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/**
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* '$RCSfile$'
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* Purpose: A Class that searches a relational DB for elements and
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* attributes that have free text matches a query string,
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* or structured query matches to a path specified node in the
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* XML hierarchy. It returns a result set consisting of the
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* document ID for each document that satisfies the query
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* Copyright: 2000 Regents of the University of California and the
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* National Center for Ecological Analysis and Synthesis
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* Authors: Matt Jones
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* Release: @release@
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*
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* '$Author: bojilova $'
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* '$Date: 2000-09-12 10:37:07 -0700 (Tue, 12 Sep 2000) $'
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* '$Revision: 441 $'
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*/
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package edu.ucsb.nceas.metacat;
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import java.io.*;
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import java.util.Vector;
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import java.net.URL;
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import java.net.MalformedURLException;
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import java.sql.*;
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import java.util.Stack;
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import java.util.Hashtable;
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import java.util.Enumeration;
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/**
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* A Class that searches a relational DB for elements and
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* attributes that have free text matches a query string,
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* or structured query matches to a path specified node in the
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* XML hierarchy. It returns a result set consisting of the
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* document ID for each document that satisfies the query
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*/
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public class DBQuery {
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static final int ALL = 1;
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static final int WRITE = 2;
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static final int READ = 4;
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private Connection conn = null;
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private String parserName = null;
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/**
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* the main routine used to test the DBQuery utility.
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* <p>
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* Usage: java DBQuery <xmlfile>
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*
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* @param xmlfile the filename of the xml file containing the query
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*/
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static public void main(String[] args) {
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if (args.length < 1)
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{
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System.err.println("Wrong number of arguments!!!");
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System.err.println("USAGE: java DBQuery <xmlfile>");
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return;
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} else {
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try {
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String xmlfile = args[0];
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// Open a connection to the database
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MetaCatUtil util = new MetaCatUtil();
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Connection dbconn = util.openDBConnection();
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// Execute the query
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DBQuery queryobj = new DBQuery(dbconn, util.getOption("saxparser"));
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FileReader xml = new FileReader(new File(xmlfile));
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Hashtable nodelist = null;
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nodelist = queryobj.findDocuments(xml, null, null);
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// Print the reulting document listing
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StringBuffer result = new StringBuffer();
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String document = null;
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String docid = null;
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result.append("<?xml version=\"1.0\"?>\n");
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result.append("<resultset>\n");
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// following line removed by Dan Higgins to avoid insertion of query XML inside returned XML doc
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// result.append(" <query>" + xmlfile + "</query>\n");
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Enumeration doclist = nodelist.keys();
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while (doclist.hasMoreElements()) {
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docid = (String)doclist.nextElement();
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document = (String)nodelist.get(docid);
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result.append(" <document>\n " + document +
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"\n </document>\n");
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}
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result.append("</resultset>\n");
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System.out.println(result);
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} catch (Exception e) {
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System.err.println("EXCEPTION HANDLING REQUIRED");
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System.err.println(e.getMessage());
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e.printStackTrace(System.err);
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}
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}
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}
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/**
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* construct an instance of the DBQuery class
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*
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* <p>Generally, one would call the findDocuments() routine after creating
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* an instance to specify the search query</p>
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*
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* @param conn the JDBC connection that we use for the query
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* @param parserName the fully qualified name of a Java class implementing
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* the org.xml.sax.XMLReader interface
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*/
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public DBQuery( Connection conn, String parserName )
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throws IOException,
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SQLException,
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ClassNotFoundException {
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this.conn = conn;
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this.parserName = parserName;
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}
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/**
