/ - Diff - Metacat - Ecoinformatics Redmine

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       <pre><span class="ruby-comment cmt"># File lib/eml.rb, line 141</span>
       <span class="ruby-keyword kw">def</span> <span class="ruby-identifier">title</span>
         <span class="ruby-ivar">@doc</span>.<span class="ruby-identifier">root</span>.<span class="ruby-identifier">elements</span>[<span class="ruby-value str">&quot;dataset/title&quot;</span>].<span class="ruby-identifier">text</span>
       <span class="ruby-keyword kw">end</span></pre>
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       <title>teardown (EmlTest)</title>
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       <pre><span class="ruby-comment cmt"># File test/eml_test.rb, line 13</span>
       <span class="ruby-keyword kw">def</span> <span class="ruby-identifier">teardown</span>
       <span class="ruby-keyword kw">end</span></pre>
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       <title>test_largest_of_one_data_table (EmlTest)</title>
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       <pre><span class="ruby-comment cmt"># File test/eml_test.rb, line 26</span>
       <span class="ruby-keyword kw">def</span> <span class="ruby-identifier">test_largest_of_one_data_table</span>
         <span class="ruby-identifier">assert_kind_of</span>  <span class="ruby-constant">DataTable</span>, <span class="ruby-ivar">@eml</span>.<span class="ruby-identifier">largest_data_table</span>
       <span class="ruby-keyword kw">end</span></pre>
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       <title>test_has_xml_doc (EmlTest)</title>
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       <pre><span class="ruby-comment cmt"># File test/eml_test.rb, line 40</span>
       <span class="ruby-keyword kw">def</span> <span class="ruby-identifier">test_has_xml_doc</span>
         <span class="ruby-identifier">assert_kind_of</span>  <span class="ruby-constant">REXML</span><span class="ruby-operator">::</span><span class="ruby-constant">Document</span>, <span class="ruby-ivar">@eml</span>.<span class="ruby-identifier">doc</span>
       <span class="ruby-keyword kw">end</span></pre>
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       <title>new (Eml)</title>
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       <pre><span class="ruby-comment cmt"># File lib/eml.rb, line 67</span>
       <span class="ruby-keyword kw">def</span> <span class="ruby-identifier">initialize</span>(<span class="ruby-identifier">metadata</span>)
         <span class="ruby-keyword kw">if</span>(<span class="ruby-identifier">metadata</span>.<span class="ruby-identifier">class</span> <span class="ruby-operator">!=</span> <span class="ruby-constant">REXML</span><span class="ruby-operator">::</span><span class="ruby-constant">Document</span> <span class="ruby-operator">||</span> <span class="ruby-identifier">metadata</span>.<span class="ruby-identifier">root</span>.<span class="ruby-identifier">name</span> <span class="ruby-operator">!=</span> <span class="ruby-value str">'eml'</span>)
           <span class="ruby-identifier">raise</span> <span class="ruby-constant">ArgumentError</span>, <span class="ruby-value str">'Must initialize with REXML::Document representation of EML metadata'</span>
         <span class="ruby-keyword kw">else</span>
           <span class="ruby-ivar">@doc</span> = <span class="ruby-identifier">metadata</span>
           <span class="ruby-ivar">@docid</span> = <span class="ruby-ivar">@doc</span>.<span class="ruby-identifier">root</span>.<span class="ruby-identifier">attributes</span>[<span class="ruby-value str">'packageId'</span>]
         <span class="ruby-keyword kw">end</span>
       <span class="ruby-keyword kw">end</span></pre>
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       <title>data_tables (Eml)</title>
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       <pre><span class="ruby-comment cmt"># File lib/eml.rb, line 80</span>
       <span class="ruby-keyword kw">def</span> <span class="ruby-identifier">data_tables</span>
         <span class="ruby-identifier">tables</span> = []
         <span class="ruby-ivar">@doc</span>.<span class="ruby-identifier">root</span>.<span class="ruby-identifier">elements</span>.<span class="ruby-identifier">each</span>(<span class="ruby-value str">&quot;dataset/dataTable&quot;</span>) { <span class="ruby-operator">|</span><span class="ruby-identifier">element</span><span class="ruby-operator">|</span>
           <span class="ruby-identifier">tables</span>.<span class="ruby-identifier">push</span>(<span class="ruby-constant">DataTable</span>.<span class="ruby-identifier">new</span>(<span class="ruby-identifier">element</span>, <span class="ruby-keyword kw">self</span>))
+        }
         <span class="ruby-keyword kw">return</span> <span class="ruby-identifier">tables</span>
       <span class="ruby-keyword kw">end</span></pre>
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       <title>temporal_coverage (Eml)</title>
