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1 2099 jones
/**
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 *  '$RCSfile$'
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 *  Copyright: 2004 Regents of the University of California and the
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 *             National Center for Ecological Analysis and Synthesis
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 *
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 *   '$Author$'
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 *     '$Date$'
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 * '$Revision$'
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 *
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 * This program is free software; you can redistribute it and/or modify
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 * it under the terms of the GNU General Public License as published by
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 * the Free Software Foundation; either version 2 of the License, or
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 * (at your option) any later version.
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 *
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 * This program is distributed in the hope that it will be useful,
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 * but WITHOUT ANY WARRANTY; without even the implied warranty of
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 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
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 * GNU General Public License for more details.
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 *
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 * You should have received a copy of the GNU General Public License
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 * along with this program; if not, write to the Free Software
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 * Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA  02111-1307  USA
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 */
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/*
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 * Drop all of the objects in proper order
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 */
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set echo off
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DROP SEQUENCE xml_nodes_id_seq;
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DROP SEQUENCE xml_revisions_id_seq;
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DROP SEQUENCE xml_catalog_id_seq;
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DROP SEQUENCE xml_relation_id_seq;
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DROP SEQUENCE xml_replication_id_seq;
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DROP SEQUENCE identifier_id_seq;
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DROP SEQUENCE access_log_id_seq;
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DROP SEQUENCE xml_returnfield_id_seq;
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DROP SEQUENCE xml_queryresult_id_seq;
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DROP SEQUENCE xml_path_index_id_seq;
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/* Drop triggers are not necessary */
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DROP TRIGGER xml_nodes_before_insert;
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DROP TRIGGER xml_revisions_before_insert;
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DROP TRIGGER xml_catalog_before_insert;
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DROP TRIGGER xml_relation_before_insert;
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DROP TRIGGER xml_replication_before_insert;
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DROP TRIGGER identifier_before_insert;
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DROP TRIGGER access_log_before_insert;
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DROP TRIGGER xml_returnfield_before_insert;
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DROP TRIGGER xml_queryresult_before_insert;
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DROP TABLE xml_index;
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DROP TABLE xml_access;
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DROP TABLE xml_accesssubtree;
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DROP TABLE xml_revisions;
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DROP TABLE xml_relation;
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DROP TABLE xml_documents CASCADE CONSTRAINTS;
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DROP TABLE xml_nodes;
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DROP TABLE xml_nodes_revisions;
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DROP TABLE xml_replication;
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DROP TABLE xml_catalog;
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DROP TABLE identifier;
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DROP TABLE access_log;
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DROP TABLE harvest_site_schedule;
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DROP TABLE harvest_detail_log;
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DROP TABLE harvest_log;
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DROP TABLE xml_queryresult;
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DROP TABLE xml_returnfield;
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DROP TABLE xml_path_index;
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72 517 berkley
/*
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 *Replication -- table to store servers that metacat is replicated to
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 */
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CREATE TABLE xml_replication (
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  serverid      NUMBER(20),
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  server        VARCHAR2(512),
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  last_checked  DATE,
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  replicate     NUMBER(1),
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  datareplicate NUMBER(1),
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  hub NUMBER(1),
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  CONSTRAINT xml_replication_pk PRIMARY KEY (serverid)
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);
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CREATE SEQUENCE xml_replication_id_seq;
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CREATE TRIGGER xml_replication_before_insert
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BEFORE INSERT ON xml_replication FOR EACH ROW
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BEGIN
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  SELECT xml_replication_id_seq.nextval
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    INTO :new.serverid
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    FROM dual;
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END;
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/
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INSERT INTO xml_replication (server, replicate, datareplicate, hub)
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 VALUES ('localhost', '0', '0', '0');
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98 2422 sgarg
/*
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 * Nodes -- table to store XML Nodes (both elements and attributes)
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 */
