Metacat

#!/bin/bash

#Call a java client class to query metacat automatically and metacat server

#will record the performance data into a file. Since we need restart postgres,

#this script should be run as root user

#Note: before running the script, user should run both "ant jar" and "ant clientjar"

#in Metacat to get metaca-client.jar and metacat.jar in build directory. 

#variables

JUNIT=/usr/local/devtools/apache-ant/lib/junit-4.3.1.jar

METACAT=../build/metacat.jar

METACAT_CLIENT=../build/metacat-client.jar

UTILITIES=../lib/utilities.jar

METACATURL=http://chico.dyndns.org:8081/knb/metacat

QUERY=../test/performance_measure_query

TIME=2

TOMCATUSER=tao

#copy the java client to build directory

rm -rf ../build/tests/

mkdir ../build/tests

mkdir ../build/tests/edu

mkdir ../build/tests/edu/ucsb

mkdir ../build/tests/edu/ucsb/nceas

mkdir ../build/tests/edu/ucsb/nceas/metacattest

cp ../test/edu/ucsb/nceas/metacattest/MetaCatQueryPerformanceTest.java ../build/tests/edu/ucsb/nceas/metacattest/.

#compile the class

javac -classpath $JUNIT:$METACAT:$METACAT_CLIENT:$UTILITIES ../build/tests/edu/ucsb/nceas/metacattest/MetaCatQueryPerformanceTest.java 

#Iterate to restart postgres and tomcat, and call java client class

for (( i = 0; i < $TIME; i++))

do

    #retart postgres

    /etc/init.d/postgresql-8.2 restart

    #Check if posgres restart successfully

    successPQL=false;

    while [ $successPQL = false ]

    do

      #if found netstat command has posgres lisenter is ready,

      #reset the success value to jump the while loop.

      for fn in `netstat -plt | grep postgres`

      do

        #reset success value

        successPQL=true

      done

    done

    echo "success value for restarting postgres is $successPQL"

    #stop tomcat

    su - $TOMCATUSER /usr/local/devtools/apache-tomcat-5.5.23/bin/shutdown.sh

     #Check if tomcat start successfully

    successStop=false;

    tomcatRunning=false

    while [ $successStop = false ]

    do

      #if found netstat command still has tcomat lisenter (port 8005) ,

      #reset the tomcatRunning value to true

      for fn in `netstat -plt | grep 8005`

      do

        #reset success value

        tomcatRunning=true;

      done

      if [ $tomcatRunning = true ]

         then

           successStop=false

         else

           successStop=true

      fi

    done

    echo "success value for stoping tomcat is $successStop"

    #start tomcat

   su - $TOMCATUSER  /usr/local/devtools/apache-tomcat-5.5.23/bin/startup.sh

    #Check if tomcat start successfully

    successStart=false;

    while [ $successStart = false ]

    do

      #if found netstat command has tcomat lisenter (port 8005) is ready,

      #reset the success value to jump the while loop.

      for fn in `netstat -plt | grep 8005`

      do

        #reset success value

        successStart=true

      done

    done

    echo "success value for starting tomcat is $successStart"

    #run the class -- query the remote metacat

    java -cp $JUNIT:$METACAT:$METACAT_CLIENT:$UTILITIES:../build/tests edu.ucsb.nceas.metacattest.MetaCatQueryPerformanceTest $METACATURL $QUERY

    echo "Successfully query the metacat"

done

#!/bin/sh

#

# Backup files needed for metacat.  This script creates a temporary directory,

# backs up the postgres database, metacat data files, and ldap directory, and 

# then creates a gzipped tar file from those files.  It then writes the backup

# file to a DVD drive and then cleans up any old backup files.

#

# To run this file, install it in /usr/sbin or a similar location and add an

# entry in the root user's crontab to run the command periodically.  The

# following crontab entry would run it every night at 2:00 am

# 0 2 * * *       /usr/sbin/backup-metacat.sh >> $HOME/cron-output 2>&1

#

# This is really just an example script and may not work in your environment

# uless you modify it appropriately.

#

# 13 March 2006 Matt Jones

# Name of the metacat database in postgres to be backed up

DBNAME=metacat

# The day of the week on which the DVD is swapped (1-7, 1=Monday)

# This must be correct or else the write to DVD will not work

SWAPDAY=2

# Number of days of backups to keep online, anything older is removed

DAYSTOKEEP=7

# Device to be used for the DVD writer -- this may vary on your system

DVD=/dev/dvd

#

# Below here lie demons

#

# Set up our umask to protect files from prying eyes

umask 007

# Make a temp dir for the backed up files

TAG=`date +%F-%H%M%S`

DATADIR="/var/metacat"

