
jones
|
StringBuffer buffer = new StringBuffer();
|
| 2183 |
|
|
boolean comment = false;
|
| 2184 |
3002
|
sgarg
|
boolean processingInstruction = false;
|
| 2185 |
2098
|
jones
|
char thirdPreviousCharacter = '?';
|
| 2186 |
|
|
char secondPreviousCharacter = '?';
|
| 2187 |
|
|
char previousCharacter = '?';
|
| 2188 |
|
|
char currentCharacter = '?';
|
| 2189 |
2268
|
sgarg
|
int tmp = xml.read();
|
| 2190 |
|
|
while (tmp != -1) {
|
| 2191 |
|
|
currentCharacter = (char)tmp;
|
| 2192 |
2098
|
jones
|
//in a comment
|
| 2193 |
|
|
if (currentCharacter == '-' && previousCharacter == '-'
|
| 2194 |
|
|
&& secondPreviousCharacter == '!'
|
| 2195 |
|
|
&& thirdPreviousCharacter == '<') {
|
| 2196 |
|
|
comment = true;
|
| 2197 |
|
|
}
|
| 2198 |
|
|
//out of comment
|
| 2199 |
|
|
if (comment && currentCharacter == '>' && previousCharacter == '-'
|
| 2200 |
|
|
&& secondPreviousCharacter == '-') {
|
| 2201 |
|
|
comment = false;
|
| 2202 |
|
|
}
|
| 2203 |
68
|
higgins
|
|
| 2204 |
3002
|
sgarg
|
//in a processingInstruction
|
| 2205 |
|
|
if (currentCharacter == '?' && previousCharacter == '<') {
|
| 2206 |
|
|
processingInstruction = true;
|
| 2207 |
|
|
}
|
| 2208 |
|
|
|
| 2209 |
|
|
//out of processingInstruction
|
| 2210 |
|
|
if (processingInstruction && currentCharacter == '>'
|
| 2211 |
|
|
&& previousCharacter == '?') {
|
| 2212 |
|
|
processingInstruction = false;
|
| 2213 |
|
|
}
|
| 2214 |
|
|
|
| 2215 |
|
|
//this is not comment or a processingInstruction
|
| 2216 |
|
|
if (currentCharacter != '!' && previousCharacter == '<'
|
| 2217 |
|
|
&& !comment && !processingInstruction) {
|
| 2218 |
2098
|
jones
|
count++;
|
| 2219 |
|
|
}
|
| 2220 |
3002
|
sgarg
|
|
| 2221 |
2098
|
jones
|
// get target line
|
| 2222 |
|
|
if (count == TARGETNUM && currentCharacter != '>') {
|
| 2223 |
|
|
buffer.append(currentCharacter);
|
| 2224 |
|
|
}
|
| 2225 |
|
|
if (count == TARGETNUM && currentCharacter == '>') {
|
| 2226 |
|
|
break;
|
| 2227 |
|
|
}
|
| 2228 |
|
|
thirdPreviousCharacter = secondPreviousCharacter;
|
| 2229 |
|
|
secondPreviousCharacter = previousCharacter;
|
| 2230 |
|
|
previousCharacter = currentCharacter;
|
| 2231 |
2268
|
sgarg
|
tmp = xml.read();
|
| 2232 |
2098
|
jones
|
}
|
| 2233 |
|
|
secondLine = buffer.toString();
|
| 2234 |
2753
|
jones
|
logMetacat.debug("the second line string is: " + secondLine);
|
| 2235 |
2663
|
sgarg
|
|
| 2236 |
2098
|
jones
|
xml.reset();
|
| 2237 |
|
|
return secondLine;
|
| 2238 |
|
|
}
|
| 2239 |
253
|
jones
|
|
| 2240 |
2711
|
sgarg
|
private String getPrefix(String schemaLine)
|
| 2241 |
|
|
{
|
| 2242 |
2753
|
jones
|
Logger logMetacat = Logger.getLogger(MetaCatServlet.class);
|
| 2243 |
2922
|
jones
|
String prefix = null;
|
| 2244 |
3002
|
sgarg
|
|
| 2245 |
2922
|
jones
|
if(schemaLine.indexOf(" ") > 0){
|
| 2246 |
|
|
String rootElement = "";
|
| 2247 |
|
|
try {
|
| 2248 |
|
|
rootElement = schemaLine.substring(0, schemaLine.indexOf(" "));
|
| 2249 |
|
|
} catch (StringIndexOutOfBoundsException sioobe) {
|
| 2250 |
|
|
rootElement = schemaLine;
|
| 2251 |
|
|
}
|
| 2252 |
|
|
|
| 2253 |
|
|
logMetacat.debug("rootElement:" + rootElement);
|
| 2254 |
2711
|
sgarg
|
|
| 2255 |
2922
|
jones
|
if(rootElement.indexOf(":") > 0){
|
| 2256 |
|
|
prefix = rootElement.substring(rootElement.indexOf(":") + 1,
|
| 2257 |
|
|
rootElement.length());
|
| 2258 |
|
|
}
|
| 2259 |
3002
|
sgarg
|
|
| 2260 |
2922
|
jones
|
if(prefix != null){
|
| 2261 |
|
|
return prefix.trim();
|
| 2262 |
|
|
}
|
| 2263 |
|
|
}
|
| 2264 |
|
|
return null;
|
| 2265 |
2711
|
sgarg
|
}
|
| 2266 |
|
|
|
| 2267 |
2098
|
jones
|
/**
|
| 2268 |
|
|
* Handle the database delete request and delete an XML document from the
|
| 2269 |
|
|
* database connection
|
| 2270 |
|
|
*/
|
| 2271 |
|
|
private void handleDeleteAction(PrintWriter out, Hashtable params,
|
| 2272 |
2169
|
sgarg
|
HttpServletRequest request, HttpServletResponse response,
|
| 2273 |
2102
|
jones
|
String user, String[] groups)
|
| 2274 |
2098
|
jones
|
{
|
| 2275 |
2753
|
jones
|
Logger logMetacat = Logger.getLogger(MetaCatServlet.class);
|
| 2276 |
2098
|
jones
|
String[] docid = (String[]) params.get("docid");
|
| 2277 |
1360
|
tao
|
|
| 2278 |
2251
|
sgarg
|
if(docid == null){
|
| 2279 |
|
|
response.setContentType("text/xml");
|
| 2280 |
|
|
out.println("<?xml version=\"1.0\"?>");
|
| 2281 |
|
|
out.println("<error>");
|
| 2282 |
2252
|
sgarg
|
out.println("Docid not specified.");
|
| 2283 |
2251
|
sgarg
|
out.println("</error>");
|
| 2284 |
2668
|
sgarg
|
logMetacat.error("Docid not specified for the document to be deleted.");
|
| 2285 |
2251
|
sgarg
|
} else {
|
| 2286 |
1360
|
tao
|
|
| 2287 |
2251
|
sgarg
|
// delete the document from the database
|
| 2288 |
2098
|
jones
|
try {
|
| 2289 |
2251
|
sgarg
|
|
| 2290 |
|
|
try {
|
| 2291 |
2298
|
tao
|
// null means notify server is null
|
| 2292 |
|
|
DocumentImpl.delete(docid[0], user, groups, null);
|
| 2293 |
2251
|
sgarg
|
EventLog.getInstance().log(request.getRemoteAddr(),
|
| 2294 |
|
|
user, docid[0], "delete");
|
| 2295 |
|
|
response.setContentType("text/xml");
|
| 2296 |
|
|
out.println("<?xml version=\"1.0\"?>");
|
| 2297 |
|
|
out.println("<success>");
|
| 2298 |
|
|
out.println("Document deleted.");
|
| 2299 |
|
|
out.println("</success>");
|
| 2300 |
2753
|
jones
|
logMetacat.info("Document deleted.");
|
| 2301 |
2251
|
sgarg
|
}
|
| 2302 |
|
|
catch (AccessionNumberException ane) {
|
| 2303 |
|
|
response.setContentType("text/xml");
|
| 2304 |
|
|
out.println("<?xml version=\"1.0\"?>");
|
| 2305 |
|
|
out.println("<error>");
|
| 2306 |