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* routine to search the elements and attributes looking to match query
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*
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* @param xmlquery the xml serialization of the query (@see pathquery.dtd)
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*/
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public Hashtable findDocuments(Reader xmlquery, String user, String group) {
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Hashtable docListResult = new Hashtable();
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PreparedStatement pstmt;
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String docid = null;
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String docname = null;
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String doctype = null;
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String doctitle = null;
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String createDate = null;
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String updateDate = null;
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String fieldname = null;
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String fielddata = null;
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StringBuffer document = null;
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try {
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// Get the XML query and covert it into a SQL statment
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QuerySpecification qspec = new QuerySpecification(xmlquery,
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parserName);
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//System.out.println(qspec.printSQL());
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pstmt = conn.prepareStatement( qspec.printSQL() );
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// Execute the SQL query using the JDBC connection
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pstmt.execute();
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ResultSet rs = pstmt.getResultSet();
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boolean tableHasRows = rs.next();
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while (tableHasRows) {
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docid = rs.getString(1);
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if ( !hasReadPermission(conn, docid, user, group) ) {continue;}
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docname = rs.getString(2);
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doctype = rs.getString(3);
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doctitle = rs.getString(4);
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createDate = rs.getString(5);
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updateDate = rs.getString(6);
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document = new StringBuffer();
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document.append("<docid>").append(docid).append("</docid>");
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if (docname != null) {
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document.append("<docname>" + docname + "</docname>");
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}
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if (doctype != null) {
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document.append("<doctype>" + doctype + "</doctype>");
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}
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if (doctitle != null) {
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document.append("<doctitle>" + doctitle + "</doctitle>");
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}
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if(createDate != null) {
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document.append("<createdate>" + createDate + "</createdate>");
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}
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if(updateDate != null) {
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document.append("<updatedate>" + updateDate + "</updatedate>");
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}
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// Store the document id and the root node id
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docListResult.put(docid,(String)document.toString());
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// Advance to the next record in the cursor
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tableHasRows = rs.next();
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}
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if(qspec.containsExtendedSQL())
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{
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Vector extendedFields = new Vector(qspec.getReturnFieldList());
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Vector results = new Vector();
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pstmt = conn.prepareStatement(qspec.printExtendedSQL());
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pstmt.execute();
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rs = pstmt.getResultSet();
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tableHasRows = rs.next();
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while(tableHasRows)
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{
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docid = rs.getString(1);
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if ( !hasReadPermission(conn, docid, user, group) ) {continue;}
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fieldname = rs.getString(2);
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fielddata = rs.getString(3);
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document = new StringBuffer();
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document.append("<param name=\"");
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document.append(fieldname);
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document.append("\">");
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document.append(fielddata);
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document.append("</param>");
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tableHasRows = rs.next();
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if(docListResult.containsKey(docid))
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{
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String removedelement = (String)docListResult.remove(docid);
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docListResult.put(docid, removedelement + document.toString());
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}
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else
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{
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docListResult.put(docid, document.toString());
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}
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}
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}
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pstmt.close();
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} catch (SQLException e) {
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System.err.println("Error getting id: " + e.getMessage());
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} catch (IOException ioe) {
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System.err.println("Error printing qspec:");
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System.err.println(ioe.getMessage());
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}
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//System.out.println("docListResult: ");
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//System.out.println(docListResult.toString());
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return docListResult;
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}
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/**
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* returns a string array of the contents of a particular node.
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* If the node appears more than once, the contents are returned
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* in the order in which they appearred in the document.
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* @param nodename the name or path of the particular node.
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* @param docid the docid of the document you want the node from.