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CREATE SEQUENCE xml_nodes_id_seq;
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CREATE TABLE xml_nodes (
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	nodeid		NUMBER(20),	-- the unique node id (pk)
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	nodeindex	NUMBER(10),	-- order of nodes within parent
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	nodetype	VARCHAR2(20),	-- type (DOCUMENT, COMMENT, PI,
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					-- ELEMENT, ATTRIBUTE, TEXT)
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	nodename	VARCHAR2(250),	-- the name of an element or attribute
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	nodeprefix	VARCHAR2(50),	-- the namespace prefix of an element
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                                        -- or attribute
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	nodedata	VARCHAR2(4000), -- the data for this node (e.g.,
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					-- for TEXT it is the content)
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	parentnodeid	NUMBER(20),	-- index of the parent of this node
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	rootnodeid	NUMBER(20),	-- index of the root node of this tree
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	docid		VARCHAR2(250),	-- index to the document id
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	date_created	DATE,
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	date_updated	DATE,
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	nodedatanumerical NUMBER,       -- the data for this node if
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					-- it is a number
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   CONSTRAINT xml_nodes_pk PRIMARY KEY (nodeid),
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   CONSTRAINT xml_nodes_root_fk
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		FOREIGN KEY (rootnodeid) REFERENCES xml_nodes,
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   CONSTRAINT xml_nodes_parent_fk
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		FOREIGN KEY (parentnodeid) REFERENCES xml_nodes
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);
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CREATE TRIGGER xml_nodes_before_insert
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BEFORE INSERT ON xml_nodes FOR EACH ROW
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BEGIN
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  SELECT xml_nodes_id_seq.nextval
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    INTO :new.nodeid
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    FROM dual;
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END;
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/
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/*
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 * Indexes of rootnodeid, parentnodeid, and nodename in xml_nodes
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 */
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CREATE INDEX xml_nodes_idx1 ON xml_nodes (rootnodeid);
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CREATE INDEX xml_nodes_idx2 ON xml_nodes (parentnodeid);
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CREATE INDEX xml_nodes_idx3 ON xml_nodes (nodename);
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/*
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 * xml_nodes_revisions -- table to store nodes from xml_nodes which are of old revisions and deleted document
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 */
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CREATE TABLE xml_nodes_revisions (
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        nodeid          NUMBER(20),     -- the unique node id (pk)
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        nodeindex       NUMBER(10),     -- order of nodes within parent
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        nodetype        VARCHAR2(20),   -- type (DOCUMENT, COMMENT, PI,
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                                        -- ELEMENT, ATTRIBUTE, TEXT)
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        nodename        VARCHAR2(250),  -- the name of an element or attribute
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        nodeprefix      VARCHAR2(50),   -- the namespace prefix of an element
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                                        -- or attribute
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        nodedata        VARCHAR2(4000), -- the data for this node (e.g.,
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                                        -- for TEXT it is the content)
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        parentnodeid    NUMBER(20),     -- index of the parent of this node
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        rootnodeid      NUMBER(20),     -- index of the root node of this tree
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        docid           VARCHAR2(250),  -- index to the document id
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        date_created    DATE,
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        date_updated    DATE,
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        nodedatanumerical NUMBER,       -- the data for this node if
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                                        -- it is a number
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   CONSTRAINT xml_nodes_revisions_pk PRIMARY KEY (nodeid),
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   CONSTRAINT xml_nodes_revisions_root_fk
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                FOREIGN KEY (rootnodeid) REFERENCES xml_nodes_revisions,
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   CONSTRAINT xml_nodes_revisions_parent_fk
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                FOREIGN KEY (parentnodeid) REFERENCES xml_nodes_revisions
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);
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/*
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 * Indexes of rootnodeid, parentnodeid, and nodename in xml_nodes_revision
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 */
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CREATE INDEX xml_nodes_revisions_idx1 ON xml_nodes_revisions (rootnodeid);
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CREATE INDEX xml_nodes_revisions_idx2 ON xml_nodes_revisions (parentnodeid);
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CREATE INDEX xml_nodes_revisions_idx3 ON xml_nodes_revisions (nodename);
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/*
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 * XML Catalog -- table to store all external sources for XML documents
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 */
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CREATE TABLE xml_catalog (
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	catalog_id	NUMBER(20),	-- the id for this catalog entry
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	entry_type	VARCHAR2(500),	-- the type of this catalog entry
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					-- (e.g., DTD, XSD, XSL)
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	source_doctype	VARCHAR2(500),	-- the source public_id for transforms
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	target_doctype	VARCHAR2(500),	-- the target public_id for transforms