2253
|
sgarg
|
//out.println("Error deleting document!!!");
|
| 2307 |
2251
|
sgarg
|
out.println(ane.getMessage());
|
| 2308 |
|
|
out.println("</error>");
|
| 2309 |
2668
|
sgarg
|
logMetacat.error("Document could not be deleted: "
|
| 2310 |
|
|
+ ane.getMessage());
|
| 2311 |
2251
|
sgarg
|
}
|
| 2312 |
|
|
}
|
| 2313 |
|
|
catch (Exception e) {
|
| 2314 |
2098
|
jones
|
response.setContentType("text/xml");
|
| 2315 |
|
|
out.println("<?xml version=\"1.0\"?>");
|
| 2316 |
|
|
out.println("<error>");
|
| 2317 |
2251
|
sgarg
|
out.println(e.getMessage());
|
| 2318 |
2098
|
jones
|
out.println("</error>");
|
| 2319 |
2668
|
sgarg
|
logMetacat.error("Document could not be deleted: "
|
| 2320 |
|
|
+ e.getMessage());
|
| 2321 |
2098
|
jones
|
}
|
| 2322 |
|
|
}
|
| 2323 |
1292
|
tao
|
}
|
| 2324 |
1360
|
tao
|
|
| 2325 |
2098
|
jones
|
/**
|
| 2326 |
|
|
* Handle the validation request and return the results to the requestor
|
| 2327 |
|
|
*/
|
| 2328 |
|
|
private void handleValidateAction(PrintWriter out, Hashtable params)
|
| 2329 |
1292
|
tao
|
{
|
| 2330 |
1360
|
tao
|
|
| 2331 |
2098
|
jones
|
// Get the document indicated
|
| 2332 |
|
|
String valtext = null;
|
| 2333 |
|
|
DBConnection dbConn = null;
|
| 2334 |
|
|
int serialNumber = -1;
|
| 2335 |
1292
|
tao
|
|
| 2336 |
2098
|
jones
|
try {
|
| 2337 |
|
|
valtext = ((String[]) params.get("valtext"))[0];
|
| 2338 |
|
|
} catch (Exception nullpe) {
|
| 2339 |
1360
|
tao
|
|
| 2340 |
2098
|
jones
|
String docid = null;
|
| 2341 |
|
|
try {
|
| 2342 |
|
|
// Find the document id number
|
| 2343 |
|
|
docid = ((String[]) params.get("docid"))[0];
|
| 2344 |
1360
|
tao
|
|
| 2345 |
2098
|
jones
|
// Get the document indicated from the db
|
| 2346 |
|
|
DocumentImpl xmldoc = new DocumentImpl(docid);
|
| 2347 |
|
|
valtext = xmldoc.toString();
|
| 2348 |
688
|
bojilova
|
|
| 2349 |
2098
|
jones
|
} catch (NullPointerException npe) {
|
| 2350 |
1360
|
tao
|
|
| 2351 |
2098
|
jones
|
out.println("<error>Error getting document ID: " + docid
|
| 2352 |
|
|
+ "</error>");
|
| 2353 |
|
|
//if ( conn != null ) { util.returnConnection(conn); }
|
| 2354 |
|
|
return;
|
| 2355 |
|
|
} catch (Exception e) {
|
| 2356 |
688
|
bojilova
|
|
| 2357 |
2098
|
jones
|
out.println(e.getMessage());
|
| 2358 |
|
|
}
|
| 2359 |
|
|
}
|
| 2360 |
688
|
bojilova
|
|
| 2361 |
2098
|
jones
|
try {
|
| 2362 |
|
|
// get a connection from the pool
|
| 2363 |
|
|
dbConn = DBConnectionPool
|
| 2364 |
|
|
.getDBConnection("MetaCatServlet.handleValidateAction");
|
| 2365 |
|
|
serialNumber = dbConn.getCheckOutSerialNumber();
|
| 2366 |
2752
|
jones
|
DBValidate valobj = new DBValidate(dbConn);
|
| 2367 |
2098
|
jones
|
boolean valid = valobj.validateString(valtext);
|
| 2368 |
1360
|
tao
|
|
| 2369 |
2098
|
jones
|
// set content type and other response header fields first
|
| 2370 |
688
|
bojilova
|
|
| 2371 |
2098
|
jones
|
out.println(valobj.returnErrors());
|
| 2372 |
731
|
bojilova
|
|
| 2373 |
2098
|
jones
|
} catch (NullPointerException npe2) {
|
| 2374 |
|
|
// set content type and other response header fields first
|
| 2375 |
1360
|
tao
|
|
| 2376 |
2098
|
jones
|
out.println("<error>Error validating document.</error>");
|
| 2377 |
|
|
} catch (Exception e) {
|
| 2378 |
731
|
bojilova
|
|
| 2379 |
2098
|
jones
|
out.println(e.getMessage());
|
| 2380 |
|
|
} finally {
|
| 2381 |
|
|
// Return db connection
|
| 2382 |
|
|
DBConnectionPool.returnDBConnection(dbConn, serialNumber);
|
| 2383 |
|
|
}
|
| 2384 |
|
|
}
|
| 2385 |
1360
|
tao
|
|
| 2386 |
2098
|
jones
|
/**
|
| 2387 |
|
|
* Handle "getrevsionanddoctype" action Given a docid, return it's current
|
| 2388 |
|
|
* revision and doctype from data base The output is String look like
|
| 2389 |
|
|
* "rev;doctype"
|
| 2390 |
|
|
*/
|
| 2391 |
|
|
private void handleGetRevisionAndDocTypeAction(PrintWriter out,
|
| 2392 |
|
|
Hashtable params)
|
| 2393 |
|
|
{
|
| 2394 |
|
|
// To store doc parameter
|
| 2395 |
|
|
String[] docs = new String[10];
|
| 2396 |
|
|
// Store a single doc id
|
| 2397 |
|
|
String givenDocId = null;
|
| 2398 |
|
|
// Get docid from parameters
|
| 2399 |
|
|
if (params.containsKey("docid")) {
|
| 2400 |
|
|
docs = (String[]) params.get("docid");
|
| 2401 |
|
|
}
|
| 2402 |
|
|
// Get first docid form string array
|
| 2403 |
|
|
givenDocId = docs[0];
|
| 2404 |
731
|
bojilova
|
|
| 2405 |
2098
|
jones
|
try {
|
| 2406 |
|
|
// Make sure there is a docid
|
| 2407 |
|
|
if (givenDocId == null || givenDocId.equals("")) { throw new Exception(
|
| 2408 |
|
|
"User didn't specify docid!"); }//if
|
| 2409 |
1360
|
tao
|
|
| 2410 |
2098
|
jones
|
// Create a DBUtil object
|
| 2411 |
|
|
DBUtil dbutil = new DBUtil();
|
| 2412 |
|
|
// Get a rev and doctype
|
| 2413 |
|
|
String revAndDocType = dbutil
|
| 2414 |
|
|
.getCurrentRevisionAndDocTypeForGivenDocument(givenDocId);
|
| 2415 |
|
|
out.println(revAndDocType);
|
| 2416 |
731
|
bojilova
|
|
| 2417 |
2098
|
jones
|
} catch (Exception e) {
|
| 2418 |
|
|
// Handle exception
|
| 2419 |
|
|
out.println("<?xml version=\"1.0\"?>");
|
| 2420 |
|
|
out.println("<error>");
|
| 2421 |
|
|
out.println(e.getMessage());
|
| 2422 |
|
|
out.println("</error>");
|
| 2423 |
|
|
}
|
| 2424 |
302
|
bojilova
|
|
| 2425 |
2098
|
jones
|
}
|
| 2426 |
1360
|
tao
|
|
| 2427 |
2098
|
jones
|
/**
|
| 2428 |
|
|
* Handle "getaccesscontrol" action. Read Access Control List from db
|
| 2429 |
|
|
* connection in XML format
|
| 2430 |
|
|
*/
|
| 2431 |
|
|
private void handleGetAccessControlAction(PrintWriter out,
|
| 2432 |
|
|
Hashtable params, HttpServletResponse response, String username,