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* @param conn a database connection-this allows this method to be static
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*/
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public static Object[] getNodeContent(String nodename, String docid,
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Connection conn)
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{
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StringBuffer query = new StringBuffer();
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Vector result = new Vector();
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PreparedStatement pstmt;
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query.append("select nodedata from xml_nodes where parentnodeid in ");
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query.append("(select nodeid from xml_index where path like '");
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query.append(nodename);
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query.append("' and docid like '").append(docid).append("')");
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try
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{
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pstmt = conn.prepareStatement(query.toString());
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// Execute the SQL query using the JDBC connection
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pstmt.execute();
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ResultSet rs = pstmt.getResultSet();
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boolean tableHasRows = rs.next();
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while (tableHasRows)
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{
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result.add(rs.getString(1));
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System.out.println(rs.getString(1));
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tableHasRows = rs.next();
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}
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}
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catch (SQLException e)
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{
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System.err.println("Error getting id: " + e.getMessage());
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}
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return result.toArray();
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}
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/**
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* format a structured query as an XML document that conforms
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* to the pathquery.dtd and is appropriate for submission to the DBQuery
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* structured query engine
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*
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* @param params The list of parameters that should be included in the query
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*/
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public static String createSQuery(Hashtable params)
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{
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StringBuffer query = new StringBuffer();
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Enumeration elements;
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Enumeration keys;
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String doctype = null;
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String casesensitive = null;
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String searchmode = null;
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Object nextkey;
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Object nextelement;
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//add the xml headers
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query.append("<?xml version=\"1.0\"?>\n");
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query.append("<pathquery version=\"1.0\"><meta_file_id>");
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if(params.containsKey("meta_file_id"))
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{
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query.append( ((String[])params.get("meta_file_id"))[0]);
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query.append("</meta_file_id>");
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}
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else
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{
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query.append("unspecified</meta_file_id>");
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}
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query.append("<querytitle>");
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if(params.containsKey("querytitle"))
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{
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305
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query.append(((String[])params.get("querytitle"))[0]);
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query.append("</querytitle>");
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}
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else
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{
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310
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query.append("unspecified</querytitle>");
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}
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if(params.containsKey("doctype"))
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{
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315
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doctype = ((String[])params.get("doctype"))[0];
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}
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317
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else
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{
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doctype = "ANY";
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320
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}
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321
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if(params.containsKey("returnfield"))
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{
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324
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String[] returnfield = ((String[])params.get("returnfield"));
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for(int i=0; i<returnfield.length; i++)
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326
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{
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327
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query.append("<returnfield>").append(returnfield[i]);
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328
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query.append("</returnfield>");
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329
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}
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330
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}
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331
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//if you don't limit the query by doctype, then it just creates
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//an empty returndoctype tag.
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if (!doctype.equals("any") &&
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335
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!doctype.equals("ANY") &&
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336
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!doctype.equals("") )
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337
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{
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338
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query.append("<returndoctype>");
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339
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query.append(doctype).append("</returndoctype>");
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340
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}
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341
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else
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{
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query.append("<returndoctype></returndoctype>");
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344
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}
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345
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346
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//allows the dynamic switching of boolean operators
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347
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if(params.containsKey("operator"))
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348
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{
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349
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query.append("<querygroup operator=\"" +
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350
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((String[])params.get("operator"))[0] + "\">");
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351
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}
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352
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else
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353
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{ //the default operator is UNION
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354
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query.append("<querygroup operator=\"UNION\">");
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355
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}
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356
|
|
357
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if(params.containsKey("casesensitive"))
|
358
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{
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359
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casesensitive = ((String[])params.get("casesensitive"))[0];
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360
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}
|
361
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else
|
362
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{
|
363
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casesensitive = "false";
|
364
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}
|
365
|
|
366
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if(params.containsKey("searchmode"))
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367
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{
|
368
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searchmode = ((String[])params.get("searchmode"))[0];
|
369
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}
|
370
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else
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371
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{
|
372
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searchmode = "contains";
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373
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}
|
374
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|
375
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//anyfield is a special case because it does a
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376
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//free text search. It does not have a <pathexpr>
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377
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//tag. This allows for a free text search within the structured
|
378
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//query. This is useful if the INTERSECT operator is used.