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       <pre><span class="ruby-comment cmt"># File lib/eml.rb, line 109</span>
       <span class="ruby-keyword kw">def</span> <span class="ruby-identifier">temporal_coverage</span>
         <span class="ruby-identifier">beginDates</span> = <span class="ruby-identifier">endDates</span> = <span class="ruby-constant">Array</span>.<span class="ruby-identifier">new</span>()
         <span class="ruby-identifier">path</span> = <span class="ruby-value str">&quot;dataset/coverage/temporalCoverage/rangeOfDates&quot;</span>
         <span class="ruby-ivar">@doc</span>.<span class="ruby-identifier">root</span>.<span class="ruby-identifier">elements</span>.<span class="ruby-identifier">each</span>(<span class="ruby-identifier">path</span>){ <span class="ruby-operator">|</span><span class="ruby-identifier">range</span><span class="ruby-operator">|</span>
           <span class="ruby-identifier">beginDates</span>.<span class="ruby-identifier">push</span>(
             <span class="ruby-constant">Date</span>.<span class="ruby-identifier">strptime</span>(<span class="ruby-identifier">range</span>.<span class="ruby-identifier">elements</span>[<span class="ruby-value str">&quot;beginDate&quot;</span>].<span class="ruby-identifier">elements</span>[<span class="ruby-value">1</span>].<span class="ruby-identifier">text</span>)
+          )
           <span class="ruby-identifier">endDates</span>.<span class="ruby-identifier">push</span>(
             <span class="ruby-constant">Date</span>.<span class="ruby-identifier">strptime</span>(<span class="ruby-identifier">range</span>.<span class="ruby-identifier">elements</span>[<span class="ruby-value str">&quot;endDate&quot;</span>].<span class="ruby-identifier">elements</span>[<span class="ruby-value">1</span>].<span class="ruby-identifier">text</span>)
+          )
+        }
         <span class="ruby-keyword kw">return</span> <span class="ruby-identifier">beginDates</span>.<span class="ruby-identifier">min</span>, <span class="ruby-identifier">endDates</span>.<span class="ruby-identifier">max</span>
       <span class="ruby-keyword kw">end</span></pre>
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     $:.unshift File.join(File.dirname(__FILE__), "..", "lib")
     require "metacat.rb"
     require "test/unit"
     class MetacatTest < Test::Unit::TestCase
       def setup
         # This test case is setup for use against the ucsb/msi metacat server
         # You need a valid login to run the test case as well as an squery, eml-docid,
         # and datatable docid that will all return documents
         @username = 'uid=cburt,o=PISCO,dc=ecoinformatics,dc=org'
         @password = '7lobster'
         @metacat = Metacat.new("http://data.piscoweb.org/catalog/metacat")
         #must return at least one eml document
         @squery = '<?xml version="1.0"?>
                      <pathquery version="1.2">
                        <returndoctype>eml://ecoinformatics.org/eml-2.0.1</returndoctype>
                        <returndoctype>eml://ecoinformatics.org/eml-2.0.0</returndoctype>
                        <returnfield>dataset/title</returnfield>
                        <returnfield>dataTable/entityName</returnfield>
                        <returnfield>creator/individualName/surName</returnfield>
                        <returnfield>creator/organizationName</returnfield>
                        <returnfield>dataTable/physical/distribution/online/url</returnfield>
                        <querygroup operator="INTERSECT">
                          <queryterm casesensitive="false" searchmode="starts-with">
                            <value>PISCO:</value>
                            <pathexpr>title</pathexpr>
                          </queryterm>
                          <querygroup operator="INTERSECT">
                            <queryterm casesensitive="true" searchmode="equals">
                              <value>Subtidal Community Survey Data</value>
                              <pathexpr>keywordSet/keyword</pathexpr>
                            </queryterm>
                            <queryterm casesensitive="true" searchmode="equals">
                              <value>PISCO Categories</value>
                              <pathexpr>keywordSet/keywordThesaurus</pathexpr>
                            </queryterm>
                          </querygroup>
                        </querygroup>
                      </pathquery>'
         @data_table_docid = 'HMS001_020ADCP019R00_20060612.40.1'
         @eml_docid = 'HMS001_020ADCP019R00_20060612.50.1'
         # Not accessable to user Public
         @locked_docid = 'chad.1.1'
       end
       def teardown
       end
       # Metacat.new
       def test_new
         assert_kind_of Metacat, Metacat.new("http://data.piscoweb.org/catalog/metacat")
       end
       def test_initial_login
         metacat = Metacat.new("http://data.piscoweb.org/catalog/metacat",
         'username' => @username, 'password' => @password)
         assert metacat
         assert metacat.logged_in?
