Revision 4950
Added by daigle over 15 years ago
src/edu/ucsb/nceas/metacat/ArchiveHandler.java | ||
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/** |
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* '$RCSfile$' |
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* Purpose: A Class that implements session utility methods |
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* Copyright: 2008 Regents of the University of California and the |
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* National Center for Ecological Analysis and Synthesis |
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* Authors: Michael Daigle |
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* |
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* '$Author: daigle $' |
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* '$Date: 2009-03-25 13:41:15 -0800 (Wed, 25 Mar 2009) $' |
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* '$Revision: 4861 $' |
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* |
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* This program is free software; you can redistribute it and/or modify |
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* it under the terms of the GNU General Public License as published by |
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* the Free Software Foundation; either version 2 of the License, or |
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* (at your option) any later version. |
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* |
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* This program is distributed in the hope that it will be useful, |
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* but WITHOUT ANY WARRANTY; without even the implied warranty of |
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* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the |
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* GNU General Public License for more details. |
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* |
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* You should have received a copy of the GNU General Public License |
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* along with this program; if not, write to the Free Software |
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* Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA |
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*/ |
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package edu.ucsb.nceas.metacat; |
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import java.sql.SQLException; |
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import java.util.Hashtable; |
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import javax.servlet.http.HttpServletRequest; |
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import javax.servlet.http.HttpServletResponse; |
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import org.apache.log4j.Logger; |
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import edu.ucsb.nceas.metacat.service.PropertyService; |
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import edu.ucsb.nceas.metacat.util.ErrorSendingErrorException; |
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import edu.ucsb.nceas.metacat.util.ErrorUtil; |
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import edu.ucsb.nceas.metacat.util.MetacatUtilException; |
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import edu.ucsb.nceas.metacat.util.ResponseUtil; |
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import edu.ucsb.nceas.utilities.FileUtil; |
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import edu.ucsb.nceas.utilities.PropertyNotFoundException; |
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import edu.ucsb.nceas.utilities.UtilException; |
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public class ArchiveHandler { |
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private static ArchiveHandler archiveHandler = null; |
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private static Logger logMetacat = Logger.getLogger(ArchiveHandler.class); |
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/** |
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* private constructor since this is a singleton |
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*/ |
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private ArchiveHandler() throws HandlerException {} |
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/** |
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* Get the single instance of SessionService. |
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* |
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* @return the single instance of SessionService |
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*/ |
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public static ArchiveHandler getInstance() throws HandlerException { |
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if (archiveHandler == null) { |
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archiveHandler = new ArchiveHandler(); |
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} |
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return archiveHandler; |
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} |
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public void readArchiveEntry(Hashtable<String, String[]> params, HttpServletRequest request, |
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HttpServletResponse response, String user, |
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String passWord, String[] groups) throws HandlerException, ErrorSendingErrorException, ErrorHandledException { |
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String[] docs = new String[0]; |
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String docid = ""; |
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String qformat = ""; |
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String[] archiveEntryNames = new String[0]; |
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String archiveEntryName = ""; |
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try { |
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// read the docid from params |
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if (params.containsKey("docid")) { |
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docs = params.get("docid"); |
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docid = docs[0]; |
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} else { |
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throw new HandlerException("Could not find doc id in params when reading archive entry"); |
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} |
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// read the archive file entry name from params |
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if (params.containsKey("archiveEntryName")) { |
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archiveEntryNames = params.get("archiveEntryName"); |
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archiveEntryName = archiveEntryNames[0]; |
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} else { |
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throw new HandlerException("Could not find archiveEntryName in params when reading archive entry"); |
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} |
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// qformat is used to hold the type of archive and the format of the content that we wish to |
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// extract from the archive. The default is jar-file for streaming a file from a jar. If |
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// we wanted to do some special processing for specific archive or content types, we would use |
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// a different qformat (gzip-pdf for instance). |
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if (params.containsKey("qformat")) { |
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qformat = params.get("qformat")[0]; |
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} else { |
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qformat = "jar-file"; |
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} |
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//check the permission for read |
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try { |
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if (!DocumentImpl.hasReadPermission(user, groups, docid)) { |
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String errorString = "User " + user + " does not have permission" |
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+ " to read the document with the docid " + docid; |
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ErrorUtil.sendError(response, ErrorUtil.NO_READ_PERMISSION, errorString); |
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return; |
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} |
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} catch (McdbException mcdbe) { |
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throw new HandlerException("Error getting permissions for docid: " |
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+ docid + " for user: " + user + " : " + mcdbe.getMessage()); |
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} catch (SQLException sqle) { |
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throw new HandlerException("SQL error getting permissions for docid: " |
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+ docid + " for user: " + user + " : " + sqle.getMessage()); |
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} |
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// Get the path to the archive file |
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String archiveFileBasePath = PropertyService.getProperty("application.datafilepath"); |
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String archiveFilePath = archiveFileBasePath + FileUtil.getFS() + docid; |
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// Get the paths to the expanded archive directory and to the content file within |
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// that directory |
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String expandedArchiveBasePath = PropertyService.getProperty("application.expandedArchivePath"); |
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String expandedArchivePath = expandedArchiveBasePath + FileUtil.getFS() + docid; |