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379
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if(params.containsKey("anyfield"))
|
380
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{
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381
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String[] anyfield = ((String[])params.get("anyfield"));
|
382
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//allow for more than one value for anyfield
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383
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for(int i=0; i<anyfield.length; i++)
|
384
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{
|
385
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if(!anyfield[i].equals(""))
|
386
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{
|
387
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query.append("<queryterm casesensitive=\"" + casesensitive +
|
388
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"\" " + "searchmode=\"" + searchmode + "\"><value>" +
|
389
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anyfield[i] +
|
390
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"</value></queryterm>");
|
391
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}
|
392
|
}
|
393
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}
|
394
|
|
395
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//this while loop finds the rest of the parameters
|
396
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//and attempts to query for the field specified
|
397
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//by the parameter.
|
398
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elements = params.elements();
|
399
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keys = params.keys();
|
400
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while(keys.hasMoreElements() && elements.hasMoreElements())
|
401
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{
|
402
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nextkey = keys.nextElement();
|
403
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nextelement = elements.nextElement();
|
404
|
|
405
|
//make sure we aren't querying for any of these
|
406
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//parameters since the are already in the query
|
407
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//in one form or another.
|
408
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if(!nextkey.toString().equals("doctype") &&
|
409
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!nextkey.toString().equals("action") &&
|
410
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!nextkey.toString().equals("qformat") &&
|
411
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!nextkey.toString().equals("anyfield") &&
|
412
|
!nextkey.toString().equals("returnfield") &&
|
413
|
!nextkey.toString().equals("operator") )
|
414
|
{
|
415
|
//allow for more than value per field name
|
416
|
for(int i=0; i<((String[])nextelement).length; i++)
|
417
|
{
|
418
|
if(!((String[])nextelement)[i].equals(""))
|
419
|
{
|
420
|
query.append("<queryterm casesensitive=\"" + casesensitive +"\" " +
|
421
|
"searchmode=\"" + searchmode + "\">" +
|
422
|
"<value>" +
|
423
|
//add the query value
|
424
|
((String[])nextelement)[i] +
|
425
|
"</value><pathexpr>" +
|
426
|
//add the path to query by
|
427
|
nextkey.toString() +
|
428
|
"</pathexpr></queryterm>");
|
429
|
}
|
430
|
}
|
431
|
}
|
432
|
}
|
433
|
query.append("</querygroup></pathquery>");
|
434
|
//append on the end of the xml and return the result as a string
|
435
|
return query.toString();
|
436
|
}
|
437
|
|
438
|
/**
|
439
|
* format a simple free-text value query as an XML document that conforms
|
440
|
* to the pathquery.dtd and is appropriate for submission to the DBQuery
|
441
|
* structured query engine
|
442
|
*
|
443
|
* @param value the text string to search for in the xml catalog
|
444
|
* @param doctype the type of documents to include in the result set -- use
|
445
|
* "any" or "ANY" for unfiltered result sets
|
446
|
*/
|
447
|
public static String createQuery(String value, String doctype) {
|
448
|
StringBuffer xmlquery = new StringBuffer();
|
449
|
xmlquery.append("<?xml version=\"1.0\"?>\n");
|
450
|
xmlquery.append("<pathquery version=\"1.0\">");
|
451
|
xmlquery.append("<meta_file_id>Unspecified</meta_file_id>");
|
452
|
xmlquery.append("<querytitle>Unspecified</querytitle>");
|
453
|
|
454
|
if (!doctype.equals("any") && !doctype.equals("ANY")) {
|
455
|
xmlquery.append("<returndoctype>");
|
456
|
xmlquery.append(doctype).append("</returndoctype>");
|
457
|
}
|
458
|
|
459
|
xmlquery.append("<querygroup operator=\"UNION\">");
|
460
|
//chad added - 8/14
|
461
|
//the if statement allows a query to gracefully handle a null
|
462
|
//query. Without this if a nullpointerException is thrown.
