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Revision 4646

Added by daigle about 16 years ago

Add metacat source build instructions and apache configuration instructions.

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docs/user/metacat-install.html
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  <p>
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    Install Tomcat into the directory of your choice. The directory in which
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    you install Tomcat itself will be referred to as the &lt;tomcat_home&gt;.
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    We recommend that you install Tomcat version 5.5.  More details about
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    Tomcat installation are available <a href=" http://jakarta.apache.org/tomcat/index.html">here</a>.
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    We recommend that you install Tomcat version 5.5.  If you are running
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    Ubuntu/Debian, you can get Tomcat by typing:</p>
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      <div class="code">sudo apt-get install tomcat5.5</div>
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    Otherwise, you can get Tomcat from <a href=" http://jakarta.apache.org/tomcat/index.html">the Apache Tomcat page</a>.
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  </p>
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<a name="DownloadingMetacat"></a><div class="header1">Download Metacat and Get War File</div>


  		




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  <a name="InstallMetacatWar"></a><div class="header2">Install Metacat War</div> 


  		




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    <p>Copy the war file to Tomcat:</p>


  		




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	  <div class="code">sudo cp knb.war &lt;tomcat_app_dir&gt;</div>


  		




  
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  <a name="ApacheConfig"></a><div class="header2">Configure Apache</div> 


  		




  
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    <p>You have the option of running Tomcat stand-alone or with with the Apache web


  		




  
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    server.  Running with Apache is the more traditional setup since Apache is a 


  		




  
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    more robust web server.  There are some initial setup steps to get Apache talking


  		




  
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    to the Metacat application at the </p>


  		




  
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	  <a href="./metacat-apache-config.html"> the Metacat Apache Configuration page</a></p>


  		




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<a name="UpgradingMetacat"></a><div class="header1">Upgrading Existing Metacat</div>


  		




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  <a name="protocol"></a>


  		












  

    
      docs/user/metacat-apache-config.html
    
  





  
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<!-- 


  		




  
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  *   '$RCSfile$'


  		




  
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  *     Purpose: web page describing the installation of Metacat


  		




  
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  *   Copyright: 2008 Regents of the University of California and the


  		




  
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  *               National Center for Ecological Analysis and Synthesis


  		




  
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  *     Authors: Chad Berkley


  		




  
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  *


  		




  
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  *    '$Author: daigle $'


  		




  
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  *    '$Date: 2008-11-24 11:57:40 -0800 (Mon, 24 Nov 2008) $'


  		




  
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  *    '$Revision: 4621 $'


  		




  
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  *


  		




  
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  *


  		




  
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  -->


  		




  
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<!DOCTYPE html PUBLIC "-//W3C//DTD html 4.0//EN">


  		




  
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<html>


  		




  
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<head>


  		




  
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  <title>Metacat Apache Configuration</title>


  		




  
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  <link rel="stylesheet" type="text/css" href="./common.css">


  		




  
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  <link rel="stylesheet" type="text/css" href="./default.css">


  		




  
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</head>


  		




  
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<body>


  		




  
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<table class="tabledefault" width="100%">


  		




  
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<tr><td rowspan="2"><img src="./images/KNBLogo.gif"></td>


  		




  
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<td colspan="7">


  		




  
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<div class="title">Metacat Apache Configuration</div>


  		




  
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</td>


  		




  
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</tr>


  		




  
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<tr>


  		




  
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  <td><a href="/" class="toollink"> KNB Home </a></td>


  		




  
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  <td><a href="/data.html" class="toollink"> Data </a></td>


  		




  
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  <td><a href="/people.html" class="toollink"> People </a></td>


  		




  
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  <td><a href="/informatics" class="toollink"> Informatics </a></td>


  		




  
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  <td><a href="/biodiversity" class="toollink"> Biocomplexity </a></td>


  		




  
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  <td><a href="/education" class="toollink"> Education </a></td>


  		




  
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  <td><a href="/software" class="toollink"> Software </a></td>


  		




  
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</tr>


  		




  
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</table>


  		




  
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<hr>


  		




  
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<div class="header1">Table of Contents</div>


  		




  
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  <div class="toc">


  		




  
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    <div class="toc1"><a href="#Intro">Introduction</a></div>


  		




  
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    <div class="toc1"><a href="#UbuntuConfig">Unbuntu/Debian Configuration</a></div>


