|
1
|
<!--
|
|
2
|
* '$RCSfile$'
|
|
3
|
* Purpose: web page describing the installation of Metacat
|
|
4
|
* Copyright: 2008 Regents of the University of California and the
|
|
5
|
* National Center for Ecological Analysis and Synthesis
|
|
6
|
* Authors: Chad Berkley
|
|
7
|
*
|
|
8
|
* '$Author: daigle $'
|
|
9
|
* '$Date: 2008-11-19 16:48:24 -0800 (Wed, 19 Nov 2008) $'
|
|
10
|
* '$Revision: 4597 $'
|
|
11
|
*
|
|
12
|
*
|
|
13
|
-->
|
|
14
|
|
|
15
|
<!DOCTYPE html PUBLIC "-//W3C//DTD html 4.0//EN">
|
|
16
|
<html>
|
|
17
|
|
|
18
|
<head>
|
|
19
|
<title>Metacat Configuration Instructions</title>
|
|
20
|
<link rel="stylesheet" type="text/css" href="./common.css">
|
|
21
|
<link rel="stylesheet" type="text/css" href="./default.css">
|
|
22
|
</head>
|
|
23
|
|
|
24
|
<body>
|
|
25
|
|
|
26
|
<table class="tabledefault" width="100%">
|
|
27
|
<tr><td rowspan="2"><img src="./images/KNBLogo.gif"></td>
|
|
28
|
<td colspan="7">
|
|
29
|
<div class="title">Metacat Configuration</div>
|
|
30
|
</td>
|
|
31
|
</tr>
|
|
32
|
<tr>
|
|
33
|
<td><a href="/" class="toollink"> KNB Home </a></td>
|
|
34
|
<td><a href="/data.html" class="toollink"> Data </a></td>
|
|
35
|
<td><a href="/people.html" class="toollink"> People </a></td>
|
|
36
|
<td><a href="/informatics" class="toollink"> Informatics </a></td>
|
|
37
|
<td><a href="/biodiversity" class="toollink"> Biocomplexity </a></td>
|
|
38
|
<td><a href="/education" class="toollink"> Education </a></td>
|
|
39
|
<td><a href="/software" class="toollink"> Software </a></td>
|
|
40
|
</tr>
|
|
41
|
</table>
|
|
42
|
<hr>
|
|
43
|
|
|
44
|
<div class="header1">Table of Contents</div>
|
|
45
|
<div class="toc">
|
|
46
|
<div class="toc1"><a href="#InstallationIssues">Installation Issues</a></div>
|
|
47
|
<div class="toc2"><a href="#Issue1">Issue 1</a></div>
|
|
48
|
<div class="toc2"><a href="#Issue2">Issue 2</a></div>
|
|
49
|
<div class="toc1"><a href="#StartupIssues">Startup Issues</a></div>
|
|
50
|
<div class="toc2"><a href="#Jdk14Logger">Metacat doesn't start and Jdk14Logger exception</a></div>
|
|
51
|
<div class="toc1"><a href="#ConfigurationIssues">Configuration Issues</a></div>
|
|
52
|
<div class="toc1"><a href="#GeneralApplicationIssues">General Application Issues</a></div>
|
|
53
|
<div class="toc1"><a href="#UnitTestingIssues">Unit Testing Issues</a></div>
|
|
54
|
</div>
|
|
55
|
|
|
56
|
<a name="InstallationIssues"></a><div class="header1">Installation Issues</div>
|
|
57
|
<a name="Issue1"></a><div class="header2">Issue 1</div>
|
|
58
|
<p>Issue 1 here</p>
|
|
59
|
<a name="Issue2"></a><div class="header2">Issue 2</div>
|
|
60
|
<p>Issue 2 here</p>
|
|
61
|
|
|
62
|
<a name="StartupIssues"></a><div class="header1">Startup Issues</div>
|
|
63
|
<a name="Jdk14Logger"></a><div class="header2">Metacat doesn't start and Jdk14Logger exception</div>
|
|
64
|
<p>The symptoms are that the metacat service will not show up at all, even though Tomcat
|
|
65
|
is serving, and the following error shows up in the tomcat log (catalina.log):</p>
|
|
66
|
|
|
67
|
<div class="code">org.apache.commons.logging.LogConfigurationException: User-specified log
|
|
68
|
class 'org.apache.commons.logging.impl.Jdk14Logger' cannot be found or is
|
|
69
|
not useable </div>
|
|
70
|
|
|
71
|
<p>This message typically occurs in the tomcat log (catalina.log)
|
|
72
|
when Tomcat has been installed on an Ubuntu/Debian system using apt-get install.
|
|
73
|
And the application is started using:
|
|
74
|
|
|
75
|
<div class="code">/etc/init.d/tomcat5.5 start</div>
|
|
76
|
|
|
77
|
<p>The problem is that the standard startup scripts reference the
|
|
78
|
common java service, jsvc. Metacat will not run under jsvc. The solutions are:
|
|
79
|
<ul>
|
|
80
|
<li>Download the <a href="http://knb.ecoinformatics.org/software/download.html">Metacat binary install package</a>
|
|
81
|
and replace your /etc/init.d/tomcat5.5 startup script with the one provided in the
|
|
82
|
package.</li>
|
|
83
|
<li>Run Tomcat from the Tomcat binary directory: <tomcat_home>/bin/startup.sh and
|
|
84
|
<tomcat_home>/bin/shutdown.sh</li>
|
|
85
|
</ul>
|
|
86
|
</p>
|
|
87
|
<a name="ConfigurationIssues"></a><div class="header1">Configuration Issues</div>
|
|
88
|
|
|
89
|
<a name="GeneralApplicationIssues"></a><div class="header1">General Application Issues</div>
|
|
90
|
|
|
91
|
<a name="UnitTestingIssues"></a><div class="header1">Unit Testing Issues</div>
|
|
92
|
|