|
| 2433 |
|
|
String[] groupnames)
|
| 2434 |
|
|
{
|
| 2435 |
|
|
DBConnection dbConn = null;
|
| 2436 |
|
|
int serialNumber = -1;
|
| 2437 |
|
|
String docid = ((String[]) params.get("docid"))[0];
|
| 2438 |
302
|
bojilova
|
|
| 2439 |
2098
|
jones
|
try {
|
| 2440 |
1360
|
tao
|
|
| 2441 |
2098
|
jones
|
// get connection from the pool
|
| 2442 |
|
|
dbConn = DBConnectionPool
|
| 2443 |
|
|
.getDBConnection("MetaCatServlet.handleGetAccessControlAction");
|
| 2444 |
|
|
serialNumber = dbConn.getCheckOutSerialNumber();
|
| 2445 |
|
|
AccessControlList aclobj = new AccessControlList(dbConn);
|
| 2446 |
|
|
String acltext = aclobj.getACL(docid, username, groupnames);
|
| 2447 |
|
|
out.println(acltext);
|
| 2448 |
302
|
bojilova
|
|
| 2449 |
2098
|
jones
|
} catch (Exception e) {
|
| 2450 |
|
|
out.println("<?xml version=\"1.0\"?>");
|
| 2451 |
|
|
out.println("<error>");
|
| 2452 |
|
|
out.println(e.getMessage());
|
| 2453 |
|
|
out.println("</error>");
|
| 2454 |
|
|
} finally {
|
| 2455 |
|
|
// Retrun db connection to pool
|
| 2456 |
|
|
DBConnectionPool.returnDBConnection(dbConn, serialNumber);
|
| 2457 |
|
|
}
|
| 2458 |
1360
|
tao
|
}
|
| 2459 |
|
|
|
| 2460 |
2098
|
jones
|
/**
|
| 2461 |
|
|
* Handle the "getprincipals" action. Read all principals from
|
| 2462 |
|
|
* authentication scheme in XML format
|
| 2463 |
|
|
*/
|
| 2464 |
|
|
private void handleGetPrincipalsAction(PrintWriter out, String user,
|
| 2465 |
|
|
String password)
|
| 2466 |
|
|
{
|
| 2467 |
|
|
try {
|
| 2468 |
|
|
AuthSession auth = new AuthSession();
|
| 2469 |
|
|
String principals = auth.getPrincipals(user, password);
|
| 2470 |
|
|
out.println(principals);
|
| 2471 |
302
|
bojilova
|
|
| 2472 |
2098
|
jones
|
} catch (Exception e) {
|
| 2473 |
|
|
out.println("<?xml version=\"1.0\"?>");
|
| 2474 |
|
|
out.println("<error>");
|
| 2475 |
|
|
out.println(e.getMessage());
|
| 2476 |
|
|
out.println("</error>");
|
| 2477 |
|
|
}
|
| 2478 |
|
|
}
|
| 2479 |
699
|
bojilova
|
|
| 2480 |
2098
|
jones
|
/**
|
| 2481 |
|
|
* Handle "getdoctypes" action. Read all doctypes from db connection in XML
|
| 2482 |
|
|
* format
|
| 2483 |
|
|
*/
|
| 2484 |
|
|
private void handleGetDoctypesAction(PrintWriter out, Hashtable params,
|
| 2485 |
|
|
HttpServletResponse response)
|
| 2486 |
|
|
{
|
| 2487 |
|
|
try {
|
| 2488 |
|
|
DBUtil dbutil = new DBUtil();
|
| 2489 |
|
|
String doctypes = dbutil.readDoctypes();
|
| 2490 |
|
|
out.println(doctypes);
|
| 2491 |
|
|
} catch (Exception e) {
|
| 2492 |
|
|
out.println("<?xml version=\"1.0\"?>");
|
| 2493 |
|
|
out.println("<error>");
|
| 2494 |
|
|
out.println(e.getMessage());
|
| 2495 |
|
|
out.println("</error>");
|
| 2496 |
|
|
}
|
| 2497 |
|
|
}
|
| 2498 |
1360
|
tao
|
|
| 2499 |
2098
|
jones
|
/**
|
| 2500 |
|
|
* Handle the "getdtdschema" action. Read DTD or Schema file for a given
|
| 2501 |
|
|
* doctype from Metacat catalog system
|
| 2502 |
|
|
*/
|
| 2503 |
|
|
private void handleGetDTDSchemaAction(PrintWriter out, Hashtable params,
|
| 2504 |
|
|
HttpServletResponse response)
|
| 2505 |
|
|
{
|
| 2506 |
699
|
bojilova
|
|
| 2507 |
2098
|
jones
|
String doctype = null;
|
| 2508 |
|
|
String[] doctypeArr = (String[]) params.get("doctype");
|
| 2509 |
699
|
bojilova
|
|
| 2510 |
2098
|
jones
|
// get only the first doctype specified in the list of doctypes
|
| 2511 |
|
|
// it could be done for all doctypes in that list
|
| 2512 |
|
|
if (doctypeArr != null) {
|
| 2513 |
|
|
doctype = ((String[]) params.get("doctype"))[0];
|
| 2514 |
|
|
}
|
| 2515 |
699
|
bojilova
|
|
| 2516 |
2098
|
jones
|
try {
|
| 2517 |
|
|
DBUtil dbutil = new DBUtil();
|
| 2518 |
|
|
String dtdschema = dbutil.readDTDSchema(doctype);
|
| 2519 |
|
|
out.println(dtdschema);
|
| 2520 |
1360
|
tao
|
|
| 2521 |
2098
|
jones
|
} catch (Exception e) {
|
| 2522 |
|
|
out.println("<?xml version=\"1.0\"?>");
|
| 2523 |
|
|
out.println("<error>");
|
| 2524 |
|
|
out.println(e.getMessage());
|
| 2525 |
|
|
out.println("</error>");
|
| 2526 |
|
|
}
|
| 2527 |
699
|
bojilova
|
|
| 2528 |
1360
|
tao
|
}
|
| 2529 |
|
|
|
| 2530 |
2098
|
jones
|
/**
|
| 2531 |
|
|
* Handle the "getlastdocid" action. Get the latest docid with rev number
|
| 2532 |
|
|
* from db connection in XML format
|
| 2533 |
|
|
*/
|
| 2534 |
|
|
private void handleGetMaxDocidAction(PrintWriter out, Hashtable params,
|
| 2535 |
|
|
HttpServletResponse response)
|
| 2536 |
|
|
{
|
| 2537 |
699
|
bojilova
|
|
| 2538 |
2098
|
jones
|
String scope = ((String[]) params.get("scope"))[0];
|
| 2539 |
|
|
if (scope == null) {
|
| 2540 |
|
|
scope = ((String[]) params.get("username"))[0];
|
| 2541 |
|
|
}
|
| 2542 |
793
|
bojilova
|
|
| 2543 |
2098
|
jones
|
try {
|
| 2544 |
1217
|
tao
|
|
| 2545 |
2098
|
jones
|
DBUtil dbutil = new DBUtil();
|
| 2546 |
|
|
String lastDocid = dbutil.getMaxDocid(scope);
|
| 2547 |
|
|
out.println("<?xml version=\"1.0\"?>");
|
| 2548 |
|
|
out.println("<lastDocid>");
|
| 2549 |
|
|
out.println(" <scope>" + scope + "</scope>");
|
| 2550 |
|
|
out.println(" <docid>" + lastDocid + "</docid>");
|
| 2551 |
|
|
out.println("</lastDocid>");
|
| 2552 |
793
|
bojilova
|
|
| 2553 |
2098
|
jones
|
} catch (Exception e) {
|
| 2554 |
|
|
out.println("<?xml version=\"1.0\"?>");
|
| 2555 |
|
|
out.println("<error>");
|
| 2556 |
|
|
out.println(e.getMessage());
|
| 2557 |
|
|
out.println("</error>");
|
| 2558 |
|
|
}
|
| 2559 |
1217
|
tao
|
}
|
| 2560 |
1360
|
tao
|
|
| 2561 |
2098
|
jones
|
/**
|
| 2562 |
2113
|
jones
|
* Print a report from the event log based on filter parameters passed in
|
| 2563 |
|
|
* from the web.