       end
       def test_login_and_yield
         Metacat.new("http://data.piscoweb.org/catalog/metacat",
         'username' => @username, 'password' => @password) do |metacat|
           assert metacat.logged_in?
         end
       end
       # Metacat.find()
       def test_error_if_docid_and_squery_set?
         assert_raises ArgumentError do
           @metacat.find(
           :docid => @eml_docid,
           :squery => 'bs'
+          )
         end
       end
       def test_nil_if_document_does_not_exist?
         assert_nil @metacat.find(:docid => 'bs_docid.80.9')
       end
       def test_permission_denied
         assert_raise(MetacatPermissionDenied) { @metacat.find(:docid  =>  @locked_docid) }
       end
       def test_returns_eml?
         assert_kind_of Eml,
         @metacat.find(:docid => @eml_docid)
       end
       def test_will_not_return_data_table
         assert_nil @metacat.find(:docid => @data_table_docid)
       end
       def test_returns_array_of_eml_objects?
         results = @metacat.find(:squery => @squery)
         assert_kind_of Array, results
         assert_kind_of Eml, results[0]
       end
       # Metacat.login/logout
       def test_login
         assert @metacat.login(@username, @password)
         assert @metacat.logged_in?
       end
       def test_logout
         assert @metacat.login(@username, @password)
         assert @metacat.logout
         assert_equal false, @metacat.logged_in?
       end
       def test_failed_login
         assert_raise(MetacatPermissionDenied) do
           @metacat.login('bleh', @password)
         end
       end
       # Metacat.read
       def test_read_eml
         doc = @metacat.read(@eml_docid)
         assert_kind_of(REXML::Document, doc)
         assert_equal doc.root.name, 'eml'
       end
       def test_read_xml
         # not sure how to search for this yet
       end
       def test_read_data_table
         file = File.open('tmp.data_table', 'w+')
         @metacat.read(@data_table_docid) do |buffer|
           file.write(buffer)
         end
         file.close
         assert_equal(File.size('tmp.data_table'), File.size(File.dirname(__FILE__)+'/example.data_table'))
         File.delete('tmp.data_table')
       end
       # Metacat.squery
       def test_returns_xml
         doc = REXML::Document.new(@metacat.squery(@squery))
         assert doc
         assert_equal 'resultset', doc.root.name
       end
       # Metacat.insert
       # Metacat.update
       # query_string
       def test_string_formatting
         hash = {
           'genus'     =>  'Caranx',
           'species'   =>  'melampygus'
+        }
         assert_equal  '?genus=Caranx&species=melampygus', @metacat.send(:query_string, hash)
       end
     end

     $:.unshift File.join(File.dirname(__FILE__), "..", "lib")
     require 'test/unit'
     require 'eml.rb'
     require 'metacat.rb'
     require 'data_table.rb'
     class DataTableTest < Test::Unit::TestCase
       def setup
         @eml = Metacat.find(:docid => 'HMS001_020ADCP019R00_20060612.50.1')