  		




  
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      <div class="toc2"><a href="#ModJK">Set Up Mod JK</a></div>


  		




  
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      <div class="toc2"><a href="#SetUpKnb">Set Up Metacat Site</a></div>


  		




  
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      <div class="toc2"><a href="#LsidConfig">LSID Service Configuration</a></div>


  		




  
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      <div class="toc2"><a href="#UbuntuReloadApache">Reload Apache</a></div>


  		




  
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    <div class="toc1"><a href="#OtherConfig">Other O/S Configuration</a></div>


  		




  
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  </div> 


  		




  
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<a name="Intro"></a><div class="header1">Introduction</div>


  		




  
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  <p>If you are going to run Tomcat behind the Apache web server, you have some additional


  		




  
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  setup to perform.  One of the reasons for recommending the Ubuntu Linux O/S is its 


  		




  
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  ease of setup.  This becomes abundantly clear when configuring Apache.  We will


  		




  
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  address Ubuntu/Debian configurations separately from all other configurations.</p>


  		




  
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<a name="UbuntuConfig"></a><div class="header1">Unbuntu/Debian Configuration</div>  


  		




  
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   <p>If you are installing on an Ubuntu/Debian system, and you installed Apache using 


  		




  
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   apt-get, the Metacat code will have helper files that can be dropped into directories 


  		




  
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   to configure Apache.  Depending on whether you are installing from binary distribution 


  		




  
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   or source, these helper files will be in one of two locations:


  		




  
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   <ul>


  		




  
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   <li>Installing From Binary Distribution - the helper files will be located in the 


  		




  
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   directory where you extracted the distribution.</li>


  		




  
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   <li>Installing From Source - regardless if it's a source distribution or source that 


  		




  
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   you checked out from the SVN repository, the helper files will be located in:


  		




  
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     <div class="code">&lt;metacat_code_dir&gt;/src/scripts</div></li>


  		




  
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   </ul>


  		




  
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   <p>We will refer to the directory with the helper scripts as &lt;metacat_helper_dir&gt;</p>


  		




  
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   <p>We will refer to the directory where Apache is installed as &lt;apache_install_dir&gt;</p>


  		




  
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   <a name="ModJK"></a><div class="header2">Set Up Mod JK</div>


  		




  
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	<p>Apache uses a module called Mod JK to talk to Tomcat applications.  If you haven't done so 


  		




  
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	already, you can install it by typing:</p>	


  		




  
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	  <div class="code">sudo apt-get install libapache2-mod-jk</div>


  		




  
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	<p>The helper files that configure the interface between Apache and Tomcat are jk.conf and workers.properties.


  		




  
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	To install these files:</p>


  		




  
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      <div class="code">sudo cp &lt;metacat_helper_dir&gt;/jk.conf &lt;apache_install_dir&gt;/mods-available/</div>


  		




  
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      <div class="code">sudo cp &lt;metacat_helper_dir&gt;/workers.properties &lt;apache_install_dir&gt;</div>


  		




  
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    <p>Disabling and re-enabling the Apache Mod JK module will pick up the new changes:</p>


  		




  
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      <div class="code">sudo a2dismod jk</div>


  		




  
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      <div class="code">sudo a2enmod jk</div>


  		




  
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   <a name="SetUpKnb"></a><div class="header2">Set Up Metacat Site</div>   


  		




  
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    <p>Next, Apache needs to know about the Metacat site.  The helper file named "knb" has rules that


  		




  
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    tell Apache which traffic to route to Metacat.  Set up the knb (Metacat) site by dropping the 


  		




  
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    knb file into the sites-available directory and running the a2ensite to enable the site:</p>


  		




  
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      <div class="code">sudo cp &lt;metacat_helper_dir&gt;/knb &lt;apache_install_dir&gt;/sites-available</div>


  		




  
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      <div class="code">sudo a2ensite knb</div>


  		




  
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    <a name="LsidConfig"></a><div class="header2">LSID Service Configuration</div>   


  		




  
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    <p>If you want to run an optional LSID server along with the Metacat server, set up and enable the authority service site 


  		




  
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      configurations by typing:</p>


  		




  
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      <div class="code">sudo cp &lt;metacat_helper_dir&gt;/authority &lt;apache_install_dir&gt;/sites-available</div>


