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/**
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* '$RCSfile$'
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* Copyright: 2004 Regents of the University of California and the
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* National Center for Ecological Analysis and Synthesis
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*
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* '$Author$'
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* '$Date$'
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* '$Revision$'
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*
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* This program is free software, you can redistribute it and/or modify
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* it under the terms of the GNU General Public License as published by
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* the Free Software Foundation, either version 2 of the License, or
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* (at your option) any later version.
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*
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* This program is distributed in the hope that it will be useful,
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* but WITHOUT ANY WARRANTY, without even the implied warranty of
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* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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* GNU General Public License for more details.
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*
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* You should have received a copy of the GNU General Public License
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* along with this program, if not, write to the Free Software
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* Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
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*/
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sgarg
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/*
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* this is sql script does the same as the sql script named
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* xmltables.sql except that this script is to be use to
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* create the database tables on a Postgresql backend rather
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* than an Oracle Backend
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*/
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/*
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* Replication -- table to store servers that metacat is replicated to
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*/
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CREATE SEQUENCE xml_replication_id_seq;
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CREATE TABLE xml_replication (
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serverid INT8 default nextval('xml_replication_id_seq'),
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server VARCHAR(512),
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last_checked DATE,
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replicate INT8,
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datareplicate INT8,
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hub INT8,
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CONSTRAINT xml_replication_pk PRIMARY KEY (serverid)
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);
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INSERT INTO xml_replication (server, replicate, datareplicate, hub) VALUES ('localhost', '0', '0', '0');
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sgarg
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/*
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* Nodes -- table to store XML Nodes (both elements and attributes)
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*/
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CREATE SEQUENCE xml_nodes_id_seq;
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CREATE TABLE xml_nodes (
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nodeid INT8 default nextval('xml_nodes_id_seq'),
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-- the unique node id (pk)
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nodeindex INT8, -- order of nodes within parent
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nodetype VARCHAR(20), -- type (DOCUMENT, COMMENT, PI,
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-- ELEMENT, ATTRIBUTE, TEXT)
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nodename VARCHAR(250), -- the name of an element or attribute
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nodeprefix VARCHAR(50), -- the namespace prefix of the node
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nodedata TEXT, -- the data for this node (e.g.,
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-- for TEXT it is the content)
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parentnodeid INT8, -- index of the parent of this node
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rootnodeid INT8, -- index of the root node of this tree
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docid VARCHAR(250), -- index to the document id
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date_created DATE,
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date_updated DATE,
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nodedatanumerical FLOAT8, -- the data for this node if
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-- if it is a number
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CONSTRAINT xml_nodes_pk PRIMARY KEY (nodeid),
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CONSTRAINT xml_nodes_root_fk
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FOREIGN KEY (rootnodeid) REFERENCES xml_nodes,
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CONSTRAINT xml_nodes_parent_fk
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FOREIGN KEY (parentnodeid) REFERENCES xml_nodes
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);
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/*
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* Indexes of rootnodeid, parentnodeid, and nodename in xml_nodes
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*/
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CREATE INDEX xml_nodes_idx1 ON xml_nodes (rootnodeid);
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CREATE INDEX xml_nodes_idx2 ON xml_nodes (parentnodeid);
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CREATE INDEX xml_nodes_idx3 ON xml_nodes (nodename);
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CREATE INDEX xml_nodes_idx4 ON xml_nodes (docid);
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/*
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* Table for storing the nodes for the old revisions of the document and the deleted documents
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*/
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CREATE TABLE xml_nodes_revisions (
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nodeid INT8, -- the unique node id (pk)
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nodeindex INT8, -- order of nodes within parent
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nodetype VARCHAR(20), -- type (DOCUMENT, COMMENT, PI,
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-- ELEMENT, ATTRIBUTE, TEXT)
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nodename VARCHAR(250), -- the name of an element or attribute
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nodeprefix VARCHAR(50), -- the namespace prefix of the node
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nodedata TEXT, -- the data for this node (e.g.,
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-- for TEXT it is the content)
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parentnodeid INT8, -- index of the parent of this node
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rootnodeid INT8, -- index of the root node of this tree
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docid VARCHAR(250), -- index to the document id
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date_created DATE,
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date_updated DATE,
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nodedatanumerical FLOAT8, -- the data for this node if
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-- if it is a number
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CONSTRAINT xml_nodes_revisions_pk PRIMARY KEY (nodeid),