         @data_table = @eml.largest_data_table
       end
       def teardown
       end
       # Replace this with your real tests.
       def test_id
         assert_equal  @data_table.docid, @data_table.id
       end
       def test_docid
         assert_equal  'HMS001_020ADCP019R00_20060612.40.1', @data_table.docid
       end
       def test_location
         assert_equal  'ecogrid://knb/HMS001_020ADCP019R00_20060612.40.1',
                         @data_table.location
       end
       def test_size
         assert_equal @data_table.size, 158041130
       end
       def test_physical
         assert_kind_of  REXML::Element, @data_table.physical
       end
       def test_data_format
         assert_equal 'textFormat', @data_table.data_format
       end
       def test_text_format
         assert_kind_of REXML::Element, @data_table.text_format
       end
       def test_simple_delimited
         assert_kind_of REXML::Element, @data_table.simple_delimited
       end
       def test_field_delimiter
         assert_kind_of  String, @data_table.field_delimiter
       end
       def test_num_headers
         assert_equal 1, @data_table.num_headers
       end
       def test_record_delimiter
         assert_equal '#x0A', @data_table.record_delimiter
       end
       def test_metadata_attr_reader
         assert_kind_of  REXML::Element, @data_table.metadata
       end
       def test_read
         f1 = File.new("tmp/#{@data_table.docid}", "w+")
         @data_table.read do |buffer|
           f1.write buffer
         end
         f1.close
         assert_equal  File.size("test/fixtures/#{@data_table.id}"),
                         File.size("tmp/#{@data_table.id}")
       end
     end

     $:.unshift File.join(File.dirname(__FILE__), "..", "lib")
     require 'test/unit'
     require 'eml.rb'
     require 'metacat.rb'
     class EmlTest < Test::Unit::TestCase
       def setup
         @metacat = Metacat.new('http://data.piscoweb.org/catalog/metacat')
         @eml = @metacat.find(:docid => 'HMS001_020ADCP019R00_20060612.50.1')
       end
       def teardown
       end
       def test_temporal_coverage
         assert_equal [Date.strptime('2006-06-12'), Date.strptime('2006-08-30')] ,
                       @eml.temporal_coverage
       end
       def test_has_data_tables
         assert_kind_of  Array, @eml.data_tables
         assert_kind_of  DataTable, @eml.data_tables[0]
       end
       def test_largest_of_one_data_table
         assert_kind_of  DataTable, @eml.largest_data_table
       end
       def test_largest_of_many_data_table
         eml = @metacat.find(:docid => 'pisco_subtidal.12.3')
         assert_kind_of  DataTable, eml.largest_data_table
         assert_equal    'pisco_subtidal.14.1', eml.largest_data_table.docid
       end
       def test_to_s
         assert_kind_of  String, @eml.to_s
       end
       def test_has_xml_doc
         assert_kind_of  REXML::Document, @eml.doc
       end
       def test_correct_docid
         assert_equal  'HMS001_020ADCP019R00_20060612.50.1', @eml.docid
       end
       def text_to_xml
         # While the method is to_xml, this method outputs the xml as a string,
         # not a REXML DOM object
         assert_kind_of  String, @eml.to_xml
       end
     end

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     require 'rake'
     require 'rake/testtask'
     task :default => [:test_units]
     desc "Run all unit test"
     Rake::TestTask.new("test_units") do |t|
       t.pattern = 'test/*_test.rb'
       t.verbose = true
       t.warning = true
     end

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         <a href="classes/DataTable.html#M000039">columns (DataTable)</a><br />
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         <a href="classes/Eml.html#M000044">data_tables (Eml)</a><br />
         <a href="classes/DataTable.html#M000027">docid (DataTable)</a><br />
         <a href="classes/DataTable.html#M000040">entity_name (DataTable)</a><br />
         <a href="classes/DataTable.html#M000038">field_delimiter (DataTable)</a><br />
         <a href="classes/DataTable.html#M000033">field_delimiter (DataTable)</a><br />
         <a href="classes/Metacat.html#M000072">find (Metacat)</a><br />
         <a href="classes/Eml.html#M000047">geographic_coverage (Eml)</a><br />