ARCHROOT="/var/metacat/metacat-backup"

mkdir $ARCHROOT

chgrp postgres $ARCHROOT

chmod g+rwxs $ARCHROOT

ARCHNAME="metacat-backup-$TAG"

ARCHDIR="$ARCHROOT/$ARCHNAME"

mkdir $ARCHDIR

# Shut down the tomcat server so nobody else changes anything while we backup

/etc/init.d/tomcat stop

# Shut down ldap too

/etc/init.d/slapd stop

# Backup postgres

su - postgres -c "pg_dump $DBNAME > $ARCHDIR/metacat-postgres-backup.sql"

# Backup the data files

tar czf $ARCHDIR/datafiles-backup.tgz --exclude=$ARCHROOT $DATADIR

# Backup LDAP to an LDIF file

slapcat -l $ARCHDIR/$DBNAME-ldap.ldif

# Restart LDAP

/etc/init.d/slapd start

# Restart tomcat

/etc/init.d/tomcat start

# Tar up the archive and copy it to archive media

cd $ARCHROOT

tar czf $ARCHDIR.tgz $ARCHNAME

# Clean up the temp files

rm -rf $ARCHDIR

# Write the backup file to DVD

DAY=`date +%u`

DVDFLAG=-M

if [ $DAY == $SWAPDAY ] ; then

  DVDFLAG=-Z

fi

growisofs $DVDFLAG $DVD -R -J $ARCHDIR.tgz

# clean up any of the backup files that are older than DAYSTOKEEP

find $ARCHROOT -mtime +$DAYSTOKEEP -exec rm -f {} \;

#!/bin/bash

#Call a java client class to query metacat automatically and metacat server

#will record the performance data into a file.  This script will be put in /etc/init.d directory

#and called in system booting. After script is down, it will call reboot system too.

#So every time to excecute the quyer, memory will be in fresh.

#Note: before running the script, user should run both "ant jar" and "ant clientjar"

#in Metacat to get metaca-client.jar and metacat.jar in build directory. 

#variables

JUNIT=/usr/local/devtools/apache-ant/lib/junit-4.3.1.jar

PROJECT=/home/tao/project/metacat

METACATURL=http://chico.dyndns.org:8081/knb/metacat

TOMCATUSER=tao

QUERY=$PROJECT/test/performance_measure_query

TIMEFILE=$PROJECT/test/times

METACAT=$PROJECT/build/metacat.jar

METACAT_CLIENT=$PROJECT/build/metacat-client.jar

UTILITIES=$PROJECT/lib/utilities.jar

#copy the java client to build directory

rm -rf $PROJECT/build/tests/

mkdir -p $PROJECT/build/tests/edu/ucsb/nceas/metacattest

cp $PROJECT/test/edu/ucsb/nceas/metacattest/MetaCatQueryPerformanceTest.java $PROJECT/build/tests/edu/ucsb/nceas/metacattest/.

#compile the class

javac -classpath $JUNIT:$METACAT:$METACAT_CLIENT:$UTILITIES $PROJECT/build/tests/edu/ucsb/nceas/metacattest/MetaCatQueryPerformanceTest.java 

case "$1" in

  start)

    echo "Starting running query script"

    #Iterate to restart postgres and tomcat, and call java client class

    TIMES=`cat $TIMEFILE`

    echo "The value from TIMEFILE is $TIMES" 

    #if times greater than 0, it will query the metacat

    if [ $TIMES -gt 0 ]

      then

      #Check if postgres start successfully

      successPQL=false;

      while [ $successPQL = false ]

         do

             #if found netstat command has posgres lisenter is ready,

             #reset the success value to jump the while loop.

             for fn in `netstat -plt | grep postgres`

               do

                 #reset success value

                 successPQL=true

            done

      done

      echo "success value for starting postgres is $successPQL"

      #Check if tomcat start successfully

      successStart=false;

      while [ $successStart = false ]

        do

           #if found netstat command has tcomat lisenter (port 8005) is ready,

           #reset the success value to jump the while loop.

           for fn in `netstat -plt | grep 8005`

             do

                #reset success value

                successStart=true

           done

      done

     echo "success value for starting tomcat is $successStart"

     #run the class -- query the remote metacat

      java -cp $JUNIT:$METACAT:$METACAT_CLIENT:$UTILITIES:$PROJECT/build/tests edu.ucsb.nceas.metacattest.MetaCatQueryPerformanceTest $METACATURL $QUERY

      echo "Successfully query the metacat"

      #Drecease 1 from value of TIMES

      TIMES=`expr $TIMES - 1`

      echo "The new TIMES value  is $TIMES"

      #write the new TIMES to the file

      echo $TIMES >$TIMEFILE

      #reboot machine

      reboot

    fi

   ;;

 stop)

    echo "Stopping running query script - do nothing"

     ;;

  *)

    echo "Usage: /etc/init.d/blah {start|stop}"

    exit 1

    ;;

esac

exit 0

#!/bin/bash

#This file will check if shape files exist or not.