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CONSTRAINT xml_nodes_revisions_root_fk
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FOREIGN KEY (rootnodeid) REFERENCES xml_nodes_revisions,
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CONSTRAINT xml_nodes_revisions_parent_fk
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FOREIGN KEY (parentnodeid) REFERENCES xml_nodes_revisions
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);
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/*
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* Indexes of rootnodeid, parentnodeid, and nodename in xml_nodes_revisions
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*/
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CREATE INDEX xml_nodes_revisions_idx1 ON xml_nodes_revisions (rootnodeid);
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CREATE INDEX xml_nodes_revisions_idx2 ON xml_nodes_revisions (parentnodeid);
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CREATE INDEX xml_nodes_revisions_idx3 ON xml_nodes_revisions (nodename);
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/*
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* XML Catalog -- table to store all external sources for XML documents
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*/
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CREATE SEQUENCE xml_catalog_id_seq;
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CREATE TABLE xml_catalog (
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catalog_id INT8 default nextval('xml_catalog_id_seq'),
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-- the id for this catalog entry
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entry_type VARCHAR(500), -- the type of this catalog entry
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-- (e.g., DTD, XSD, XSL)
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source_doctype VARCHAR(500), -- the source public_id for transforms
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target_doctype VARCHAR(500), -- the target public_id for transforms
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public_id VARCHAR(500), -- the unique id for this type
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system_id VARCHAR(1000), -- the local location of the object
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CONSTRAINT xml_catalog_pk PRIMARY KEY (catalog_id),
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CONSTRAINT xml_catalog_uk UNIQUE
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(entry_type, source_doctype, target_doctype, public_id)
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);
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/*
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* Sequence to get uniqueID for Accession #
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*/
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CREATE SEQUENCE xml_documents_id_seq;
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/*
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* Documents -- table to store XML documents
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*/
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CREATE TABLE xml_documents (
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docid VARCHAR(250), -- the document id #
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rootnodeid INT8, -- reference to root node of the DOM
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docname VARCHAR(100), -- usually the root element name
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doctype VARCHAR(100), -- public id indicating document type
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user_owner VARCHAR(100), -- the user owned the document
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user_updated VARCHAR(100), -- the user updated the document
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server_location INT8, -- the server on which this document resides
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rev INT8 default 1, -- the revision number of the document
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date_created DATE,
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date_updated DATE,
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public_access INT8, -- flag for public access
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catalog_id INT8, -- reference to xml_catalog
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CONSTRAINT xml_documents_pk PRIMARY KEY (docid),
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CONSTRAINT xml_documents_rep_fk
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FOREIGN KEY (server_location) REFERENCES xml_replication,
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CONSTRAINT xml_documents_root_fk
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FOREIGN KEY (rootnodeid) REFERENCES xml_nodes,
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CONSTRAINT xml_documents_catalog_fk
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FOREIGN KEY (catalog_id) REFERENCES xml_catalog
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);
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/*
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* Index of <docid,doctype> in xml_document
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*/
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CREATE INDEX xml_documents_idx1 ON xml_documents (docid, doctype);
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CREATE INDEX xml_documents_idx2 ON xml_documents (lower(user_owner));
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CREATE INDEX xml_documents_idx3 ON xml_documents (rootnodeid);
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/*
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* Revised Documents -- table to store XML documents saved after an UPDATE
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* or DELETE
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*/
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CREATE SEQUENCE xml_revisions_id_seq;
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CREATE TABLE xml_revisions (
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revisionid INT8 default nextval('xml_revisions_id_seq'),
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-- the revision number we are saving
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docid VARCHAR(250), -- the document id #
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rootnodeid INT8, -- reference to root node of the DOM
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docname VARCHAR(100), -- usually the root element name
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doctype VARCHAR(100), -- public id indicating document type
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user_owner VARCHAR(100),
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user_updated VARCHAR(100),
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server_location INT8,
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rev INT8,
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date_created DATE,
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date_updated DATE,
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public_access INT8, -- flag for public access
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catalog_id INT8, -- reference to xml_catalog
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CONSTRAINT xml_revisions_pk PRIMARY KEY (revisionid),
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CONSTRAINT xml_revisions_rep_fk
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FOREIGN KEY (server_location) REFERENCES xml_replication,
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CONSTRAINT xml_revisions_root_fk
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FOREIGN KEY (rootnodeid) REFERENCES xml_nodes_revisions,
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CONSTRAINT xml_revisions_catalog_fk
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FOREIGN KEY (catalog_id) REFERENCES xml_catalog
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);
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sgarg
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/*
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* ACL -- table to store ACL for XML documents by principals
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*/
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CREATE TABLE xml_access (
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docid VARCHAR(250), -- the document id #
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accessfileid VARCHAR(250), -- the document id # for the access file
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principal_name VARCHAR(100), -- name of user, group, etc.