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	public_id	VARCHAR2(500),	-- the unique id for this type
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	system_id	VARCHAR2(1000),	-- the local location of the object
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   CONSTRAINT xml_catalog_pk PRIMARY KEY (catalog_id),
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   CONSTRAINT xml_catalog_uk UNIQUE
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		(entry_type, source_doctype, target_doctype, public_id)
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);
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CREATE SEQUENCE xml_catalog_id_seq;
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CREATE TRIGGER xml_catalog_before_insert
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BEFORE INSERT ON xml_catalog FOR EACH ROW
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BEGIN
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  SELECT xml_catalog_id_seq.nextval
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    INTO :new.catalog_id
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    FROM dual;
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END;
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/
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/*
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 * Documents -- table to store XML documents
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 */
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CREATE TABLE xml_documents (
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	docid		VARCHAR2(250),	-- the document id #
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	rootnodeid	NUMBER(20),	-- reference to root node of the DOM
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	docname		VARCHAR2(100),	-- usually the root element name
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	doctype		VARCHAR2(100),	-- public id indicating document type
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	user_owner	VARCHAR2(100),	-- the user owned the document
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	user_updated	VARCHAR2(100),	-- the user updated the document
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	server_location NUMBER(20),	-- the server on which this document
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                                        -- originates
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	rev 		NUMBER(10) DEFAULT 1,--the revision number of the docume
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	date_created	DATE,
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	date_updated	DATE,
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	public_access	NUMBER(1),	-- flag for public access
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        catalog_id      NUMBER(20),	-- reference to xml_catalog
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   CONSTRAINT xml_documents_pk PRIMARY KEY (docid),
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   CONSTRAINT xml_documents_rep_fk
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    		FOREIGN KEY (server_location) REFERENCES xml_replication,
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   CONSTRAINT xml_documents_root_fk
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		FOREIGN KEY (rootnodeid) REFERENCES xml_nodes,
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   CONSTRAINT xml_documents_catalog_fk
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		FOREIGN KEY (catalog_id) REFERENCES xml_catalog
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);
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/*
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 * Index of <docid,doctype> in xml_document
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 */
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CREATE INDEX xml_documents_idx1 ON xml_documents (docid, doctype);
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/*
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 * Revised Documents -- table to store XML documents saved after an UPDATE
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 *                    or DELETE
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 */
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CREATE TABLE xml_revisions (
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	revisionid	NUMBER(20),	-- the revision number we are saving
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	docid		VARCHAR2(250),	-- the document id #
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	rootnodeid	NUMBER(20),	-- reference to root node of the DOM
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	docname		VARCHAR2(100),	-- usually the root element name
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	doctype		VARCHAR2(100),	-- public id indicating document type
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	user_owner	VARCHAR2(100),
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	user_updated	VARCHAR2(100),
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	server_location NUMBER(20),
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	rev		NUMBER(10),
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	date_created	DATE,
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	date_updated	DATE,
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	public_access	NUMBER(1),	-- flag for public access
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        catalog_id      NUMBER(20),	-- reference to xml_catalog
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   CONSTRAINT xml_revisions_pk PRIMARY KEY (revisionid),
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   CONSTRAINT xml_revisions_rep_fk
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		FOREIGN KEY (server_location) REFERENCES xml_replication,
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   CONSTRAINT xml_revisions_root_fk
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		FOREIGN KEY (rootnodeid) REFERENCES xml_nodes_revisions,
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   CONSTRAINT xml_revisions_catalog_fk
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		FOREIGN KEY (catalog_id) REFERENCES xml_catalog
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);
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CREATE SEQUENCE xml_revisions_id_seq;
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CREATE TRIGGER xml_revisions_before_insert
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BEFORE INSERT ON xml_revisions FOR EACH ROW
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BEGIN
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  SELECT xml_revisions_id_seq.nextval
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    INTO :new.revisionid
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    FROM dual;
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END;
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/
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/*
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 * ACL -- table to store ACL for XML documents by principals
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 */
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CREATE TABLE xml_access (
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	docid		VARCHAR2(250),	-- the document id #
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	accessfileid	VARCHAR2(250),	-- the document id # for the access file
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	principal_name	VARCHAR2(100),	-- name of user, group, etc.