#If one is deleted and a email will be sent to tao with the tomcat log.

#Note: if file eml_message already exists in current dir, email wouldn't send again.

#This setting will make sure only one email will sent. Otherwise, my email account will be over quota.

target_file1=/var/www/org.ecoinformatics.knb/knb/data/metacat_shps/data_points.dbf

target_file2=/var/www/org.ecoinformatics.knb/knb/data/metacat_shps/data_points.shp

target_file3=/var/www/org.ecoinformatics.knb/knb/data/metacat_shps/data_points.shx

target_file4=/var/www/org.ecoinformatics.knb/knb/data/metacat_shps/data_bounds.dbf

target_file5=/var/www/org.ecoinformatics.knb/knb/data/metacat_shps/data_bounds.shp

target_file6=/var/www/org.ecoinformatics.knb/knb/data/metacat_shps/data_bounds.shx

log_file=/var/log/tomcat/catalina.out

sender_email_address=knb_tomcat@ecoinformatics.org

receiver_email_address=tao@nceas.ucsb.edu

tmp=/root/email_message

if [ ! -e $target_file1 -o ! -e $target_file2 -o ! -e $target_file3 -o ! -e $target_file4 -o ! -e $target_file5 -o ! -e $target_file6 ]

 then

   if [ ! -e $tmp ]

     then

       touch $tmp && chmod 600 $tmp

       echo -e "subject: Shape file was deleted at `date`\n" > $tmp

       echo -e "\n log file info: " >> $tmp

       echo -e "\n `tail -300 $log_file`" >> $tmp

       /usr/sbin/sendmail -f $sender_email_address $receiver_email_address < $tmp

   fi

fi

#!/bin/sh

#This script will send a buildIndex command to 

#remote metacat with docid parameter. Then metacat will build index for this docid.

#This script will have one argument - it is a text file name which contains docid list.

#The text file will look like

#nceas.1.1

#nceas.2.1

#nceas.3.1

if  [ $# -ne 1 ]

 then

    echo "USAGE: $0 docidfile"

    exit 1

fi 

echo 'Please type metacat url (It should look like "http://pacific.msi.ucsb.edu:8080/knb/metacat")'

read metacatBaseURL

echo 'Please type KNB user name (It should look like "uid=tao,o=NCEAS,dc=ecoinformatics,dc=org")'

read username

echo 'Please type password'

read password

date

#login to metacat

loginurl="$metacatBaseURL?action=login&username=$username&password=$password"

wget -q -O - --save-cookies cookies --keep-session-cookies "$loginurl"

suffix="?action=buildindex"

metacatURL="$metacatBaseURL$suffix"

FILE=$1

# make sure file exist and readable

if [ ! -f $FILE ]; then 

  	echo "$FILE : does not exists"

  	exit 1

elif [ ! -r $FILE ]; then

  	echo "$FILE: can not read"

  	exit 2

fi

index=0

length=3

# read $FILE using the file descriptors

exec 3<&0

exec 0<$FILE

while read line

do

    if [ "$line" != "" ]

    then

      # construct metacat with given length of docid

      metacatURL="$metacatURL&docid=$line"

      index=`expr $index + 1`

	    if [ $index -eq $length ]

	    then

	       echo "here is url $metacatURL"

	       wget -q -O - --load-cookies cookies "$metacatURL"

	       index=0;

	       metacatURL="$metacatBaseURL$suffix"

	    fi

	fi		

done

#This will send out some remained docid

if [ $index -ne 0 ]

then   

    echo "here is url $metacatURL"

    wget -q -O - --load-cookies cookies "$metacatURL"

fi

exec 0<&3

date

exit 0

<!--

  *  '$RCSfile$'

  *      Authors: Matt Jones

  *    Copyright: 2000 Regents of the University of California and the

  *               National Center for Ecological Analysis and Synthesis

  *  For Details: http://www.nceas.ucsb.edu/

  *

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<p>

Welcome to the Kepler Analytical Repository.  This repository hosts Kepler

analytical components (actors) on the Ecogrid.  You can search for actors,

then download and import them into Kepler.  Eventually, you will be able

to search this repository directly from Kepler.

