Remove the organization configuration stuff for the moment. Add geoserver configuration.
use context url to get cgi url
Change discoverTomcatDir to discoverDeployDir
Fix error where maxconnectionnumber was being read into maxconnectionage.
Create data and inline data directories
Fully qualify spatial and replication properties
Qualify harvester properties
Replace tomcatDir with deployDir
Use qualified properties
use the docid, not the filename when updating this node.fixes bug: http://bugzilla.ecoinformatics.org/show_bug.cgi?id=3260
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