  		




  
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      <div class="code">sudo a2ensite authority</div>


  		




  
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    <a name="UbuntuReloadApache"></a><div class="header2">Reload Apache</div>


  		




  
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    <p>Reload apache to bring in changes by typing:</p>


  		




  
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      <div class="code">sudo /etc/init.d/apache2 force-reload</div>


  		




  
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<a name="OtherConfig"></a><div class="header1">Other O/S Configuration</div>


  		




  
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  <p>If you are running on an O/S other than Ubuntu/Debian or you installed the


  		




  
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  Apache source or binary, you will need to manually edit the Apache configuration


  		




  
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  file.</p> 


  		




  
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  <p>We will refer to the directory where Apache is installed as &lt;apache_install_dir&gt;</p>


  		




  
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  <p>Edit:</p>


  		




  
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    <div class="code">&lt;apache_install_dir&gt;/conf/httpd.conf</div>


  		




  
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  <a name="ModJkLog"></a><div class="header2">Mod JK Log Configuration</div>


  		




  
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    <p> You should configure the log location and level for Mod JK.  If you do not


  		




  
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    already have a section like this, you should add it.</p>  


  		




  
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    <div class="code">


  		




  
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    &lt;IfModule mod_jk.c&gt;<br>


  		




  
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       &nbsp;&nbsp;JkLogFile "/var/log/tomcat/mod_jk.log"<br>


  		




  
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       &nbsp;&nbsp;JkLogLevel info<br>


  		




  
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    &lt;/IfModule&gt;


  		




  
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    </div>


  		




  
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    <p>You can set the log location to any place you like</p>


  		




  
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  <a name="VirtualHost"></a><div class="header2">Virtual Host Configuration</div>  


  		




  
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  <p>The following section configures apache to talk to route traffic to the Metacat


  		




  
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  application.</p>


  		




  
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    <div class="code">


  		




  
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    &lt;VirtualHost XXX.XXX.XXX.XXX:80&gt;<br>


  		




  
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      &nbsp;&nbsp;DocumentRoot /var/www<br>


  		




  
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      &nbsp;&nbsp;ServerName dev.nceas.ucsb.edu<br>


  		




  
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      &nbsp;&nbsp;ErrorLog /var/log/httpd/error_log<br>


  		




  
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      &nbsp;&nbsp;CustomLog /var/log/httpd/access_log common<br>


  		




  
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    <br>


  		




  
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      &nbsp;&nbsp;ScriptAlias /cgi-bin/ "/var/www/cgi-knb/"<br>


  		




  
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      &nbsp;&nbsp;&lt;Directory /var/www/cgi-knb/&gt;<br>


  		




  
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        &nbsp;&nbsp;&nbsp;&nbsp;AllowOverride None<br>


  		




  
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        &nbsp;&nbsp;&nbsp;&nbsp;Options ExecCGI<br>


  		




  
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        &nbsp;&nbsp;&nbsp;&nbsp;Order allow,deny<br>


  		




  
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        &nbsp;&nbsp;&nbsp;&nbsp;Allow from all<br>


  		




  
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      &nbsp;&nbsp;&lt;/Directory&gt;<br>


  		




  
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    <br>


  		




  
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      &nbsp;&nbsp;ScriptAlias /knb/cgi-bin/ "/var/www/webapps/knb/cgi-bin/"<br>


  		




  
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      &nbsp;&nbsp;&lt;Directory "/var/www/webapps/knb/cgi-bin/"&gt;<br>


  		




  
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        &nbsp;&nbsp;&nbsp;&nbsp;AllowOverride None<br>


  		




  
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        &nbsp;&nbsp;&nbsp;&nbsp;Options ExecCGI<br>


  		




  
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        &nbsp;&nbsp;&nbsp;&nbsp;Order allow,deny<br>


  		




  
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        &nbsp;&nbsp;&nbsp;&nbsp;Allow from all<br>


  		




  
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      &nbsp;&nbsp;&lt;/Directory&gt;<br>


  		




  
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    <br>


  		




  
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      &nbsp;&nbsp;JkMount /knb ajp13<br>


  		




  
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      &nbsp;&nbsp;JkMount /knb/* ajp13<br>


  		




  
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      &nbsp;&nbsp;JkMount /knb/metacat ajp13<br>