</p>

<p>&nbsp;</p>

<p><b>Repository Tools</b></p>

<p>

<menu>

<li><span class="searchbox">Search for Components</span><br />

    <menu>

<form method="get" action="@servlet-path@" target="_top">

  <input value="INTERSECT" name="operator" type="hidden">   

  <input size="14" name="anyfield" type="text" value="">

  <input name="action" value="query" type="hidden">

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  <input name="returndoctype" value="entity" type="hidden">

  <input value="Search" type="submit">

</form>

      The repository search system is used to locate analytical components of interest

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      Use a '%' symbol as a wildcard in searches

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  <a href="@servlet-path@?action=query&qformat=kepler&enableediting=false&operator=UNION&returnfield=entity%2F%40name&returnfield=entity%2Fproperty%5B%40name%3D%27karId%27%5D%2F%40value&returnfield=entity%2Fproperty%5B%40name%3D%27KeplerDocumentation%27%5D%2Fproperty%5B%40name%3D%27author%27%5D%2Fconfigure&returnfield=entity%2Fproperty%5B%40name%3D%27KeplerDocumentation%27%5D%2Fproperty%5B%40name%3D%27version%27%5D%2Fconfigure&returnfield=entity%2Fproperty%5B%40name%3D%27KeplerDocumentation%27%5D%2Fproperty%5B%40name%3D%27description%27%5D%2Fconfigure&returnfield=entity%2Fproperty%5B%40name%3D%27KeplerDocumentation%27%5D%2Fproperty%5B%40name%3D%27userLevelDocumentation%27%5D%2Fconfigure&returndoctype=entity&pagestart=0&pagesize=10">Browse existing Kepler analytical components</a>

  <br />

    <menu>

    Browse all existing data sets by title.  This operation can slow as the

    number of entries in the repository grows.

    </menu>

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    <table>

      <tr valign="middle">

        <td align="left" valign="middle" class="text_plain">

        username:</td>

        <td width="173" align="left" class="text_plain" style=

        "padding-top: 2px; padding-bottom: 2px;"><input name="uid"

        type="text" style="width: 140px;" value="kepler"></td>

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        <td height="28" align="left" valign="middle" class=

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        <td width="85" align="left" valign="middle" class=

        "text_plain">password:</td>

        <td colspan="2" align="left" class="text_plain" style=

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          <table width="100%" border="0" cellpadding="0"

          cellspacing="0">

            <tr>

              <td width="150" align="left"><input name="password"

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              class="button_login"></td>

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  <!--

    '$RCSfile$'

    Copyright: 2003 Regents of the University of California and the

               National Center for Ecological Analysis and Synthesis

     '$Author$'

       '$Date$'

   '$Revision$'

   This program is free software; you can redistribute it and/or modify

   it under the terms of the GNU General Public License as published by

   the Free Software Foundation; either version 2 of the License, or

   (at your option) any later version.

   This program is distributed in the hope that it will be useful,

   but WITHOUT ANY WARRANTY; without even the implied warranty of

   MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the

   GNU General Public License for more details.

   You should have received a copy of the GNU General Public License

   along with this program; if not, write to the Free Software

   Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA  02111-1307  USA

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    <td class="spacerrow" valign="top" colspan="4">&nbsp;</td>

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    <td valign="top" width="20%"> 

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Search for Data<br />

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<form method="POST" action="@servlet-path@" target="_top">

Search for: 

  <input value="INTERSECT" name="operator" type="hidden">   

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<!--

  *  '$RCSfile$'

  *    Copyright: 2004 Regents of the University of California and the

  *               National Center for Ecological Analysis and Synthesis

  *  For Details: http://www.nceas.ucsb.edu/

  *

  *   '$Author$'

  *     '$Date$'

  * '$Revision$'

  * 

  * This is an HTML document for displaying metadata catalog tools

  *

  * This program is free software; you can redistribute it and/or modify

  * it under the terms of the GNU General Public License as published by

  * the Free Software Foundation; either version 2 of the License, or

  * (at your option) any later version.

  *

  * This program is distributed in the hope that it will be useful,

  * but WITHOUT ANY WARRANTY; without even the implied warranty of

  * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the

  * GNU General Public License for more details.

  *

  * You should have received a copy of the GNU General Public License

  * along with this program; if not, write to the Free Software

  * Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA  02111-1307  USA

-->

<!DOCTYPE html PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN">

<html>

<head>

<title>LTSS Data Registry</title>

<link rel="stylesheet" href="@html-path@/style/default.css" type="text/css">

  <link rel="stylesheet" type="text/css" 

        href="@systemidserver@@style-skins-path@/ltss/ltss.css"></link>

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          src="@systemidserver@@style-skins-path@/ltss/ltss.js"></script>

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<table width="760" border="0" cellspacing="0" cellpadding="0">

  <tr><td colspan="5">

<p>

Welcome to the Long-term Studies Section Data Registry. This is a publically 

accessible registry describing <b>scientific data sets on ecology and the

environment</b>.  In this context, we refer to a data set as the collection

of data tables and objects that are associated with a study, experiment,

or monitoring program.  Exactly what constitutes a data set is determined

by each submitter.  Credit for the datasets in this registry goes to the

investigators who collected the data (see each individual registry entry

for citation and attribution information as well as usage rights).