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permission INT8, -- "read", "write", "all"
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perm_type VARCHAR(32), -- "allowed" or "denied"
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perm_order VARCHAR(32), -- "allow first" or "deny first"
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begin_time DATE, -- the time that permission begins
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end_time DATE, -- the time that permission ends
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ticket_count INT8, -- ticket counter for that permission
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subtreeid VARCHAR(32),
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startnodeid INT8,
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endnodeid INT8,
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CONSTRAINT xml_access_ck CHECK (begin_time < end_time),
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CONSTRAINT xml_access_accessfileid_fk
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FOREIGN KEY (accessfileid) REFERENCES xml_documents
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);
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CREATE INDEX xml_access_idx1 ON xml_access (lower(principal_name));
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CREATE INDEX xml_access_idx2 ON xml_access (permission);
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CREATE INDEX xml_access_idx3 ON xml_access (perm_type);
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CREATE INDEX xml_access_idx4 ON xml_access (perm_order);
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CREATE INDEX xml_access_idx5 ON xml_access (subtreeid);
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/*
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* Index of Nodes -- table to store precomputed paths through tree for
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* quick searching in structured searches
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*/
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CREATE TABLE xml_index (
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nodeid INT8, -- the unique node id
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path TEXT, -- precomputed path through tree
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docid VARCHAR(250), -- index to the document id
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doctype VARCHAR(100), -- public id indicating document type
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parentnodeid INT8, -- id of the parent of the node represented
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-- by this row
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CONSTRAINT xml_index_pk PRIMARY KEY (nodeid,path),
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CONSTRAINT xml_index_nodeid_fk FOREIGN KEY (nodeid) REFERENCES xml_nodes,
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CONSTRAINT xml_index_docid_fk
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FOREIGN KEY (docid) REFERENCES xml_documents
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);
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/*
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* Index of the paths in xml_index
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*/
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CREATE INDEX xml_index_idx1 ON xml_index (path);
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CREATE INDEX xml_index_idx2 ON xml_index (docid);
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CREATE INDEX xml_index_idx3 ON xml_index (nodeid);
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CREATE SEQUENCE xml_relation_id_seq;
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CREATE TABLE xml_relation (
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relationid INT8 default nextval('xml_relation_id_seq') PRIMARY KEY,
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-- unique id
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docid VARCHAR(250) , -- the docid of the package file
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-- that this relation came from
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packagetype VARCHAR(250), -- the type of the package
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subject VARCHAR(512) NOT NULL, -- the subject of the relation
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subdoctype VARCHAR(128), -- the doctype of the subject
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relationship VARCHAR(128) NOT NULL,-- the relationship type
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object VARCHAR(512) NOT NULL, -- the object of the relation
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objdoctype VARCHAR(128), -- the doctype of the object
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CONSTRAINT xml_relation_uk UNIQUE (docid, subject, relationship, object),
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sgarg
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CONSTRAINT xml_relation_docid_fk
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FOREIGN KEY (docid) REFERENCES xml_documents
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);
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2422
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sgarg
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/*
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* Table used to store all document identifiers in metacat. Each identifier
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* consists of 4 subparts, an authority, namespace, object, and revision as
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* defined in the LSID specification.