|
| 2564 |
2169
|
sgarg
|
*
|
| 2565 |
2113
|
jones
|
* @param params the parameters from the web request
|
| 2566 |
|
|
* @param request the http request object for getting request details
|
| 2567 |
|
|
* @param response the http response object for writing output
|
| 2568 |
|
|
*/
|
| 2569 |
|
|
private void handleGetLogAction(Hashtable params, HttpServletRequest request,
|
| 2570 |
2558
|
sgarg
|
HttpServletResponse response, String username, String[] groups)
|
| 2571 |
2113
|
jones
|
{
|
| 2572 |
2753
|
jones
|
Logger logMetacat = Logger.getLogger(MetaCatServlet.class);
|
| 2573 |
2113
|
jones
|
try {
|
| 2574 |
2312
|
jones
|
response.setContentType("text/xml");
|
| 2575 |
|
|
PrintWriter out = response.getWriter();
|
| 2576 |
2347
|
sgarg
|
|
| 2577 |
2312
|
jones
|
// Check that the user is authenticated as an administrator account
|
| 2578 |
2558
|
sgarg
|
if (!MetaCatUtil.isAdministrator(username, groups)) {
|
| 2579 |
2312
|
jones
|
out.print("<error>");
|
| 2580 |
2347
|
sgarg
|
out.print("The user \"" + username +
|
| 2581 |
2312
|
jones
|
"\" is not authorized for this action.");
|
| 2582 |
|
|
out.print("</error>");
|
| 2583 |
|
|
return;
|
| 2584 |
2113
|
jones
|
}
|
| 2585 |
2347
|
sgarg
|
|
| 2586 |
2312
|
jones
|
// Get all of the parameters in the correct formats
|
| 2587 |
|
|
String[] ipAddress = (String[])params.get("ipaddress");
|
| 2588 |
|
|
String[] principal = (String[])params.get("principal");
|
| 2589 |
|
|
String[] docid = (String[])params.get("docid");
|
| 2590 |
|
|
String[] event = (String[])params.get("event");
|
| 2591 |
|
|
String[] startArray = (String[]) params.get("start");
|
| 2592 |
|
|
String[] endArray = (String[]) params.get("end");
|
| 2593 |
|
|
String start = null;
|
| 2594 |
|
|
String end = null;
|
| 2595 |
|
|
if (startArray != null) {
|
| 2596 |
|
|
start = startArray[0];
|
| 2597 |
|
|
}
|
| 2598 |
|
|
if (endArray != null) {
|
| 2599 |
|
|
end = endArray[0];
|
| 2600 |
|
|
}
|
| 2601 |
|
|
Timestamp startDate = null;
|
| 2602 |
|
|
Timestamp endDate = null;
|
| 2603 |
|
|
SimpleDateFormat format = new SimpleDateFormat("yyyy-MM-dd HH:mm:ss");
|
| 2604 |
|
|
try {
|
| 2605 |
|
|
if (start != null) {
|
| 2606 |
|
|
startDate = new Timestamp((format.parse(start)).getTime());
|
| 2607 |
|
|
}
|
| 2608 |
|
|
if (end != null) {
|
| 2609 |
|
|
endDate = new Timestamp((format.parse(end)).getTime());
|
| 2610 |
|
|
}
|
| 2611 |
|
|
} catch (ParseException e) {
|
| 2612 |
|
|
System.out.println("Failed to created Timestamp from input.");
|
| 2613 |
|
|
}
|
| 2614 |
2347
|
sgarg
|
|
| 2615 |
2312
|
jones
|
// Request the report by passing the filter parameters
|
| 2616 |
|
|
out.println(EventLog.getInstance().getReport(ipAddress, principal,
|
| 2617 |
|
|
docid, event, startDate, endDate));
|
| 2618 |
|
|
out.close();
|
| 2619 |
|
|
} catch (IOException e) {
|
| 2620 |
2663
|
sgarg
|
logMetacat.error(
|
| 2621 |
|
|
"Could not open http response for writing: " + e.getMessage());
|
| 2622 |
2113
|
jones
|
}
|
| 2623 |
2312
|
jones
|
}
|
| 2624 |
2169
|
sgarg
|
|
| 2625 |
2312
|
jones
|
/**
|
| 2626 |
|
|
* Rebuild the index for one or more documents. If the docid parameter is
|
| 2627 |
|
|
* provided, rebuild for just that one document or list of documents. If
|
| 2628 |
|
|
* not, then rebuild the index for all documents in the xml_documents
|
| 2629 |
|
|
* table.
|
| 2630 |
|
|
*
|
| 2631 |
|
|
* @param params the parameters from the web request
|
| 2632 |
|
|
* @param request the http request object for getting request details
|
| 2633 |
|
|
* @param response the http response object for writing output
|
| 2634 |
|
|
* @param username the username of the authenticated user
|
| 2635 |
|
|
*/
|
| 2636 |
2347
|
sgarg
|
private void handleBuildIndexAction(Hashtable params,
|
| 2637 |
2312
|
jones
|
HttpServletRequest request, HttpServletResponse response,
|
| 2638 |
2558
|
sgarg
|
String username, String[] groups)
|
| 2639 |
2312
|
jones
|
{
|
| 2640 |
2753
|
jones
|
Logger logMetacat = Logger.getLogger(MetaCatServlet.class);
|
| 2641 |
|
|
|
| 2642 |
2312
|
jones
|
// Get all of the parameters in the correct formats
|
| 2643 |
|
|
String[] docid = (String[])params.get("docid");
|
| 2644 |
|
|
|
| 2645 |
|
|
// Rebuild the indices for appropriate documents
|
| 2646 |
2113
|
jones
|
try {
|
| 2647 |
|
|
response.setContentType("text/xml");
|
| 2648 |
|
|
PrintWriter out = response.getWriter();
|
| 2649 |
2347
|
sgarg
|
|
| 2650 |
2312
|
jones
|
// Check that the user is authenticated as an administrator account
|
| 2651 |
2558
|
sgarg
|
if (!MetaCatUtil.isAdministrator(username, groups)) {
|
| 2652 |
2312
|
jones
|
out.print("<error>");
|
| 2653 |
2347
|
sgarg
|
out.print("The user \"" + username +
|
| 2654 |
2312
|
jones
|
"\" is not authorized for this action.");
|
| 2655 |
|
|
out.print("</error>");
|
| 2656 |
|
|
return;
|
| 2657 |
|
|
}
|
| 2658 |
|
|
|
| 2659 |
|
|
// Process the documents
|
| 2660 |
|
|
out.println("<success>");
|
| 2661 |
|
|
if (docid == null || docid.length == 0) {
|
| 2662 |
|
|
// Process all of the documents
|
| 2663 |
|
|
try {
|
| 2664 |
|
|
Vector documents = getDocumentList();
|
| 2665 |
|
|
Iterator it = documents.iterator();
|
| 2666 |
|
|
while (it.hasNext()) {
|
| 2667 |
|
|
String id = (String) it.next();
|
| 2668 |
|
|
buildDocumentIndex(id, out);
|
| 2669 |
|
|
}
|
| 2670 |
|
|
} catch (SQLException se) {
|
| 2671 |
|
|
out.print("<error>");
|
| 2672 |
|
|
out.print(se.getMessage());
|
| 2673 |
|
|
out.println("</error>");
|
| 2674 |
|
|
}
|
| 2675 |
|
|
} else {
|
| 2676 |
|
|
// Only process the requested documents
|
| 2677 |
|
|
for (int i = 0; i < docid.length; i++) {
|
| 2678 |
|
|
buildDocumentIndex(docid[i], out);
|
| 2679 |
|
|
}
|
| 2680 |
|
|
}
|
| 2681 |
|
|
out.println("</success>");
|
| 2682 |
2113
|
jones
|
out.close();
|
| 2683 |
|
|
} catch (IOException e) {
|
| 2684 |
2663
|
sgarg
|
logMetacat.error(
|
| 2685 |
2169
|
sgarg
|
"Could not open http response for writing: "
|
| 2686 |
2663
|
sgarg
|
+ e.getMessage());
|
| 2687 |
2113
|
jones
|
}
|
| 2688 |
|
|
}
|
| 2689 |
2169
|
sgarg
|
|
| 2690 |
2113
|
jones
|
/**
|
| 2691 |
2347
|
sgarg
|
* Build the index for one document by reading the document and
|
| 2692 |
2312
|
jones
|
* calling its buildIndex() method.
|
| 2693 |
|
|
*
|
| 2694 |
|
|
* @param docid the document (with revision) to rebuild
|
| 2695 |
|
|
* @param out the PrintWriter to which output is printed
|
| 2696 |
|
|
*/
|
| 2697 |
|
|
private void buildDocumentIndex(String docid, PrintWriter out)
|
| 2698 |
|
|
{
|
| 2699 |
|
|
try {
|
| 2700 |
|
|
DocumentImpl doc = new DocumentImpl(docid, false);
|
| 2701 |
|
|
doc.buildIndex();
|
| 2702 |
|
|
out.print("<docid>" + docid);
|
| 2703 |
|
|
out.println("</docid>");
|
| 2704 |
|
|
} catch (McdbException me) {
|
| 2705 |
|
|
out.print("<error>");
|
| 2706 |
|
|
out.print(me.getMessage());
|
| 2707 |
|
|
out.println("</error>");
|
| 2708 |
|
|
}
|
| 2709 |
|
|
}
|
| 2710 |
|
|
|
| 2711 |
|
|
/**
|
| 2712 |
2098
|
jones
|
* Handle documents passed to metacat that are encoded using the
|
| 2713 |
|
|
* "multipart/form-data" mime type. This is typically used for uploading
|
| 2714 |
|
|
* data files which may be binary and large.