</p>

</td></tr>

<tr><td colspan="5">

<p><b>Registry Tools</b></p>

<p>

<menu>

<li><span class="searchbox">Search for Data</span><br />

    <menu>

<form method="POST" action="@servlet-path@" target="_top">

  <input value="INTERSECT" name="operator" type="hidden">   

  <input size="14" name="anyfield" type="text" value="">

  <!-- <input name="organizationName" value="Long-term Studies Section" type="hidden">-->

  <input name="action" value="query" type="hidden">

  <input name="qformat" value="ltss" type="hidden">

  <input name="enableediting" value="true" type="hidden">

  <input name="operator" value="UNION" type="hidden">

  <input name="returnfield" value="originator/individualName/surName" type="hidden">

  <input name="returnfield" value="originator/individualName/givenName" type="hidden">

  <input name="returnfield" value="creator/individualName/surName" type="hidden">

  <input name="returnfield" value="creator/individualName/givenName" type="hidden">

  <input name="returnfield" value="originator/organizationName" type="hidden">

  <input name="returnfield" value="creator/organizationName" type="hidden">

  <input name="returnfield" value="dataset/title" type="hidden">

  <input name="returnfield" value="keyword" type="hidden">

  <input name="returndoctype" value="eml://ecoinformatics.org/eml-2.0.1" type="hidden">

  <input name="returndoctype" value="eml://ecoinformatics.org/eml-2.0.0" type="hidden">

  <input name="returndoctype" value="-//ecoinformatics.org//eml-dataset-2.0.0beta6//EN" type="hidden">

  <input name="returndoctype" value="-//ecoinformatics.org//eml-dataset-2.0.0beta4//EN" type="hidden">

  <input name="returndoctype" value="-//NCEAS//resource//EN" type="hidden">

  <input name="returndoctype" value="-//NCEAS//eml-dataset//EN" type="hidden">

  <input value="Search" type="submit">

</form>

      The registry search system is used to locate data sets of interest

      by searching through existing registered data sets.  

      Presently the search covers all fields, including

      author, title, abstract, keywords, and other documentation

      for each dataset.  Use a '%' symbol as a wildcard in searches

      (e.g., '%biodiversity%' would locate any phrase with the word

      biodiversity embedded within it).

      </menu>

  </li>

  <li><a href="@servlet-path@?action=query&amp;operator=INTERSECT&amp;anyfield=%25&amp;qformat=ltss&amp;enableediting=true&amp;returndoctype=eml://ecoinformatics.org/eml-2.0.1&amp;returndoctype=eml://ecoinformatics.org/eml-2.0.0&amp;returndoctype=-//ecoinformatics.org//eml-dataset-2.0.0beta6//EN&amp;returndoctype=-//ecoinformatics.org//eml-dataset-2.0.0beta4//EN&amp;returnfield=dataset/title&amp;returnfield=keyword&amp;returnfield=originator/individualName/surName&amp;returnfield=creator/individualName/surName&amp;returnfield=originator/organizationName&amp;returnfield=creator/organizationName">Browse data sets</a><br />

    <menu>

    Browse all existing data sets by title.  This operation can be slow as the

    number of entries in the registry grows.

    </menu>

  </li>

  <p>&nbsp;</p>

  <li><a href="@cgi-prefix@/register-dataset.cgi?cfg=ltss">Register a new 

       data set</a><br />

    <menu>

      The registration page is used to submit information about a <b>new</b>

      data set regarding ecology or the environment.  The documentation about 

      the data set will be submitted to the Registry.  You (and only

      you, or your designee) can return to edit the entry

      at a later point in time to add to or correct the

      description.  You can also use other tools such as <a

      href="http://knb.ecoinformatics.org/morphoportal.jsp">Morpho</a> to

      further document the set of data and directly attach the data to the

      registry entry.

    </menu>

  </li>

  <p>&nbsp;</p>

  <li><a href="@cgi-prefix@/ldapweb.cgi?cfg=ltss">Create a new account</a>

    <ul>

        <li><a href="@cgi-prefix@/ldapweb.cgi?cfg=ltss&amp;stage=changepass">Change your password</a>

        <li><a href="@cgi-prefix@/ldapweb.cgi?cfg=ltss&amp;stage=resetpass">Reset your password</a>

    </ul>

    <br />

    <menu>

      The account management tools are used to create and manage registry 

      accounts.   Accounts are free, and are used to identify contributors

      so that they can maintain their entries in the future.  