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*/
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CREATE SEQUENCE identifier_id_seq;
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CREATE TABLE identifier (
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id INT8 default nextval('identifier_id_seq') PRIMARY KEY, -- primary id
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authority VARCHAR(255), -- the authority issuing the identifier
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namespace VARCHAR(255), -- the namespace qualifying the identifier
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object VARCHAR(255), -- the local part of the identifier for a particular object
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revision VARCHAR(255) -- the revision part of the identifier
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);
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sgarg
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/*
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* accesssubtree -- table to store access subtree info
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*/
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CREATE TABLE xml_accesssubtree (
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docid VARCHAR(250), -- the document id #
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rev INT8 default 1, --the revision number of the docume
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controllevel VARCHAR(50), -- the level it control -- document or subtree
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2422
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sgarg
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subtreeid VARCHAR(250), -- the subtree id
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startnodeid INT8, -- the start node id of access subtree
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endnodeid INT8, -- the end node if of access subtree
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2422
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sgarg
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CONSTRAINT xml_accesssubtree_docid_fk
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FOREIGN KEY (docid) REFERENCES xml_documents
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);
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/*
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sgarg
|
* Returnfields -- table to store combinations of returnfields requested
|
300 |
|
|
* and the number of times this table is accessed
|
301 |
|
|
*/
|
302 |
2949
|
berkley
|
CREATE SEQUENCE xml_returnfield_id_seq;
|
303 |
2422
|
sgarg
|
CREATE TABLE xml_returnfield (
|
304 |
|
|
returnfield_id INT8 default nextval('xml_returnfield_id_seq'), -- the id for this returnfield entry
|
305 |
|
|
returnfield_string VARCHAR(2000), -- the returnfield string
|
306 |
|
|
usage_count INT8, -- the number of times this string has been requested
|
307 |
|
|
CONSTRAINT xml_returnfield_pk PRIMARY KEY (returnfield_id)
|
308 |
|
|
);
|
309 |
|
|
CREATE INDEX xml_returnfield_idx1 ON xml_returnfield(returnfield_string);
|
310 |
|
|
|
311 |
|
|
/*
|
312 |
|
|
* Queryresults -- table to store queryresults for a given docid
|
313 |
|
|
* and returnfield_id
|
314 |
|
|
*/
|
315 |
2949
|
berkley
|
CREATE SEQUENCE xml_queryresult_id_seq;
|
316 |
2422
|
sgarg
|
CREATE TABLE xml_queryresult(
|
317 |
|
|
queryresult_id INT8 default nextval('xml_queryresult_id_seq'), -- id for this entry
|
318 |
|
|
returnfield_id INT8, -- id for the returnfield corresponding to this entry
|
319 |
|
|
docid VARCHAR(250), -- docid of the document
|
320 |
3336
|
tao
|
queryresult_string TEXT, -- resultant text generated for this docid and given
|
321 |
2422
|
sgarg
|
-- returnfield
|
322 |
|
|
CONSTRAINT xml_queryresult_pk PRIMARY KEY (queryresult_id),
|
323 |
|
|
CONSTRAINT xml_queryresult_searchid_fk
|
324 |
|
|
FOREIGN KEY (returnfield_id) REFERENCES xml_returnfield
|
325 |
|
|
);
|
326 |
|
|
|
327 |
|
|
CREATE INDEX xml_queryresult_idx1 ON xml_queryresult (returnfield_id, docid);
|
328 |
|
|
|
329 |
|
|
/*
|
330 |
2276
|
jones
|
* Logging -- table to store metadata and data access log
|
331 |
|
|
*/
|
332 |
|
|
CREATE SEQUENCE access_log_id_seq;
|
333 |
|
|
CREATE TABLE access_log (
|
334 |
|
|
entryid INT8 default nextval ('access_log_id_seq'), -- the identifier for the log event
|
335 |
|
|
ip_address VARCHAR(512), -- the ip address inititiating the event
|
336 |
|
|
principal VARCHAR(512), -- the user initiiating the event
|
337 |
|
|
docid VARCHAR(250), -- the document id #
|
338 |
|
|