|
| 2715 |
|
|
*/
|
| 2716 |
|
|
private void handleMultipartForm(HttpServletRequest request,
|
| 2717 |
|
|
HttpServletResponse response)
|
| 2718 |
|
|
{
|
| 2719 |
2753
|
jones
|
Logger logMetacat = Logger.getLogger(MetaCatServlet.class);
|
| 2720 |
2098
|
jones
|
PrintWriter out = null;
|
| 2721 |
|
|
String action = null;
|
| 2722 |
793
|
bojilova
|
|
| 2723 |
2098
|
jones
|
// Parse the multipart form, and save the parameters in a Hashtable and
|
| 2724 |
|
|
// save the FileParts in a hashtable
|
| 2725 |
798
|
jones
|
|
| 2726 |
2098
|
jones
|
Hashtable params = new Hashtable();
|
| 2727 |
|
|
Hashtable fileList = new Hashtable();
|
| 2728 |
|
|
int sizeLimit = (new Integer(MetaCatUtil.getOption("datafilesizelimit")))
|
| 2729 |
|
|
.intValue();
|
| 2730 |
2663
|
sgarg
|
logMetacat.info(
|
| 2731 |
2753
|
jones
|
"The size limit of uploaded data files is: " + sizeLimit);
|
| 2732 |
798
|
jones
|
|
| 2733 |
2098
|
jones
|
try {
|
| 2734 |
|
|
MultipartParser mp = new MultipartParser(request,
|
| 2735 |
|
|
sizeLimit * 1024 * 1024);
|
| 2736 |
|
|
Part part;
|
| 2737 |
|
|
while ((part = mp.readNextPart()) != null) {
|
| 2738 |
|
|
String name = part.getName();
|
| 2739 |
798
|
jones
|
|
| 2740 |
2098
|
jones
|
if (part.isParam()) {
|
| 2741 |
|
|
// it's a parameter part
|
| 2742 |
|
|
ParamPart paramPart = (ParamPart) part;
|
| 2743 |
|
|
String value = paramPart.getStringValue();
|
| 2744 |
|
|
params.put(name, value);
|
| 2745 |
|
|
if (name.equals("action")) {
|
| 2746 |
|
|
action = value;
|
| 2747 |
|
|
}
|
| 2748 |
|
|
} else if (part.isFile()) {
|
| 2749 |
|
|
// it's a file part
|
| 2750 |
|
|
FilePart filePart = (FilePart) part;
|
| 2751 |
|
|
fileList.put(name, filePart);
|
| 2752 |
798
|
jones
|
|
| 2753 |
2098
|
jones
|
// Stop once the first file part is found, otherwise going
|
| 2754 |
|
|
// onto the
|
| 2755 |
|
|
// next part prevents access to the file contents. So...for
|
| 2756 |
|
|
// upload
|
| 2757 |
|
|
// to work, the datafile must be the last part
|
| 2758 |
|
|
break;
|
| 2759 |
|
|
}
|
| 2760 |
|
|
}
|
| 2761 |
|
|
} catch (IOException ioe) {
|
| 2762 |
|
|
try {
|
| 2763 |
|
|
out = response.getWriter();
|
| 2764 |
|
|
} catch (IOException ioe2) {
|
| 2765 |
2663
|
sgarg
|
logMetacat.fatal("Fatal Error: couldn't get response output stream.");
|
| 2766 |
2098
|
jones
|
}
|
| 2767 |
|
|
out.println("<?xml version=\"1.0\"?>");
|
| 2768 |
|
|
out.println("<error>");
|
| 2769 |
|
|
out.println("Error: problem reading multipart data.");
|
| 2770 |
|
|
out.println("</error>");
|
| 2771 |
798
|
jones
|
}
|
| 2772 |
|
|
|
| 2773 |
2098
|
jones
|
// Get the session information
|
| 2774 |
|
|
String username = null;
|
| 2775 |
|
|
String password = null;
|
| 2776 |
|
|
String[] groupnames = null;
|
| 2777 |
|
|
String sess_id = null;
|
| 2778 |
798
|
jones
|
|
| 2779 |
2098
|
jones
|
// be aware of session expiration on every request
|
| 2780 |
|
|
HttpSession sess = request.getSession(true);
|
| 2781 |
|
|
if (sess.isNew()) {
|
| 2782 |
|
|
// session expired or has not been stored b/w user requests
|
| 2783 |
|
|
username = "public";
|
| 2784 |
|
|
sess.setAttribute("username", username);
|
| 2785 |
|
|
} else {
|
| 2786 |
|
|
username = (String) sess.getAttribute("username");
|
| 2787 |
|
|
password = (String) sess.getAttribute("password");
|
| 2788 |
|
|
groupnames = (String[]) sess.getAttribute("groupnames");
|
| 2789 |
|
|
try {
|
| 2790 |
|
|
sess_id = (String) sess.getId();
|
| 2791 |
|
|
} catch (IllegalStateException ise) {
|
| 2792 |
|
|
System.out
|
| 2793 |
|
|
.println("error in handleMultipartForm: this shouldn't "
|
| 2794 |
|
|
+ "happen: the session should be valid: "
|
| 2795 |
|
|
+ ise.getMessage());
|
| 2796 |
|
|
}
|
| 2797 |
|
|
}
|
| 2798 |
1360
|
tao
|
|
| 2799 |
2098
|
jones
|
// Get the out stream
|
| 2800 |
|
|
try {
|
| 2801 |
|
|
out = response.getWriter();
|
| 2802 |
798
|
jones
|
} catch (IOException ioe2) {
|
| 2803 |
2663
|
sgarg
|
logMetacat.error("Fatal Error: couldn't get response "
|
| 2804 |
|
|
+ "output stream.");
|
| 2805 |
798
|
jones
|
}
|
| 2806 |
1360
|
tao
|
|
| 2807 |
2098
|
jones
|
if (action.equals("upload")) {
|
| 2808 |
|
|
if (username != null && !username.equals("public")) {
|
| 2809 |
|
|
handleUploadAction(request, out, params, fileList, username,
|
| 2810 |
|
|
groupnames);
|
| 2811 |
|
|
} else {
|
| 2812 |
1360
|
tao
|
|
| 2813 |
2098
|
jones
|
out.println("<?xml version=\"1.0\"?>");
|
| 2814 |
|
|
out.println("<error>");
|
| 2815 |
|
|
out.println("Permission denied for " + action);
|
| 2816 |
|
|
out.println("</error>");
|
| 2817 |
|
|
}
|
| 2818 |
|
|
} else {
|
| 2819 |
|
|
/*
|
| 2820 |
|
|
* try { out = response.getWriter(); } catch (IOException ioe2) {
|
| 2821 |
|
|
* System.err.println("Fatal Error: couldn't get response output
|
| 2822 |
|
|
* stream.");
|
| 2823 |
|
|
*/
|
| 2824 |
|
|
out.println("<?xml version=\"1.0\"?>");
|
| 2825 |
|
|
out.println("<error>");
|
| 2826 |
|
|
out.println(
|
| 2827 |
|
|
"Error: action not registered. Please report this error.");
|
| 2828 |
|
|
out.println("</error>");
|
| 2829 |
|
|
}
|
| 2830 |
|
|
out.close();
|
| 2831 |
798
|
jones
|
}
|
| 2832 |
|
|
|
| 2833 |
2098
|
jones
|
/**
|
| 2834 |
|
|
* Handle the upload action by saving the attached file to disk and
|
| 2835 |
|
|
* registering it in the Metacat db
|
| 2836 |
|
|
*/
|
| 2837 |
|
|
private void handleUploadAction(HttpServletRequest request,
|
| 2838 |
|
|
PrintWriter out, Hashtable params, Hashtable fileList,
|
| 2839 |
|
|
String username, String[] groupnames)
|
| 2840 |
1041
|
tao
|
{
|
| 2841 |
2753
|
jones
|
Logger logMetacat = Logger.getLogger(MetaCatServlet.class);
|
| 2842 |
2098
|
jones
|
//PrintWriter out = null;
|
| 2843 |
|
|
//Connection conn = null;
|
| 2844 |
|
|
String action = null;
|
| 2845 |
|
|
String docid = null;
|
| 2846 |
798
|
jones
|
|
| 2847 |
2098
|
jones
|
/*
|
| 2848 |
|
|
* response.setContentType("text/xml"); try { out =
|
| 2849 |
|
|
* response.getWriter(); } catch (IOException ioe2) {
|
| 2850 |
|
|
* System.err.println("Fatal Error: couldn't get response output
|
| 2851 |
|
|
* stream.");
|
| 2852 |
|
|
*/
|
| 2853 |
798
|
jones
|
|
| 2854 |
2098
|
jones
|
if (params.containsKey("docid")) {
|
| 2855 |
|
|
docid = (String) params.get("docid");
|
| 2856 |
|
|
}
|
| 2857 |
798
|
jones
|
|
| 2858 |
2098
|
jones
|
// Make sure we have a docid and datafile
|
| 2859 |