    </menu>

  </li>

</menu>

</p>

  </td></tr>

  <tr><td>

    <p>

    This project is a cooperative effort of the <a

    href="http://www.esa.org/longterm/">Long-Term Studies Section (LTSS)</a>

    of the ESA, the <a href="http://www.nceas.ucsb.edu">National

    Center for Ecological Analysis and Synthesis (NCEAS)</a> and the <a

    href="http://www.lternet.edu">Long-Term Ecological Research Network

    (LTER)</a>.  The Data Registry is based on software developed by

    the <a href="http://knb.ecoinformatics.org">Knowledge Network for

    Biocomplexity (KNB)</a>, and houses metadata that are compliant with <a

    href="http://knb.ecoinformatics.org/software/eml/">Ecological Metadata

    Language (EML)</a>.  Consequently, data registered in this registry

    also are accessible from the larger collection of data found in the

    <a href="http://knb.ecoinformatics.org">KNB registry</a>.  Other sites

    contributing to the KNB registry include:

    <ul>

    <li><a href="http://knb.ecoinformatics.org/knb/obfs">Organization of

    Biological Field Stations registry</a>  </li>

    <li><a href="http://knb.ecoinformatics.org/knb/style/skins/nrs">UC

    Natural Reserve System registry</a>  </li>

    <li><a href="http://knb.ecoinformatics.org/knb/style/skins/nceas">NCEAS

    registry</a>  </li>

    <li><a href="http://knb.ecoinformatics.org/knb/style/skins/specnet">

    SpecNet registry</a>  </li>

    </ul>

    </p>

  </td></tr>

</table>

<p>&nbsp;</p>

<p>&nbsp;</p>

<script language="JavaScript">          

    insertTemplateClosing();

</script>

</body>

</html>

  <!--

    '$RCSfile$'

    Copyright: 2004 Regents of the University of California and the

               National Center for Ecological Analysis and Synthesis

     '$Author$'

       '$Date$'

   '$Revision$'

   This program is free software; you can redistribute it and/or modify

   it under the terms of the GNU General Public License as published by

   the Free Software Foundation; either version 2 of the License, or

   (at your option) any later version.

   This program is distributed in the hope that it will be useful,

   but WITHOUT ANY WARRANTY; without even the implied warranty of

   MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the

   GNU General Public License for more details.

   You should have received a copy of the GNU General Public License

   along with this program; if not, write to the Free Software

   Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA  02111-1307  USA

  -->

<!--____________________________max_width____________________________________-->

<!DOCTYPE html PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN">

<html>

<head>

  <title>LTSS Data Registry</title>

  <link rel="stylesheet" type="text/css" 

        href="@systemidserver@@style-skins-path@/ltss/ltss.css"></link>

</head>

<body>

<table width="760" border="0" cellspacing="0" cellpadding="0">

  <tr> 

    <td rowspan="3" width="20%" valign="top"> 

      <div align="left"><img src="@systemidserver@@style-skins-path@/ltss/ltss-logo.gif"></div>

    </td>

    <td valign="middle" colspan="4" class="title">LTSS Data Registry</td>

  </tr>

  <tr> 

    <td class="spacerrow" valign="top" colspan="4">&nbsp;</td>

  </tr>

  <tr> 

    <td valign="top" width="20%"> 

      <p><a href="http://www.esa.org/longterm" target="_top"> LTSS Home</a></p>

    </td>

    <td valign="top" width="20%"> 

      <p><a href="@systemidserver@@style-skins-path@/ltss/index.html" target="_top">Registry Home</a></p>

    </td>

    <td valign="top" width="20%"> 

      <p><a href="@cgi-prefix@/register-dataset.cgi?cfg=ltss" target="_top">Register a <br>New Data Set</a></p>

    </td>

    <td valign="top" width="20%"> 

<p class="searchbox">

Search for Data<br />

<form method="POST" action="@servlet-path@" target="_top">

  <input value="INTERSECT" name="operator" type="hidden">   

  <input size="14" name="anyfield" type="text" value="">

  <!-- <input name="organizationName" value="Long-term Studies Section" type="hidden">-->

  <input name="action" value="query" type="hidden">

  <input name="qformat" value="ltss" type="hidden">

  <input name="enableediting" value="true" type="hidden">

  <input name="operator" value="UNION" type="hidden">

  <input name="returnfield" value="originator/individualName/surName" type="hidden">

  <input name="returnfield" value="originator/individualName/givenName" type="hidden">

  <input name="returnfield" value="creator/individualName/surName" type="hidden">

  <input name="returnfield" value="creator/individualName/givenName" type="hidden">