event VARCHAR(512), -- the code symbolizing the event type
|
339 |
|
|
date_logged TIMESTAMP, -- the datetime on which the event occurred
|
340 |
|
|
CONSTRAINT access_log_pk PRIMARY KEY (entryid)
|
341 |
|
|
);
|
342 |
|
|
|
343 |
2514
|
sgarg
|
|
344 |
2422
|
sgarg
|
/*
|
345 |
2514
|
sgarg
|
* Table for indexing the paths specified the administrator in metacat.properties
|
346 |
|
|
*/
|
347 |
|
|
|
348 |
|
|
CREATE SEQUENCE xml_path_index_id_seq;
|
349 |
|
|
CREATE TABLE xml_path_index (
|
350 |
|
|
nodeid INT8 default nextval('xml_path_index_id_seq'),
|
351 |
|
|
docid VARCHAR(250), -- the document id
|
352 |
|
|
path VARCHAR(1000), -- precomputed path through tree
|
353 |
3336
|
tao
|
nodedata TEXT, -- the data for this node (e.g.,
|
354 |
2514
|
sgarg
|
-- for TEXT it is the content)
|
355 |
|
|
nodedatanumerical FLOAT8, -- the data for this node if
|
356 |
|
|
-- if it is a number
|
357 |
|
|
parentnodeid INT8, -- id of the parent of the node represented
|
358 |
|
|
-- by this row
|
359 |
|
|
CONSTRAINT xml_path_index_pk PRIMARY KEY (nodeid),
|
360 |
2515
|
sgarg
|
CONSTRAINT xml_path_index_docid_fk
|
361 |
2514
|
sgarg
|
FOREIGN KEY (docid) REFERENCES xml_documents
|
362 |
|
|
);
|
363 |
|
|
|
364 |
|
|
/*
|
365 |
|
|
* Indexes of path, nodedata and nodedatanumerical in xml_path_index
|
366 |
|
|
*/
|
367 |
|
|
CREATE INDEX xml_path_index_idx1 ON xml_path_index (path);
|
368 |
|
|
CREATE INDEX xml_path_index_idx2 ON xml_path_index (nodedata);
|
369 |
|
|
CREATE INDEX xml_path_index_idx3 ON xml_path_index (nodedatanumerical);
|
370 |
3052
|
jones
|
CREATE INDEX xml_path_index_idx4 ON xml_path_index (upper(nodedata));
|
371 |
2514
|
sgarg
|
|
372 |
|
|
/*
|
373 |
2276
|
jones
|
* harvest_site_schedule -- table to store harvest sites and schedule info
|
374 |
|
|
*/
|
375 |
|
|
CREATE TABLE harvest_site_schedule (
|
376 |
|
|
site_schedule_id INT8, -- unique id
|
377 |
|
|
documentlisturl VARCHAR(255), -- URL of the site harvest document list
|
378 |
|
|
ldapdn VARCHAR(255), -- LDAP distinguished name for site account
|
379 |
|
|
datenextharvest DATE, -- scheduled date of next harvest
|
380 |
|
|
datelastharvest DATE, -- recorded date of last harvest
|
381 |
|
|
updatefrequency INT8, -- the harvest update frequency
|
382 |
|
|
unit VARCHAR(50), -- update unit -- days weeks or months
|
383 |
|
|
contact_email VARCHAR(50), -- email address of the site contact person
|
384 |
|
|
ldappwd VARCHAR(20), -- LDAP password for site account
|
385 |
|
|
CONSTRAINT harvest_site_schedule_pk PRIMARY KEY (site_schedule_id)
|
386 |
|
|
);
|
387 |
|
|
|
388 |
2422
|
sgarg
|
/*
|
389 |
2276
|
jones
|
* harvest_log -- table to log entries for harvest operations
|
390 |
|
|
*/
|
391 |
|
|
CREATE TABLE harvest_log (
|
392 |
|
|
harvest_log_id INT8, -- unique id
|
393 |
|
|
harvest_date DATE, -- date of the current harvest
|
394 |
|
|
status INT8, -- non-zero indicates an error status
|
395 |
|
|
message VARCHAR(1000), -- text message for this log entry
|
396 |
|
|
harvest_operation_code VARCHAR(30), -- the type of harvest operation
|
397 |
|
|
site_schedule_id INT8, -- site schedule id, or 0 if no site
|
398 |
|
|
CONSTRAINT harvest_log_pk PRIMARY KEY (harvest_log_id)
|
399 |
|
|
);
|
400 |
|
|
|
401 |
2422
|
sgarg
|
/*
|
402 |
2276
|
jones
|
* harvest_detail_log -- table to log detailed info about documents that
|
403 |
|
|
* generated errors during the harvest
|
404 |
|
|
*/
|
405 |
|
|
CREATE TABLE harvest_detail_log (
|
406 |
|
|
detail_log_id INT8, -- unique id
|
407 |
|
|
harvest_log_id INT8, -- ponter to the related log entry
|
408 |
|
|
scope VARCHAR(50), -- document scope
|
409 |
|
|
identifier INT8, -- document identifier
|
410 |
|
|
revision INT8, -- document revision
|
411 |
|
|
document_url VARCHAR(255), -- document URL
|
412 |
|
|
error_message VARCHAR(1000), -- text error message
|
413 |
|
|
document_type VARCHAR(100), -- document type
|
414 |
|
|
CONSTRAINT harvest_detail_log_pk PRIMARY KEY (detail_log_id),
|
415 |
2422
|
sgarg
|
CONSTRAINT harvest_detail_log_fk
|
416 |
2276
|
jones
|
FOREIGN KEY (harvest_log_id) REFERENCES harvest_log
|
417 |
|
|
);
|
418 |
|
|
|
419 |
4080
|
daigle
|
/*
|
420 |
|
|
* db_version -- table to store the version history of this database
|
421 |
|
|
*/
|
422 |
|
|
CREATE SEQUENCE db_version_id_seq;
|
423 |
|
|
CREATE TABLE db_version (
|
424 |
|
|
db_version_id INT8 default nextval ('db_version_id_seq'), -- the identifier for the version
|
425 |
|
|
version VARCHAR(250), -- the version number
|
426 |
|
|
status INT8, -- status of the version
|
427 |
|
|
date_created TIMESTAMP, -- the datetime on which the version was created
|
428 |
|
|
CONSTRAINT db_version_pk PRIMARY KEY (db_version_id)
|
429 |
|
|
);
|