|
463
|
if(!value.equals(""))
|
464
|
{
|
465
|
xmlquery.append("<queryterm casesensitive=\"false\" ");
|
466
|
xmlquery.append("searchmode=\"contains\">");
|
467
|
xmlquery.append("<value>").append(value).append("</value>");
|
468
|
xmlquery.append("</queryterm>");
|
469
|
}
|
470
|
xmlquery.append("</querygroup>");
|
471
|
xmlquery.append("</pathquery>");
|
472
|
|
473
|
|
474
|
return (xmlquery.toString());
|
475
|
}
|
476
|
|
477
|
/**
|
478
|
* format a simple free-text value query as an XML document that conforms
|
479
|
* to the pathquery.dtd and is appropriate for submission to the DBQuery
|
480
|
* structured query engine
|
481
|
*
|
482
|
* @param value the text string to search for in the xml catalog
|
483
|
*/
|
484
|
public static String createQuery(String value) {
|
485
|
return createQuery(value, "any");
|
486
|
}
|
487
|
|
488
|
/** Check for "read" permissions from DB connection */
|
489
|
private boolean hasReadPermission(Connection conn, String docid,
|
490
|
String user, String group)
|
491
|
throws SQLException {
|
492
|
// b' of the command line invocation
|
493
|
if ( (user == null) && (group == null) ) {
|
494
|
return true;
|
495
|
}
|
496
|
|
497
|
PreparedStatement pstmt;
|
498
|
// checking if user is owner of docid or if docid has public access
|
499
|
try {
|
500
|
pstmt = conn.prepareStatement(
|
501
|
"SELECT 'x' FROM xml_documents " +
|
502
|
"WHERE docid LIKE ? AND user_owner LIKE ? " +
|
503
|
"UNION " +
|
504
|
"SELECT 'x' FROM xml_documents " +
|
505
|
"WHERE docid LIKE ? AND public_access = 1");
|
506
|
// Bind the values to the query
|
507
|
pstmt.setString(1, docid);
|
508
|
pstmt.setString(2, user);
|
509
|
pstmt.setString(3, docid);
|
510
|
|
511
|
pstmt.execute();
|
512
|
ResultSet rs = pstmt.getResultSet();
|
513
|
boolean hasRow = rs.next();
|
514
|
pstmt.close();
|
515
|
if (hasRow) {
|
516
|
return true;
|
517
|
}
|
518
|
|
519
|
} catch (SQLException e) {
|
520
|
throw new
|
521
|
SQLException("Error checking document's owner or public access: "
|
522
|
+ e.getMessage());
|
523
|
}
|
524
|
|
525
|
// checking if docid has public access at this time
|
526
|
try {
|
527
|
pstmt = conn.prepareStatement(
|
528
|
"SELECT 'x' FROM xml_access " +
|
529
|
"WHERE docid LIKE ? " +
|
530
|
"AND principal_name = 'public' " +
|
531
|
"AND principal_type = 'user' " +
|
532
|
"AND sysdate BETWEEN nvl(begin_time,sysdate) " +
|
533
|
"AND nvl(end_time,sysdate)");
|
534
|
// Bind the values to the query
|
535
|
pstmt.setString(1, docid);
|
536
|
|
537
|
pstmt.execute();
|
538
|
ResultSet rs = pstmt.getResultSet();
|
539
|
boolean hasRow = rs.next();
|
540
|
pstmt.close();
|
541
|
if (hasRow) {
|
542
|
return true;
|
543
|
}
|
544
|
|
545
|
} catch (SQLException e) {
|
546
|
throw new
|
547
|
SQLException("Error checking doc's public access: " + e.getMessage());
|
548
|
}
|
549
|
|
550
|
// checking access type from xml_access table
|
551
|
int accesstype = 0;
|
552
|
try {
|
553
|
pstmt = conn.prepareStatement(
|
554
|
"SELECT access_type FROM xml_access " +
|
555
|
"WHERE docid LIKE ? " +
|
556
|
"AND principal_name LIKE ? " +
|
557
|
"AND principal_type = 'user' " +
|
558
|
"AND sysdate BETWEEN nvl(begin_time,sysdate) " +
|
559
|
"AND nvl(end_time,sysdate) " +
|
560
|
"UNION " +
|
561
|
"SELECT access_type FROM xml_access " +
|
562
|
"WHERE docid LIKE ? " +
|
563
|