  		




  
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      &nbsp;&nbsp;JkUnMount /knb/cgi-bin/* ajp13<br>


  		




  
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      &nbsp;&nbsp;JkMount /*.jsp ajp13<br>


  		




  
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      &nbsp;&nbsp;JkMount /metacat ajp13<br>


  		




  
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      &nbsp;&nbsp;JkMount /metacat/* ajp13<br>


  		




  
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    &lt;/VirtualHost&gt;<br>


  		




  
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    </div>


  		




  
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    <p>Some notes:</p>


  		




  
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    <ul>


  		




  
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    <li>ServerName - should be set to the dns name where you will serve Metacat.</li>


  		




  
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    <li> ScriptAlias /knb/cgi-bin/ - this directive and the following Directory section


  		




  
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    should both point to the cgi-bin directory inside your Metacat installation.</li>


  		




  
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    </ul>


  		




  
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  <a name="WorkersProperties"></a><div class="header2">workers.properties file</div> 


  		




  
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   <p>You will need to drop a file named "workers.proerpties" file into your Apache 


  		




  
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   configuration directory, and edit the file to make sure all properties are correct.


  		




  
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   Metacat provides a base workers.properties file for you to use.  Depending on 


  		




  
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   whether you are installing from binary distribution or source, the workers.properties


  		




  
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   files will be in one of two locations:


  		




  
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   <ul>


  		




  
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   <li>Installing From Binary Distribution - the file will be located in the 


  		




  
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   directory where you extracted the distribution.</li>


  		




  
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   <li>Installing From Source - regardless if it's a source distribution or source that 


  		




  
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   you checked out from the SVN repository, the file will be located in:


  		




  
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     <div class="code">&lt;metacat_code_dir&gt;/src/scripts/workers.properties</div></li>


  		




  
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   </ul>   


  		




  
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   <p>Copy the workers.properties file into:</p>


  		




  
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     &lt;apache_install_dir&gt;/conf/


  		




  
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   <p>Edit the workers.properties file and make sure the following properties are


  		




  
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   set correctly:</p>


  		




  
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   <ul>


  		




  
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   <li>workers.tomcat_home - should be set to the Tomcat install directory on your system.</li>


  		




  
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   <li>workers.java_home  - should be set to the Java install directory on your system.</li>


  		




  
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   </ul> 


  		




  
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  <a name="LsidConfig"></a><div class="header2">LSID Service Configuration</div>   


  		




  
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    <p>If you want to run an optional LSID server along with the Metacat server, add the following lines to the


  		




  
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    VirtualHost section you configured above:</p>


  		




  
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      <div class="code">


  		




  
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        &nbsp;&nbsp;JkMount /authority ajp13<br>


  		




  
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        &nbsp;&nbsp;JkMount /authority/* ajp13<br>


  		




  
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      </div>


  		




  
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    <a name="UbuntuReloadApache"></a><div class="header2">Reload Apache</div>


  		




  
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    <p>Restart apache to bring in changes by typing:</p>


  		




  
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      <div class="code">sudo /etc/init.d/apache2 restart</div>


  		




  
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    <br>    


  		




  
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</body>


  		




  
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</html>


  		




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      docs/user/metacat-source-build.html
    
  





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  may want to develop and submit code to the Metacat repository</li>


  		




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  </ul>


  		




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  <p>In order to check out Metacat, you will need both Subversion (SVN) and CVS clients


  		




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  installed and configured on your system.  This is because, while Metacat has been 


  		




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  migrated to SVN, some of its supporting libraries (eml, utlities and seek) have not 


  		




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  yet been migrated.  Eventually, SVN will be the only versioning client you will need.  