|
|
if (docid != null && fileList.containsKey("datafile")) {
|
| 2860 |
2753
|
jones
|
logMetacat.info("Uploading data docid: " + docid);
|
| 2861 |
2098
|
jones
|
// Get a reference to the file part of the form
|
| 2862 |
|
|
FilePart filePart = (FilePart) fileList.get("datafile");
|
| 2863 |
|
|
String fileName = filePart.getFileName();
|
| 2864 |
2753
|
jones
|
logMetacat.info("Uploading filename: " + fileName);
|
| 2865 |
2098
|
jones
|
// Check if the right file existed in the uploaded data
|
| 2866 |
|
|
if (fileName != null) {
|
| 2867 |
1360
|
tao
|
|
| 2868 |
2098
|
jones
|
try {
|
| 2869 |
2663
|
sgarg
|
//logMetacat.info("Upload datafile " + docid
|
| 2870 |
2098
|
jones
|
// +"...", 10);
|
| 2871 |
|
|
//If document get lock data file grant
|
| 2872 |
|
|
if (DocumentImpl.getDataFileLockGrant(docid)) {
|
| 2873 |
|
|
// Save the data file to disk using "docid" as the name
|
| 2874 |
2752
|
jones
|
String datafilepath = MetaCatUtil.getOption("datafilepath");
|
| 2875 |
|
|
File dataDirectory = new File(datafilepath);
|
| 2876 |
2098
|
jones
|
dataDirectory.mkdirs();
|
| 2877 |
2749
|
tao
|
File newFile = null;
|
| 2878 |
|
|
long size = 0;
|
| 2879 |
|
|
try
|
| 2880 |
|
|
{
|
| 2881 |
|
|
newFile = new File(dataDirectory, docid);
|
| 2882 |
|
|
size = filePart.writeTo(newFile);
|
| 2883 |
|
|
|
| 2884 |
|
|
// register the file in the database (which generates
|
| 2885 |
|
|
// an exception
|
| 2886 |
|
|
//if the docid is not acceptable or other untoward
|
| 2887 |
|
|
// things happen
|
| 2888 |
|
|
DocumentImpl.registerDocument(fileName, "BIN", docid,
|
| 2889 |
|
|
username, groupnames);
|
| 2890 |
|
|
}
|
| 2891 |
|
|
catch (Exception ee)
|
| 2892 |
|
|
{
|
| 2893 |
|
|
//detelte the file to create
|
| 2894 |
|
|
newFile.delete();
|
| 2895 |
|
|
throw ee;
|
| 2896 |
|
|
}
|
| 2897 |
1360
|
tao
|
|
| 2898 |
2169
|
sgarg
|
EventLog.getInstance().log(request.getRemoteAddr(),
|
| 2899 |
2102
|
jones
|
username, docid, "upload");
|
| 2900 |
2098
|
jones
|
// Force replication this data file
|
| 2901 |
|
|
// To data file, "insert" and update is same
|
| 2902 |
|
|
// The fourth parameter is null. Because it is
|
| 2903 |
|
|
// notification server
|
| 2904 |
|
|
// and this method is in MetaCatServerlet. It is
|
| 2905 |
|
|
// original command,
|
| 2906 |
|
|
// not get force replication info from another metacat
|
| 2907 |
|
|
ForceReplicationHandler frh = new ForceReplicationHandler(
|
| 2908 |
|
|
docid, "insert", false, null);
|
| 2909 |
1360
|
tao
|
|
| 2910 |
2098
|
jones
|
// set content type and other response header fields
|
| 2911 |
|
|
// first
|
| 2912 |
|
|
out.println("<?xml version=\"1.0\"?>");
|
| 2913 |
|
|
out.println("<success>");
|
| 2914 |
|
|
out.println("<docid>" + docid + "</docid>");
|
| 2915 |
|
|
out.println("<size>" + size + "</size>");
|
| 2916 |
|
|
out.println("</success>");
|
| 2917 |
|
|
}
|
| 2918 |
|
|
|
| 2919 |
|
|
} catch (Exception e) {
|
| 2920 |
2749
|
tao
|
|
| 2921 |
2098
|
jones
|
out.println("<?xml version=\"1.0\"?>");
|
| 2922 |
|
|
out.println("<error>");
|
| 2923 |
|
|
out.println(e.getMessage());
|
| 2924 |
|
|
out.println("</error>");
|
| 2925 |
|
|
}
|
| 2926 |
|
|
} else {
|
| 2927 |
|
|
// the field did not contain a file
|
| 2928 |
|
|
out.println("<?xml version=\"1.0\"?>");
|
| 2929 |
|
|
out.println("<error>");
|
| 2930 |
|
|
out.println("The uploaded data did not contain a valid file.");
|
| 2931 |
|
|
out.println("</error>");
|
| 2932 |
|
|
}
|
| 2933 |
|
|
} else {
|
| 2934 |
|
|
// Error bcse docid missing or file missing
|
| 2935 |
|
|
out.println("<?xml version=\"1.0\"?>");
|
| 2936 |
|
|
out.println("<error>");
|
| 2937 |
|
|
out.println("The uploaded data did not contain a valid docid "
|
| 2938 |
|
|
+ "or valid file.");
|
| 2939 |
|
|
out.println("</error>");
|
| 2940 |
798
|
jones
|
}
|
| 2941 |
2098
|
jones
|
}
|
| 2942 |
1360
|
tao
|
|
| 2943 |
2098
|
jones
|
/*
|
| 2944 |
|
|
* A method to handle set access action
|
| 2945 |
|
|
*/
|
| 2946 |
|
|
private void handleSetAccessAction(PrintWriter out, Hashtable params,
|
| 2947 |
|
|
String username)
|
| 2948 |
1041
|
tao
|
{
|
| 2949 |
2753
|
jones
|
Logger logMetacat = Logger.getLogger(MetaCatServlet.class);
|
| 2950 |
2098
|
jones
|
String[] docList = null;
|
| 2951 |
|
|
String[] principalList = null;
|
| 2952 |
|
|
String[] permissionList = null;
|
| 2953 |
|
|
String[] permTypeList = null;
|
| 2954 |
|
|
String[] permOrderList = null;
|
| 2955 |
|
|
String permission = null;
|
| 2956 |
|
|
String permType = null;
|
| 2957 |
|
|
String permOrder = null;
|
| 2958 |
|
|
Vector errorList = new Vector();
|
| 2959 |
|
|
String error = null;
|
| 2960 |
|
|
Vector successList = new Vector();
|
| 2961 |
|
|
String success = null;
|
| 2962 |
1716
|
berkley
|
|
| 2963 |
2098
|
jones
|
// Get parameters
|
| 2964 |
|
|
if (params.containsKey("docid")) {
|
| 2965 |
|
|
docList = (String[]) params.get("docid");
|
| 2966 |
|
|
}
|
| 2967 |
|
|
if (params.containsKey("principal")) {
|
| 2968 |
|
|
principalList = (String[]) params.get("principal");
|
| 2969 |
|
|
}
|
| 2970 |
|
|
if (params.containsKey("permission")) {
|
| 2971 |
|
|
permissionList = (String[]) params.get("permission");
|
| 2972 |
1716
|
berkley
|
|
| 2973 |
2098
|
jones
|
}
|
| 2974 |
|
|
if (params.containsKey("permType")) {
|
| 2975 |
|
|
permTypeList = (String[]) params.get("permType");
|
| 2976 |
1716
|
berkley
|
|
| 2977 |
2098
|
jones
|
}
|
| 2978 |
|
|
if (params.containsKey("permOrder")) {
|
| 2979 |
|
|
permOrderList = (String[]) params.get("permOrder");
|
| 2980 |
1716
|
berkley
|
|
| 2981 |
2098
|
jones
|
}
|
| 2982 |
1716
|
berkley
|
|
| 2983 |
2098
|
jones
|
// Make sure the parameter is not null
|
| 2984 |
|
|
if (docList == null || principalList == null || permTypeList == null
|
| 2985 |
|
|
|| permissionList == null) {
|
| 2986 |
|
|
error = "Please check your parameter list, it should look like: "
|
| 2987 |
|
|
+ "?action=setaccess&docid=pipeline.1.1&principal=public"
|
| 2988 |
|
|
+ "&permission=read&permType=allow&permOrder=allowFirst";
|
| 2989 |
|
|
errorList.addElement(error);
|
| 2990 |
|
|
outputResponse(successList, errorList, out);
|
| 2991 |
|
|
return;
|
| 2992 |
|
|
}
|
| 2993 |
1716
|
berkley
|
|
| 2994 |
2098
|
jones
|
// Only select first element for permission, type and order
|
| 2995 |
|
|
permission = permissionList[0];
|
| 2996 |
|
|
permType = permTypeList[0];
|