"AND principal_name LIKE ? " +
|
564
|
"AND principal_type = 'group' " +
|
565
|
"AND sysdate BETWEEN nvl(begin_time,sysdate) " +
|
566
|
"AND nvl(end_time,sysdate)");
|
567
|
// Bind the values to the query
|
568
|
pstmt.setString(1, docid);
|
569
|
pstmt.setString(2, user);
|
570
|
pstmt.setString(3, docid);
|
571
|
pstmt.setString(2, group);
|
572
|
|
573
|
pstmt.execute();
|
574
|
ResultSet rs = pstmt.getResultSet();
|
575
|
boolean hasRows = rs.next();
|
576
|
while ( hasRows ) {
|
577
|
accesstype = rs.getInt(1);
|
578
|
if ( (accesstype & READ) == READ ) {
|
579
|
pstmt.close();
|
580
|
return true;
|
581
|
}
|
582
|
hasRows = rs.next();
|
583
|
}
|
584
|
|
585
|
pstmt.close();
|
586
|
return false;
|
587
|
|
588
|
} catch (SQLException e) {
|
589
|
throw new
|
590
|
SQLException("Error getting document's permissions: " + e.getMessage());
|
591
|
}
|
592
|
}
|
593
|
|
594
|
}
|
595
|
|
596
|
/**
|
597
|
* '$Log$
|
598
|
* 'Revision 1.18 2000/09/05 20:50:56 berkley
|
599
|
* 'Added a method called getNodeContent which retrieves the content of a node in a document. If there are more than one nodes with the same name returned, it returns an array with all of the data.
|
600
|
* '
|
601
|
* 'Revision 1.17 2000/08/31 21:20:39 berkley
|
602
|
* 'changed xslf for new returnfield scheme. the returnfields are now returned as <param name="<returnfield>"> tags.
|
603
|
* 'hThe sql for the returnfield query was redone to fix a previous problem with slow queries
|
604
|
* '
|
605
|
* 'Revision 1.16 2000/08/23 22:55:25 berkley
|
606
|
* 'changed the field names to be case-sensitive in the returnfields
|
607
|
* '
|
608
|
* 'Revision 1.15 2000/08/23 17:22:07 berkley
|
609
|
* 'added support for the returnfield parameter
|
610
|
* '-added the dynamic parameters to the returned hash table of documents
|
611
|
* '
|
612
|
* 'Revision 1.14 2000/08/17 16:02:34 berkley
|
613
|
* 'Made changes to createSQuery to allow for multiple parameters of the same name. Also changed the param list to include only "Hashtable params" without a "String doctype" since the doctype is already contained in the params.
|
614
|
* '
|
615
|
* 'Revision 1.13 2000/08/14 21:26:12 berkley
|
616
|
* 'Added createSQuery() to handle structured queries of an arbitrary number of parameters. Also modified createQuery() to handle a null query in a graceful manner.
|
617
|
* '
|
618
|
* 'Revision 1.12 2000/08/14 20:53:33 jones
|
619
|
* 'Added "release" keyword to all metacat source files so that the release
|
620
|
* 'number will be evident in software distributions.
|
621
|
* '
|
622
|
* 'Revision 1.11 2000/08/11 18:26:07 berkley
|
623
|
* 'added createSQuery
|
624
|
* '
|
625
|
* 'Revision 1.10 2000/07/26 20:40:41 higgins
|
626
|
* 'no message
|
627
|
* '
|
628
|
* 'Revision 1.9 2000/06/26 10:35:04 jones
|
629
|
* 'Merged in substantial changes to DBWriter and associated classes and to
|
630
|
* 'the MetaCatServlet in order to accomodate the new UPDATE and DELETE
|
631
|
* 'functions. The command line tools and the parameters for the
|
632
|
* 'servlet have changed substantially.
|
633
|
* '
|
634
|
* 'Revision 1.8.2.2 2000/06/25 23:38:16 jones
|
635
|
* 'Added RCSfile keyword
|
636
|
* '
|
637
|
* 'Revision 1.8.2.1 2000/06/25 23:34:17 jones
|
638
|
* 'Changed documentation formatting, added log entries at bottom of source files
|
639
|
* ''
|
640
|
*/
|