  		




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  You will need to make sure you have the appropriate permissions on these systems</p>


  		




  
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  <p>You will also need Apache Ant to do the build.  If you have not already 


  		




  
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  installed Ant and you are running Ubuntu/Debian, you can get it by typing:</p>


  		




  
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    <div class="code">sudo apt-get install ant</div>


  		




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  <p>For more information on installing SVN and CVS, please visit the following sites:


  		




  
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  <p>Otherwise, you can get ant from


  		




  
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  <a href="http://ant.apache.org/">The Apache Ant homepage</a></p>


  		




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  <ul>


  		




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  <li><a href="http://subversion.tigris.org">The Subversion homepage</a></li>


  		




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  <li><a href="http://ximbiot.com/cvs/wiki/">The Ximbiot CVS homepage</a></li>


  		




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  </ul>


  		




  
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  <p>If you are checking out Metacat code from the SVN repository, you will need both 


  		




  
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  Subversion (SVN) and CVS clients installed and configured on your system.  Both are needed


  		




  
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  because, while Metacat has been migrated to SVN, some of its supporting libraries (eml, 


  		




  
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  utilities and seek) have not yet been migrated.  Eventually, SVN will be the only versioning 


  		




  
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  client you will need.  You will need to make sure you have the appropriate accounts on these 


  		




  
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  systems.  You won't have to worry about SVN or CVS if you are installing from a Metacat


  		




  
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  source distribution.  These have all the required dependencies built in.</p>


  		




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  </p>You will also need Apache Ant to do the build.  If you have not already 


  		




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  installed Ant, you can get it at:


  		




  
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  <p>If you have not already installed Subversion and you are running Ubuntu/Debian, you can 


  		




  
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  get it by typing:</p>


  		




  
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    <div class="code">sudo apt-get install subversion</div>


  		




  
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  91
  
    
  <p>Otherwise, you can get if from <a href="http://subversion.tigris.org">The Subversion homepage</a></p>


  		




  87
  92
  
    
  


  		




  88
  
  
    
  <ul>


  		




  89
  
  
    
  <li><a href="http://ant.apache.org/">The Apache Ant homepage</a></li>


  		




  90
  
  
    
  </ul>


  		




  
  93
  
    
  <p>If you have not already installed CVS and you are running Ubuntu/Debian, you can 


  		




  
  94
  
    
  get it by typing:</p>


  		




  
  95
  
    
    <div class="code">sudo apt-get install cvs</div>


  		




  
  96
  
    
    


  		




  
  97
  
    
  <p>Otherwise, you can get it from <a href="http://ximbiot.com/cvs/wiki/">The Ximbiot CVS homepage</a></p>


  		




  
  98
  
    
 


  		




  91
  99
  
    

  		




  92
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<a name="GetSource"></a><div class="header1">Get Metacat Source</div>


  		




  93
  101
  
    

  		




  ......




  103
  111
  
    
    <p>Extract the Metacat package files on Linux systems by typing:


  		




  104
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      <div class="code">tar -xvzf metacat-src-X.X.X.tar.gz</div>


  		




  105
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    <p>or, on Windows, use your system unzip utility to extract the zip file.</p>


  		




  106
  
  
    
    <p>You should see the full Metacat source tree.</p>


  		




  
  114
  
    
    <p>Rename the metacat-X.X.X directory to metacat.</p>


  		




  107
  115
  
    
 


  		




  108
  116
  
    
  <a name="SVN"></a><div class="header2">SVN Checkout</div> 


  		




  109
  117
  
    
    <p>To check out the code from SVN, go to the directory where you would like the code 


  		




  110
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    to live and type:</p>


  		




  111
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      <div class="code">svn co https://code.ecoinformatics.org/code/metacat/tags/METACAT_&lt;rev&gt; metacat</div>


  		




  112
  
  
    
    Where &lt;rev&gt; is the version of the code you want to check out (like 1_9). </p>


  		




  
  120
  
    
    <p>Where &lt;rev&gt; is the version of the code you want to check out (like 1_9). </p>


  		




  113
  121
  
    
    


  		




  114
  122
  
    
    <p>If you are trying to check out the head, type:</p>


  		




  115
  123
  
    
      <div class="code">svn co https://code.ecoinformatics.org/code/metacat/trunk metacat</div>


  		




  ......




  136
  144
  
    
    


  		




  137
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  <a name="DoAntBuild"></a><div class="header2">Do Ant Build</div>   


  		




  138
  146
  
    
    <p>In the &lt;metacat_src_dir&gt;, run: </p>


  		




  139
  
  
    
      <div class="code">ant fullclean build-metacat</div>


  		




  
  147
  
    
      <div class="code">ant clean build-metacat</div>


  		




  140
  148
  
    
      


  		




  141
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    <p>You will see the individual modules get built.  You will be prompted


  		




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    for your cvs password several times.  You should see a "BUILD SUCCESSFUL"


  		












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