         <a href="classes/DataTable.html#M000028">id (DataTable)</a><br />
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         <a href="classes/DataTable.html#M000029">location (DataTable)</a><br />
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         <a href="classes/Metacat.html#M000073">login (Metacat)</a><br />
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         <a href="classes/Metacat.html#M000070">new (Metacat)</a><br />
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         <a href="classes/Net/BufferedIO.html#M000077">rbuf_fill (Net::BufferedIO)</a><br />
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         <a href="classes/MetacatTest.html#M000052">teardown (MetacatTest)</a><br />
         <a href="classes/DataTableTest.html#M000012">teardown (DataTableTest)</a><br />
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         <a href="classes/EmlTest.html#M000009">test_correct_docid (EmlTest)</a><br />
         <a href="classes/DataTableTest.html#M000018">test_data_format (DataTableTest)</a><br />
         <a href="classes/DataTableTest.html#M000014">test_docid (DataTableTest)</a><br />
         <a href="classes/MetacatTest.html#M000056">test_error_if_docid_and_squery_set? (MetacatTest)</a><br />
         <a href="classes/MetacatTest.html#M000064">test_failed_login (MetacatTest)</a><br />
         <a href="classes/DataTableTest.html#M000021">test_field_delimiter (DataTableTest)</a><br />
         <a href="classes/EmlTest.html#M000004">test_has_data_tables (EmlTest)</a><br />
         <a href="classes/EmlTest.html#M000008">test_has_xml_doc (EmlTest)</a><br />
         <a href="classes/DataTableTest.html#M000013">test_id (DataTableTest)</a><br />
         <a href="classes/MetacatTest.html#M000054">test_initial_login (MetacatTest)</a><br />
         <a href="classes/EmlTest.html#M000006">test_largest_of_many_data_table (EmlTest)</a><br />
         <a href="classes/EmlTest.html#M000005">test_largest_of_one_data_table (EmlTest)</a><br />
         <a href="classes/DataTableTest.html#M000015">test_location (DataTableTest)</a><br />
         <a href="classes/MetacatTest.html#M000062">test_login (MetacatTest)</a><br />
         <a href="classes/MetacatTest.html#M000055">test_login_and_yield (MetacatTest)</a><br />
         <a href="classes/MetacatTest.html#M000063">test_logout (MetacatTest)</a><br />
         <a href="classes/DataTableTest.html#M000024">test_metadata_attr_reader (DataTableTest)</a><br />
         <a href="classes/MetacatTest.html#M000053">test_new (MetacatTest)</a><br />
         <a href="classes/MetacatTest.html#M000057">test_nil_if_document_does_not_exist? (MetacatTest)</a><br />
         <a href="classes/DataTableTest.html#M000022">test_num_headers (DataTableTest)</a><br />
         <a href="classes/MetacatTest.html#M000058">test_permission_denied (MetacatTest)</a><br />
         <a href="classes/DataTableTest.html#M000017">test_physical (DataTableTest)</a><br />
         <a href="classes/DataTableTest.html#M000025">test_read (DataTableTest)</a><br />
         <a href="classes/MetacatTest.html#M000067">test_read_data_table (MetacatTest)</a><br />
         <a href="classes/MetacatTest.html#M000065">test_read_eml (MetacatTest)</a><br />
         <a href="classes/MetacatTest.html#M000066">test_read_xml (MetacatTest)</a><br />
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         <a href="classes/MetacatTest.html#M000061">test_returns_array_of_eml_objects? (MetacatTest)</a><br />
         <a href="classes/MetacatTest.html#M000059">test_returns_eml? (MetacatTest)</a><br />
         <a href="classes/MetacatTest.html#M000068">test_returns_xml (MetacatTest)</a><br />
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         <a href="classes/EmlTest.html#M000003">test_temporal_coverage (EmlTest)</a><br />
         <a href="classes/DataTableTest.html#M000019">test_text_format (DataTableTest)</a><br />
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         <a href="classes/Eml.html#M000049">title (Eml)</a><br />
         <a href="classes/Eml.html#M000043">to_s (Eml)</a><br />
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           metacat.rb&nbsp;&nbsp;
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