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	permission	NUMBER(1),	-- "read", "write", "all"
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	perm_type	VARCHAR2(32),	-- "allowed" or "denied"
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	perm_order	VARCHAR2(32),	-- "allow first" or "deny first"
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	begin_time	DATE,		-- the time that permission begins
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	end_time	DATE,		-- the time that permission ends
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	ticket_count	NUMBER(5),	-- ticket counter for that permission
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  subtreeid VARCHAR2(32), -- sub tree id
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  startnodeid NUMBER(20), -- start node for sub tree
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  endnodeid NUMBER(20),    -- end node for sub tree
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   CONSTRAINT xml_access_ck CHECK (begin_time < end_time),
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   CONSTRAINT xml_access_accessfileid_fk
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		FOREIGN KEY (accessfileid) REFERENCES xml_documents
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);
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/*
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 * Index of Nodes -- table to store precomputed paths through tree for
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 * quick searching in structured searches
301
 */
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CREATE TABLE xml_index (
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	nodeid		NUMBER(20),	-- the unique node id
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	path		VARCHAR2(1000),	-- precomputed path through tree
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	docid		VARCHAR2(250),	-- index to the document id
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	doctype		VARCHAR2(100),	-- public id indicating document type
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        parentnodeid    NUMBER(20),     -- id of the parent of the node
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					-- represented by this row
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   CONSTRAINT xml_index_pk PRIMARY KEY (nodeid,path),
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   CONSTRAINT xml_index_nodeid_fk FOREIGN KEY (nodeid) REFERENCES xml_nodes,
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   CONSTRAINT xml_index_docid_fk
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		FOREIGN KEY (docid) REFERENCES xml_documents
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);
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/*
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 * Index of the paths in xml_index
317 177 jones
 */
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CREATE INDEX xml_index_idx1 ON xml_index (path);
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CREATE INDEX xml_index_idx2 ON xml_index (docid);
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321 2516 sgarg
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/*
323 2614 tao
 * Index of Paths - table to store nodes with paths specified by userst in metacat.properties
324 2516 sgarg
 */
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CREATE TABLE xml_path_index (
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        nodeid          NUMBER(20),     -- the unique node id
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        docid           VARCHAR2(250),  -- index to the document id
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        path            VARCHAR2(1000), -- precomputed path through tree
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	    nodedata        VARCHAR2(4000), -- the data for this node e.g.,
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        nodedatanumerical NUMBER(20),   -- the data for this node if
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        parentnodeid    NUMBER(20),     -- index of the parent of this node
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        CONSTRAINT xml_path_index_pk PRIMARY KEY (nodeid),
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        CONSTRAINT xml_path_index_docid_fk FOREIGN KEY (docid) REFERENCES xml_documents
334
 );
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/*
338 2630 tao
 * create sequence an trigger
339 2614 tao
 */
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CREATE SEQUENCE xml_path_index_id_seq;
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CREATE TRIGGER xml_path_index_before_insert
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BEFORE INSERT ON xml_path_index FOR EACH ROW
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BEGIN
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  SELECT xml_path_index_id_seq.nextval
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    INTO :new.nodeid
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    FROM dual;
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END;
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/
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/*
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 * Index of the path, nodedata, nodedatanumerical in xml_path_index
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 */
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CREATE INDEX xml_path_index_idx1 ON xml_path_index (path);
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CREATE INDEX xml_path_index_idx2 ON xml_path_index (nodedata);
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CREATE INDEX xml_path_index_idx3 ON xml_path_index (nodedatanumerical);
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CREATE TABLE xml_relation (
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	relationid    NUMBER(20) PRIMARY KEY, -- unique id
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	docid         VARCHAR2(250),          -- the docid of the package file
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	                                      -- that this relation came from
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        packagetype   VARCHAR2(250),          -- the type of the package
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	subject       VARCHAR2(512) NOT NULL, -- the subject of the relation
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	subdoctype    VARCHAR2(128),          -- the doctype of the subject
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	relationship  VARCHAR2(128)  NOT NULL,-- the relationship type
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	object        VARCHAR2(512) NOT NULL, -- the object of the relation
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	objdoctype    VARCHAR2(128),          -- the doctype of the object
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	CONSTRAINT xml_relation_uk UNIQUE (docid, subject, relationship, object),
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	CONSTRAINT xml_relation_docid_fk
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		FOREIGN KEY (docid) REFERENCES xml_documents
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  );
374
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CREATE SEQUENCE xml_relation_id_seq;
376 2422 sgarg
377 472 berkley
CREATE TRIGGER xml_relation_before_insert
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BEFORE INSERT ON xml_relation FOR EACH ROW
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BEGIN
380
  SELECT xml_relation_id_seq.nextval
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    INTO :new.relationid
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    FROM dual;
383 2422 sgarg
END;
384 472 berkley
/
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386 2422 sgarg
/*
387 2769 jones
 * Table used to store all document identifiers in metacat.  Each identifier
388
 * consists of 4 subparts, an authority, namespace, object, and revision as
389
 * defined in the LSID specification.