| 2997 |
|
|
if (permOrderList != null) {
|
| 2998 |
|
|
permOrder = permOrderList[0];
|
| 2999 |
|
|
}
|
| 3000 |
1716
|
berkley
|
|
| 3001 |
2098
|
jones
|
// Get package doctype set
|
| 3002 |
|
|
Vector packageSet = MetaCatUtil.getOptionList(MetaCatUtil
|
| 3003 |
|
|
.getOption("packagedoctypeset"));
|
| 3004 |
|
|
//debug
|
| 3005 |
|
|
if (packageSet != null) {
|
| 3006 |
|
|
for (int i = 0; i < packageSet.size(); i++) {
|
| 3007 |
2753
|
jones
|
logMetacat.debug("doctype in package set: "
|
| 3008 |
2663
|
sgarg
|
+ (String) packageSet.elementAt(i));
|
| 3009 |
2098
|
jones
|
}
|
| 3010 |
|
|
}
|
| 3011 |
1716
|
berkley
|
|
| 3012 |
2098
|
jones
|
// handle every accessionNumber
|
| 3013 |
|
|
for (int i = 0; i < docList.length; i++) {
|
| 3014 |
|
|
String accessionNumber = docList[i];
|
| 3015 |
|
|
String owner = null;
|
| 3016 |
|
|
String publicId = null;
|
| 3017 |
|
|
// Get document owner and public id
|
| 3018 |
|
|
try {
|
| 3019 |
|
|
owner = getFieldValueForDoc(accessionNumber, "user_owner");
|
| 3020 |
|
|
publicId = getFieldValueForDoc(accessionNumber, "doctype");
|
| 3021 |
|
|
} catch (Exception e) {
|
| 3022 |
2663
|
sgarg
|
logMetacat.error("Error in handleSetAccessAction: "
|
| 3023 |
|
|
+ e.getMessage());
|
| 3024 |
2098
|
jones
|
error = "Error in set access control for document - "
|
| 3025 |
|
|
+ accessionNumber + e.getMessage();
|
| 3026 |
|
|
errorList.addElement(error);
|
| 3027 |
|
|
continue;
|
| 3028 |
|
|
}
|
| 3029 |
|
|
//check if user is the owner. Only owner can do owner
|
| 3030 |
|
|
if (username == null || owner == null || !username.equals(owner)) {
|
| 3031 |
|
|
error = "User - " + username
|
| 3032 |
|
|
+ " does not have permission to set "
|
| 3033 |
|
|
+ "access control for docid - " + accessionNumber;
|
| 3034 |
|
|
errorList.addElement(error);
|
| 3035 |
|
|
continue;
|
| 3036 |
|
|
}
|
| 3037 |
1716
|
berkley
|
|
| 3038 |
2098
|
jones
|
// If docid publicid is BIN data file or other beta4, 6 package
|
| 3039 |
|
|
// document
|
| 3040 |
|
|
// we could not do set access control. Because we don't want
|
| 3041 |
|
|
// inconsistent
|
| 3042 |
|
|
// to its access docuemnt
|
| 3043 |
|
|
if (publicId != null && packageSet != null
|
| 3044 |
|
|
&& packageSet.contains(publicId)) {
|
| 3045 |
|
|
error = "Could not set access control to document "
|
| 3046 |
|
|
+ accessionNumber
|
| 3047 |
|
|
+ "because it is in a pakcage and it has a access file for it";
|
| 3048 |
|
|
errorList.addElement(error);
|
| 3049 |
|
|
continue;
|
| 3050 |
|
|
}
|
| 3051 |
1716
|
berkley
|
|
| 3052 |
2098
|
jones
|
// for every principle
|
| 3053 |
|
|
for (int j = 0; j < principalList.length; j++) {
|
| 3054 |
|
|
String principal = principalList[j];
|
| 3055 |
|
|
try {
|
| 3056 |
|
|
//insert permission
|
| 3057 |
|
|
AccessControlForSingleFile accessControl = new AccessControlForSingleFile(
|
| 3058 |
|
|
accessionNumber, principal, permission, permType,
|
| 3059 |
|
|
permOrder);
|
| 3060 |
|
|
accessControl.insertPermissions();
|
| 3061 |
|
|
success = "Set access control to document "
|
| 3062 |
|
|
+ accessionNumber + " successfully";
|
| 3063 |
|
|
successList.addElement(success);
|
| 3064 |
|
|
} catch (Exception ee) {
|
| 3065 |
2663
|
sgarg
|
logMetacat.error(
|
| 3066 |
2098
|
jones
|
"Erorr in handleSetAccessAction2: "
|
| 3067 |
2663
|
sgarg
|
+ ee.getMessage());
|
| 3068 |
2098
|
jones
|
error = "Faild to set access control for document "
|
| 3069 |
|
|
+ accessionNumber + " because " + ee.getMessage();
|
| 3070 |
|
|
errorList.addElement(error);
|
| 3071 |
|
|
continue;
|
| 3072 |
|
|
}
|
| 3073 |
|
|
}
|
| 3074 |
1369
|
tao
|
}
|
| 3075 |
2098
|
jones
|
outputResponse(successList, errorList, out);
|
| 3076 |
|
|
}
|
| 3077 |
1716
|
berkley
|
|
| 3078 |
2098
|
jones
|
/*
|
| 3079 |
|
|
* A method try to determin a docid's public id, if couldn't find null will
|
| 3080 |
|
|
* be returned.
|
| 3081 |
|
|
*/
|
| 3082 |
|
|
private String getFieldValueForDoc(String accessionNumber, String fieldName)
|
| 3083 |
|
|
throws Exception
|
| 3084 |
1369
|
tao
|
{
|
| 3085 |
2753
|
jones
|
Logger logMetacat = Logger.getLogger(MetaCatServlet.class);
|
| 3086 |
2098
|
jones
|
if (accessionNumber == null || accessionNumber.equals("")
|
| 3087 |
|
|
|| fieldName == null || fieldName.equals("")) { throw new Exception(
|
| 3088 |
|
|
"Docid or field name was not specified"); }
|
| 3089 |
1716
|
berkley
|
|
| 3090 |
2098
|
jones
|
PreparedStatement pstmt = null;
|
| 3091 |
|
|
ResultSet rs = null;
|
| 3092 |
|
|
String fieldValue = null;
|
| 3093 |
|
|
String docId = null;
|
| 3094 |
|
|
DBConnection conn = null;
|
| 3095 |
|
|
int serialNumber = -1;
|
| 3096 |
1716
|
berkley
|
|
| 3097 |
2098
|
jones
|
// get rid of revision if access number has
|
| 3098 |
|
|
docId = MetaCatUtil.getDocIdFromString(accessionNumber);
|
| 3099 |
|
|
try {
|
| 3100 |
|
|
//check out DBConnection
|
| 3101 |
|
|
conn = DBConnectionPool
|
| 3102 |
|
|
.getDBConnection("MetaCatServlet.getPublicIdForDoc");
|
| 3103 |
|
|
serialNumber = conn.getCheckOutSerialNumber();
|
| 3104 |
|
|
pstmt = conn.prepareStatement("SELECT " + fieldName
|
| 3105 |
|
|
+ " FROM xml_documents " + "WHERE docid = ? ");
|
| 3106 |
1716
|
berkley
|
|
| 3107 |
2098
|
jones
|
pstmt.setString(1, docId);
|
| 3108 |
|
|
pstmt.execute();
|
| 3109 |
|
|
rs = pstmt.getResultSet();
|
| 3110 |
|
|
boolean hasRow = rs.next();
|
| 3111 |
|
|
int perm = 0;
|
| 3112 |
|
|
if (hasRow) {
|
| 3113 |
|
|
fieldValue = rs.getString(1);
|
| 3114 |
|
|
} else {
|
| 3115 |
|
|
throw new Exception("Could not find document: "
|
| 3116 |
|
|
+ accessionNumber);
|
| 3117 |
|
|
}
|
| 3118 |
|
|
} catch (Exception e) {
|
| 3119 |
2663
|
sgarg
|
logMetacat.error(
|
| 3120 |
2098
|
jones
|
"Exception in MetacatServlet.getPublicIdForDoc: "
|
| 3121 |
2663
|
sgarg
|
+ e.getMessage());
|
| 3122 |
2098
|
jones
|
throw e;
|
| 3123 |
|
|
} finally {
|
| 3124 |
|
|
try {
|
| 3125 |
|
|
rs.close();
|
| 3126 |
|
|
pstmt.close();
|
| 3127 |
1716
|
berkley
|
|
| 3128 |
2098
|
jones
|
} finally {
|
| 3129 |
|
|
DBConnectionPool.returnDBConnection(conn, serialNumber);
|
| 3130 |
|
|
}
|
| 3131 |
|
|
}
|
| 3132 |
|
|
return fieldValue;
|
| 3133 |
1369
|
tao
|
}
|
| 3134 |
1716
|
berkley
|
|
| 3135 |
2098
|
jones
|
/*
|
| 3136 |
2312
|
jones
|
* Get the list of documents from the database and return the list in an
|
| 3137 |
|
|
* Vector of identifiers.