  <input name="returnfield" value="originator/organizationName" type="hidden">

  <input name="returnfield" value="creator/organizationName" type="hidden">

  <input name="returnfield" value="dataset/title" type="hidden">

  <input name="returnfield" value="keyword" type="hidden">

  <input name="returndoctype" value="eml://ecoinformatics.org/eml-2.0.1" type="hidden">

  <input name="returndoctype" value="eml://ecoinformatics.org/eml-2.0.0" type="hidden">

  <input name="returndoctype" value="-//ecoinformatics.org//eml-dataset-2.0.0beta6//EN" type="hidden">

  <input name="returndoctype" value="-//ecoinformatics.org//eml-dataset-2.0.0beta4//EN" type="hidden">

  <input name="returndoctype" value="-//NCEAS//resource//EN" type="hidden">

  <input name="returndoctype" value="-//NCEAS//eml-dataset//EN" type="hidden">

  <!-- <input value="Start Search" type="submit"> -->

</form>

</p>

    </td>

  </tr>

</table>

</body>

</html>

<form method="POST" action="@servlet-path@" target="_top">

Search for: 

  <input value="INTERSECT" name="operator" type="hidden">   

  <input size="14" name="anyfield" type="text" value="">

  <!--<input name="organizationName" value="Long-term Studies Section" type="hidden">-->

  <input name="action" value="query" type="hidden">

  <input name="qformat" value="ltss" type="hidden">

  <input name="enableediting" value="true" type="hidden">

  <input name="operator" value="UNION" type="hidden">

  <input name="returnfield" value="originator/individualName/surName" type="hidden">

  <input name="returnfield" value="originator/individualName/givenName" type="hidden">

  <input name="returnfield" value="creator/individualName/surName" type="hidden">

  <input name="returnfield" value="creator/individualName/givenName" type="hidden">

  <input name="returnfield" value="originator/organizationName" type="hidden">

  <input name="returnfield" value="creator/organizationName" type="hidden">

  <input name="returnfield" value="dataset/title" type="hidden">

  <input name="returnfield" value="keyword" type="hidden">

  <input name="returndoctype" value="eml://ecoinformatics.org/eml-2.0.1" type="hidden">

  <input name="returndoctype" value="eml://ecoinformatics.org/eml-2.0.0" type="hidden">

  <input name="returndoctype" value="-//ecoinformatics.org//eml-dataset-2.0.0beta6//EN" type="hidden">

  <input name="returndoctype" value="-//ecoinformatics.org//eml-dataset-2.0.0beta4//EN" type="hidden">

  <input name="returndoctype" value="-//NCEAS//resource//EN" type="hidden">

  <input name="returndoctype" value="-//NCEAS//eml-dataset//EN" type="hidden">

  <input value="Start Search" type="submit">

</form>

<form method="POST" action="@servlet-path@" target="_top">

Search for: 

  <input value="INTERSECT" name="operator" type="hidden">   

  <input size="14" name="anyfield" type="text" value="">

  <!-- <input name="organizationName" value="Kruger National Park" type="hidden"> -->

  <input name="action" value="query" type="hidden">

  <input name="qformat" value="knp" type="hidden">

  <input name="enableediting" value="false" type="hidden">

  <input name="operator" value="UNION" type="hidden">

  <input name="returnfield" value="originator/individualName/surName" type="hidden">

  <input name="returnfield" value="originator/individualName/givenName" type="hidden">

  <input name="returnfield" value="creator/individualName/surName" type="hidden">

  <input name="returnfield" value="creator/individualName/givenName" type="hidden">

  <input name="returnfield" value="originator/organizationName" type="hidden">

  <input name="returnfield" value="creator/organizationName" type="hidden">

  <input name="returnfield" value="dataset/title" type="hidden">

  <input name="returnfield" value="keyword" type="hidden">

  <input name="returndoctype" value="eml://ecoinformatics.org/eml-2.0.1" type="hidden">

  <input name="returndoctype" value="eml://ecoinformatics.org/eml-2.0.0" type="hidden">

  <input name="returndoctype" value="-//ecoinformatics.org//eml-dataset-2.0.0beta6//EN" type="hidden">

  <input name="returndoctype" value="-//ecoinformatics.org//eml-dataset-2.0.0beta4//EN" type="hidden">

  <input name="returndoctype" value="-//NCEAS//resource//EN" type="hidden">

  <input name="returndoctype" value="-//NCEAS//eml-dataset//EN" type="hidden">

  <input value="Start Search" type="submit">

</form>

					metacat = MetacatFactory.createMetacatConnection(METACAT_URL);

					throw new ServletException("Metacat connection to "+METACAT_URL

					throw new ServletException("Metacat connection to "+METACAT_URL

				<li>METACAT_URL:&nbsp;<%=METACAT_URL%></li>

<%@page import="edu.ucsb.nceas.metacat.MetaCatUtil"%>

<!--

  *   '$RCSfile$'

  *     Authors: Matthew Brooke

  *   Copyright: 2000 Regents of the University of California and the

  *              National Center for Ecological Analysis and Synthesis

  * For Details: http://www.nceas.ucsb.edu/

  *

  *    '$Author$'

  *      '$Date$'

  *  '$Revision$'

  *

  * Settings file for the default metacat skin

  *

  * This program is free software; you can redistribute it and/or modify

  * it under the terms of the GNU General Public License as published by

  * the Free Software Foundation; either version 2 of the License, or

  * (at your option) any later version.