390 759 bojilova
 */
391 2769 jones
CREATE SEQUENCE identifier_id_seq;
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CREATE TABLE identifier (
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   id        NUMBER(20) PRIMARY KEY, -- primary key
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   authority VARCHAR2(255),  -- the authority issuing the identifier
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   namespace VARCHAR2(255),  -- the namespace qualifying the identifier
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   object    VARCHAR2(255),  -- the local part of the identifier for a particular object
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   revision  VARCHAR2(255)   -- the revision part of the identifier
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);
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CREATE TRIGGER identifier_before_insert
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BEFORE INSERT ON identifier FOR EACH ROW
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BEGIN
402 2769 jones
  SELECT identifier_id_seq.nextval
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    INTO :new.id
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    FROM dual;
405 2422 sgarg
END;
406 759 bojilova
/
407
408 2422 sgarg
/*
409
 * accesssubtree -- table to store access subtree info
410 1530 tao
 */
411
CREATE TABLE xml_accesssubtree (
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	docid		VARCHAR2(250),	-- the document id #
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  rev 		NUMBER(10) DEFAULT 1, --the revision number of the docume
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  controllevel VARCHAR2(50), -- the level it control -- document or subtree
415 2422 sgarg
  subtreeid VARCHAR2(250), -- the subtree id
416 1530 tao
	startnodeid	NUMBER(20),	-- the start node id of access subtree
417 1625 tao
  endnodeid NUMBER(20), -- the end node if of access subtree
418 2422 sgarg
  CONSTRAINT xml_accesssubtree_docid_fk
419 1625 tao
		FOREIGN KEY (docid) REFERENCES xml_documents
420 1530 tao
);
421
422 2099 jones
/*
423 2422 sgarg
 * Returnfields -- table to store combinations of returnfields requested
424
 *		   and the number of times this table is accessed
425
 */
426
CREATE TABLE xml_returnfield (
427
        returnfield_id     NUMBER(20),     -- the id for this returnfield entry
428
        returnfield_string VARCHAR2(2000), -- the returnfield string
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        usage_count        NUMBER(20),     -- the number of times this string
430
                                           -- has been requested
431
        CONSTRAINT xml_returnfield_pk PRIMARY KEY (returnfield_id)
432
);
433
CREATE INDEX xml_returnfield_idx1 ON xml_returnfield(returnfield_string);
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CREATE SEQUENCE xml_returnfield_id_seq;
436
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CREATE TRIGGER xml_returnfield_before_insert
438
BEFORE INSERT ON xml_returnfield FOR EACH ROW
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BEGIN
440
  SELECT xml_returnfield_id_seq.nextval
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    INTO :new.returnfield_id
442
    FROM dual;
443
END;
444
/
445
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/*
447
 * Queryresults -- table to store queryresults for a given docid
448
 * and returnfield_id
449
 */
450
CREATE TABLE xml_queryresult(
451
  queryresult_id       NUMBER(20),     -- id for this entry
452
  returnfield_id       NUMBER(20),     -- id for the returnfield corresponding to this entry
453
  docid                VARCHAR2(250),  -- docid of the document
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  queryresult_string   VARCHAR2(4000), -- resultant text generated for this docid and given
455
  				       -- returnfield
456
  CONSTRAINT xml_queryresult_pk PRIMARY KEY (queryresult_id),
457
  CONSTRAINT xml_queryresult_searchid_fk
458
               FOREIGN KEY (returnfield_id) REFERENCES xml_returnfield
459
);
460
461