|
| 3138 |
|
|
*
|
| 3139 |
|
|
* @ returns the array of identifiers
|
| 3140 |
|
|
*/
|
| 3141 |
|
|
private Vector getDocumentList() throws SQLException
|
| 3142 |
|
|
{
|
| 3143 |
2753
|
jones
|
Logger logMetacat = Logger.getLogger(MetaCatServlet.class);
|
| 3144 |
2312
|
jones
|
Vector docList = new Vector();
|
| 3145 |
|
|
PreparedStatement pstmt = null;
|
| 3146 |
|
|
ResultSet rs = null;
|
| 3147 |
|
|
DBConnection conn = null;
|
| 3148 |
|
|
int serialNumber = -1;
|
| 3149 |
|
|
|
| 3150 |
|
|
try {
|
| 3151 |
|
|
//check out DBConnection
|
| 3152 |
|
|
conn = DBConnectionPool
|
| 3153 |
|
|
.getDBConnection("MetaCatServlet.getDocumentList");
|
| 3154 |
|
|
serialNumber = conn.getCheckOutSerialNumber();
|
| 3155 |
|
|
pstmt = conn.prepareStatement("SELECT docid, rev"
|
| 3156 |
|
|
+ " FROM xml_documents ");
|
| 3157 |
|
|
pstmt.execute();
|
| 3158 |
|
|
rs = pstmt.getResultSet();
|
| 3159 |
|
|
while (rs.next()) {
|
| 3160 |
|
|
String docid = rs.getString(1);
|
| 3161 |
|
|
String rev = rs.getString(2);
|
| 3162 |
|
|
docList.add(docid + "." + rev);
|
| 3163 |
|
|
}
|
| 3164 |
|
|
} catch (SQLException e) {
|
| 3165 |
2663
|
sgarg
|
logMetacat.error(
|
| 3166 |
2312
|
jones
|
"Exception in MetacatServlet.getDocumentList: "
|
| 3167 |
2663
|
sgarg
|
+ e.getMessage());
|
| 3168 |
2312
|
jones
|
throw e;
|
| 3169 |
|
|
} finally {
|
| 3170 |
|
|
try {
|
| 3171 |
|
|
rs.close();
|
| 3172 |
|
|
pstmt.close();
|
| 3173 |
|
|
|
| 3174 |
|
|
} catch (SQLException se) {
|
| 3175 |
2663
|
sgarg
|
logMetacat.error(
|
| 3176 |
2312
|
jones
|
"Exception in MetacatServlet.getDocumentList: "
|
| 3177 |
2663
|
sgarg
|
+ se.getMessage());
|
| 3178 |
2312
|
jones
|
throw se;
|
| 3179 |
|
|
} finally {
|
| 3180 |
|
|
DBConnectionPool.returnDBConnection(conn, serialNumber);
|
| 3181 |
|
|
}
|
| 3182 |
|
|
}
|
| 3183 |
|
|
return docList;
|
| 3184 |
|
|
}
|
| 3185 |
|
|
|
| 3186 |
|
|
/*
|
| 3187 |
2098
|
jones
|
* A method to output setAccess action result
|
| 3188 |
|
|
*/
|
| 3189 |
|
|
private void outputResponse(Vector successList, Vector errorList,
|
| 3190 |
|
|
PrintWriter out)
|
| 3191 |
1369
|
tao
|
{
|
| 3192 |
2098
|
jones
|
boolean error = false;
|
| 3193 |
|
|
boolean success = false;
|
| 3194 |
|
|
// Output prolog
|
| 3195 |
|
|
out.println(PROLOG);
|
| 3196 |
|
|
// output success message
|
| 3197 |
|
|
if (successList != null) {
|
| 3198 |
|
|
for (int i = 0; i < successList.size(); i++) {
|
| 3199 |
|
|
out.println(SUCCESS);
|
| 3200 |
|
|
out.println((String) successList.elementAt(i));
|
| 3201 |
|
|
out.println(SUCCESSCLOSE);
|
| 3202 |
|
|
success = true;
|
| 3203 |
|
|
}
|
| 3204 |
|
|
}
|
| 3205 |
|
|
// output error message
|
| 3206 |
|
|
if (errorList != null) {
|
| 3207 |
|
|
for (int i = 0; i < errorList.size(); i++) {
|
| 3208 |
|
|
out.println(ERROR);
|
| 3209 |
|
|
out.println((String) errorList.elementAt(i));
|
| 3210 |
|
|
out.println(ERRORCLOSE);
|
| 3211 |
|
|
error = true;
|
| 3212 |
|
|
}
|
| 3213 |
|
|
}
|
| 3214 |
1716
|
berkley
|
|
| 3215 |
2098
|
jones
|
// if no error and no success info, send a error that nothing happened
|
| 3216 |
|
|
if (!error && !success) {
|
| 3217 |
|
|
out.println(ERROR);
|
| 3218 |
|
|
out.println("Nothing happend for setaccess action");
|
| 3219 |
|
|
out.println(ERRORCLOSE);
|
| 3220 |
|
|
}
|
| 3221 |
1369
|
tao
|
}
|
| 3222 |
2582
|
tao
|
|
| 3223 |
|
|
/**
|
| 3224 |
|
|
* Method to get session table which store the session info
|
| 3225 |
|
|
* @return
|
| 3226 |
|
|
*/
|
| 3227 |
|
|
public static Hashtable getSessionHash()
|
| 3228 |
|
|
{
|
| 3229 |
|
|
return sessionHash;
|
| 3230 |
|
|
}
|
| 3231 |
2648
|
tao
|
|
| 3232 |
|
|
/*
|
| 3233 |
|
|
* If the given docid only have one seperter, we need
|
| 3234 |
|
|
* append rev for it. The rev come from xml_documents
|
| 3235 |
|
|
*/
|
| 3236 |
|
|
private static String appendRev(String docid) throws Exception
|
| 3237 |
|
|
{
|
| 3238 |
2753
|
jones
|
Logger logMetacat = Logger.getLogger(MetaCatServlet.class);
|
| 3239 |
2648
|
tao
|
String newAccNum = null;
|
| 3240 |
|
|
String separator = MetaCatUtil.getOption("accNumSeparator");
|
| 3241 |
|
|
int firstIndex = docid.indexOf(separator);
|
| 3242 |
|
|
int lastIndex = docid.lastIndexOf(separator);
|
| 3243 |
|
|
if (firstIndex == lastIndex)
|
| 3244 |
|
|
{
|
| 3245 |
|
|
|
| 3246 |
|
|
//only one seperater
|
| 3247 |
|
|
int rev = DBUtil.getLatestRevisionInDocumentTable(docid);
|
| 3248 |
|
|
if (rev == -1)
|
| 3249 |
|
|
{
|
| 3250 |
2776
|
tao
|
throw new Exception("the requested docid '"
|
| 3251 |
|
|
+ docid+ "' does not exist");
|
| 3252 |
2648
|
tao
|
}
|
| 3253 |
|
|
else
|
| 3254 |
|
|
{
|
| 3255 |
|
|
newAccNum = docid+ separator+ rev;
|
| 3256 |
|
|
}
|
| 3257 |
|
|
}
|
| 3258 |
|
|
else
|
| 3259 |
|
|
{
|
| 3260 |
|
|
// in other suituation we don't change the docid
|
| 3261 |
|
|
newAccNum = docid;
|
| 3262 |
|
|
}
|
| 3263 |
2776
|
tao
|
//logMetacat.debug("The docid will be read is "+newAccNum);
|
| 3264 |
2648
|
tao
|
return newAccNum;
|
| 3265 |
2912
|
harris
|
}
|
| 3266 |
46
|
jones
|
}
|