  *

  * This program is distributed in the hope that it will be useful,

  * but WITHOUT ANY WARRANTY; without even the implied warranty of

  * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the

  * GNU General Public License for more details.

  *

  * You should have received a copy of the GNU General Public License

  * along with this program; if not, write to the Free Software

  * Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA  02111-1307  USA

-->

// GLOBAL CONSTANTS FOR KNB PORTAL PAGE /////////////////////////////////////

   // CONTEXT NAME of metacat installed:

	String      CONTEXT_NAME          = request.getContextPath();

	// URL of SERVER with context (and optional port)

	String     SERVER_URL_WITH_CONTEXT =  request.getScheme() + "://" + request.getServerName();

	if ( request.getLocalPort() != 80 ) {

		SERVER_URL_WITH_CONTEXT += ":" + request.getLocalPort();

	}

	SERVER_URL_WITH_CONTEXT += CONTEXT_NAME;

	// URL of metacat to be used for login & searching:

	String      METACAT_URL           =  SERVER_URL_WITH_CONTEXT+ "/metacat";

	// URL for LDAP login

	String LDAP_CGI_PREFIX = MetaCatUtil.getOption("cgi-prefix");

	// label for logout form button when user *is* logged in:

	String      LOGOUT_LABEL          = "Logout";

	// label for login form button when user is *not* logged in:

	String      LOGIN_LABEL           = "Login";

	// last part of LDAP username to be appended after organization

	String      LDAP_DOMAIN           = ",dc=ecoinformatics,dc=org";

    boolean     DEBUG_TO_BROWSER      = false;

	String      COMMON_SEARCH_METACAT_POST_FIELDS   =

							 "<input type=\"hidden\" name=\"action\"        value=\"query\"\\>\n"

              +"<input type=\"hidden\" name=\"qformat\"       value=\"default\"\\>\n"

              +"<input type=\"hidden\" name=\"returnfield\"   value=\"originator/individualName/surName\"\\>\n"

              +"<input type=\"hidden\" name=\"returnfield\"   value=\"originator/individualName/givenName\"\\>\n"

              +"<input type=\"hidden\" name=\"returnfield\"   value=\"originator/organizationName\"\\>\n"

              +"<input type=\"hidden\" name=\"returnfield\"   value=\"creator/individualName/surName\"\\>\n"

              +"<input type=\"hidden\" name=\"returnfield\"   value=\"creator/organizationName\"\\>\n"

              +"<input type=\"hidden\" name=\"returnfield\"   value=\"dataset/title\"\\>\n"

              +"<input type=\"hidden\" name=\"returnfield\"   value=\"keyword\"\\>\n"

              +"<input type=\"hidden\" name=\"returndoctype\" value=\"-//ecoinformatics.org//eml-dataset-2.0.0beta6//EN\"\\>\n"

              +"<input type=\"hidden\" name=\"returndoctype\" value=\"-//ecoinformatics.org//eml-dataset-2.0.0beta4//EN\"\\>\n"

              +"<input type=\"hidden\" name=\"returndoctype\" value=\"eml://ecoinformatics.org/eml-2.0.0\"\\>\n"

              +"<input type=\"hidden\" name=\"returndoctype\" value=\"eml://ecoinformatics.org/eml-2.0.1\"\\>\n"

              +"<input type=\"hidden\" name=\"returndoctype\" value=\"-//NCEAS//eml-dataset-2.0//EN\"\\>\n"

              +"<input type=\"hidden\" name=\"returndoctype\" value=\"-//NCEAS//resource//EN\"\\>\n";

	String      SIMPLE_SEARCH_METACAT_POST_FIELDS   =

							  "<input type=\"hidden\" name=\"operator\"      value=\"UNION\"\\>\n"

                +COMMON_SEARCH_METACAT_POST_FIELDS;

	String      ADVANCED_SEARCH_METACAT_POST_FIELDS   =

							  "<input type=\"hidden\" name=\"operator\"      value=\"INTERSECT\"\\>\n"

                +COMMON_SEARCH_METACAT_POST_FIELDS;

/*******************************************************************************/

/*******************************************************************************/