CREATE INDEX xml_queryresult_idx1 ON xml_queryresult (returnfield_id, docid);
462
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CREATE SEQUENCE xml_queryresult_id_seq;
464
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CREATE TRIGGER xml_queryresult_before_insert
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BEFORE INSERT ON xml_queryresult FOR EACH ROW
467
BEGIN
468
 SELECT xml_queryresult_id_seq.nextval
469
   INTO :new.queryresult_id
470
   FROM dual;
471
END;
472
/
473
474 2516 sgarg
475
476
477 2422 sgarg
/*
478 2099 jones
 * Logging -- table to store metadata and data access log
479
 */
480
CREATE TABLE access_log (
481
  entryid       NUMBER(20),     -- the identifier for the log event
482
  ip_address    VARCHAR2(512),  -- the ip address inititiating the event
483
  principal     VARCHAR2(512),  -- the user initiiating the event
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  docid         VARCHAR2(250),	-- the document id #
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  event         VARCHAR2(512),  -- the code symbolizing the event type
486
  date_logged   DATE,           -- the datetime on which the event occurred
487
  CONSTRAINT access_log_pk PRIMARY KEY (entryid)
488
);
489
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CREATE SEQUENCE access_log_id_seq;
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CREATE TRIGGER access_log_before_insert
492
BEFORE INSERT ON access_log FOR EACH ROW
493
BEGIN
494
  SELECT access_log_id_seq.nextval
495
    INTO :new.entryid
496
    FROM dual;
497
END;
498 2112 costa
/
499 2109 costa
500 2422 sgarg
/*
501 2109 costa
 * harvest_site_schedule -- table to store harvest sites and schedule info
502
 */
503
CREATE TABLE harvest_site_schedule (
504
  site_schedule_id NUMBER,         -- unique id
505
  documentlisturl  VARCHAR2(255),  -- URL of the site harvest document list
506
  ldapdn           VARCHAR2(255),  -- LDAP distinguished name for site account
507
  datenextharvest  DATE,           -- scheduled date of next harvest
508
  datelastharvest  DATE,           -- recorded date of last harvest
509
  updatefrequency  NUMBER,         -- the harvest update frequency
510
  unit             VARCHAR2(50),   -- update unit -- days weeks or months
511
  contact_email    VARCHAR2(50),   -- email address of the site contact person
512
  ldappwd          VARCHAR2(20),   -- LDAP password for site account
513
  CONSTRAINT harvest_site_schedule_pk PRIMARY KEY (site_schedule_id)
514
);
515
516 2422 sgarg
/*
517 2109 costa
 * harvest_log -- table to log entries for harvest operations
518
 */
519
CREATE TABLE harvest_log (
520
  harvest_log_id         NUMBER,         -- unique id
521
  harvest_date           DATE,           -- date of the current harvest
522
  status                 NUMBER,         -- non-zero indicates an error status
523
  message                VARCHAR2(1000), -- text message for this log entry
524
  harvest_operation_code VARCHAR2(30),   -- the type of harvest operation
525 2112 costa
  site_schedule_id       NUMBER,         -- site schedule id, or 0 if no site
526
  CONSTRAINT harvest_log_pk PRIMARY KEY (harvest_log_id)
527 2109 costa
);
528
529 2422 sgarg
/*
530 2109 costa
 * harvest_detail_log -- table to log detailed info about documents that
531
 *                       generated errors during the harvest
532
 */
533
CREATE TABLE harvest_detail_log (
534
  detail_log_id          NUMBER,         -- unique id
535
  harvest_log_id         NUMBER,         -- ponter to the related log entry
536
  scope                  VARCHAR2(50),   -- document scope
537
  identifier             NUMBER,         -- document identifier
538
  revision               NUMBER,         -- document revision
539
  document_url           VARCHAR2(255),  -- document URL
540
  error_message          VARCHAR2(1000), -- text error message
541
  document_type          VARCHAR2(100),  -- document type
542
  CONSTRAINT harvest_detail_log_pk PRIMARY KEY (detail_log_id),
543 2422 sgarg
  CONSTRAINT harvest_detail_log_fk
544 2109 costa
        FOREIGN KEY (harvest_log_id) REFERENCES harvest_log
545
);