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String entryFilePath = expandedArchivePath + FileUtil.getFS() + archiveEntryName; |
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// If the expanded archive directory does not exist, create it. |
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if (!FileUtil.isDirectory(expandedArchivePath)) { |
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FileUtil.createDirectory(expandedArchivePath); |
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} |
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// If the entry we want does not exist, make sure it is actually in the archive |
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// file. If so, go ahead and expand the archive into the expanded archive directory. |
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if (FileUtil.getFileStatus(entryFilePath) == FileUtil.DOES_NOT_EXIST) { |
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if (FileUtil.getFileStatus(archiveFilePath) < FileUtil.EXISTS_READABLE) { |
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throw new HandlerException("Could not find archive: " + archiveFilePath |
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+ " in order to get content file: " + archiveEntryName); |
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} |
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// extract the jar file to the expanded archive directory |
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FileUtil.extractJarFile(archiveFilePath, expandedArchivePath); |
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} |
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ResponseUtil.writeFileToOutput(response, expandedArchivePath, archiveEntryName); |
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} catch (UtilException ue) { |
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String errorString = "Utility error reading archive entry for docid: " |
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+ docid + " : " + ue.getMessage(); |
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ErrorUtil.sendError(response, ErrorUtil.GENERAL_UTILITY_ERROR, errorString); |
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throw new ErrorHandledException(null); |
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} catch (PropertyNotFoundException pnfe) { |
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String errorString = "Property error reading archive entry for docid: " |
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+ docid + " : " + pnfe.getMessage(); |
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ErrorUtil.sendError(response, ErrorUtil.PROPERTY_NOT_FOUND, errorString); |
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throw new ErrorHandledException(null); |
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} catch (MetacatUtilException mue) { |
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String errorString = "Metacat utility error reading archive entry for docid: " |
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+ docid + " : " + mue.getMessage(); |
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ErrorUtil.sendError(response, ErrorUtil.METACAT_UTILITY_ERROR, errorString); |
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throw new ErrorHandledException(null); |
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} |
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} |
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} |
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src/edu/ucsb/nceas/metacat/MetaCatServlet.java | ||
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import java.util.HashMap; |
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import java.util.Hashtable; |
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import java.util.Iterator; |
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import java.util.List; |
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import java.util.Map; |
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import java.util.Timer; |
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import java.util.Vector; |
... | ... | |
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import edu.ucsb.nceas.metacat.cart.CartManager; |
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import edu.ucsb.nceas.metacat.dataquery.DataQuery; |
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import edu.ucsb.nceas.metacat.scheduler.SchedulerService; |
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import edu.ucsb.nceas.metacat.service.DatabaseService; |
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import edu.ucsb.nceas.metacat.service.PropertyService; |
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import edu.ucsb.nceas.metacat.service.ServiceException; |
... | ... | |
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import edu.ucsb.nceas.metacat.spatial.SpatialHarvester; |
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import edu.ucsb.nceas.metacat.spatial.SpatialQuery; |
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import edu.ucsb.nceas.metacat.util.AuthUtil; |
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import edu.ucsb.nceas.metacat.util.ErrorSendingErrorException; |
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import edu.ucsb.nceas.metacat.util.MetacatUtil; |
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import edu.ucsb.nceas.metacat.util.MetacatUtilException; |
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import edu.ucsb.nceas.metacat.util.RequestUtil; |
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import edu.ucsb.nceas.metacat.util.SystemUtil; |
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import edu.ucsb.nceas.metacat.util.SessionData; |
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import edu.ucsb.nceas.metacat.util.MetacatUtilException; |
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import edu.ucsb.nceas.utilities.FileUtil; |
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import edu.ucsb.nceas.utilities.GeneralPropertyException; |
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import edu.ucsb.nceas.utilities.PropertyNotFoundException; |
... | ... | |
233 | 234 |
logMetacat.debug("DBConnection pool initialized: " + connPool.toString()); |
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ServiceService.registerService("XMLSchemaService", XMLSchemaService.getInstance()); |
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ServiceService.registerService("SchedulerService", SchedulerService.getInstance()); |
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// check if eml201 document were corrected or not. if not, correct |
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// eml201 documents. |
... | ... | |
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handleExportAction(params, response, userName, groupNames, password); |
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} else if (action.equals("read")) { |
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handleReadAction(params, request, response, userName, password, |
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groupNames); |
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if (params.get("archiveEntryName") != null) { |
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ArchiveHandler.getInstance().readArchiveEntry(params, request, response, |
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userName, password,groupNames); |
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} else { |
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handleReadAction(params, request, response, userName, password, |
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groupNames); |
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} |
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} else if (action.equals("readinlinedata")) { |
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handleReadInlineDataAction(params, request, response, userName, |
722 | 729 |
password, groupNames); |
... | ... | |
858 | 865 |
// MetacatAdminServlet |
859 | 866 |
ServiceService.refreshService("XMLSchemaService"); |
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return; |
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}else { |
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} else if (action.equals("schedule")) { |
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SchedulerService.getInstance().scheduleHandler(params, request, response, |
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userName, groupNames); |
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return; |
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} else { |
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PrintWriter out = response.getWriter(); |
863 | 874 |
out.println("<?xml version=\"1.0\"?>"); |
864 | 875 |
out.println("<error>"); |
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887 | 898 |
String errorString = "Service error: " + ue.getMessage(); |
888 | 899 |
logMetacat.error(errorString); |
889 | 900 |
throw new ServletException(errorString); |
901 |
} catch (HandlerException he) { |
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String errorString = "Handler error: " + he.getMessage(); |
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logMetacat.error(errorString); |
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throw new ServletException(errorString); |
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} catch (ErrorSendingErrorException esee) { |
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String errorString = "Error sending error message: " + esee.getMessage(); |
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logMetacat.error(errorString); |
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throw new ServletException(errorString); |
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} catch (ErrorHandledException ehe) { |
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// Nothing to do here. We assume if we get here, the error has been |
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// written to ouput. Continue on and let it display. |
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} |
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} |
892 | 914 |
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src/edu/ucsb/nceas/metacat/PermissionController.java | ||
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96 | 96 |
* @param myPermission permission type to check for |
97 | 97 |
*/ |
98 | 98 |
public boolean hasPermission(String user, String[]groups, String myPermission) |
99 |
throws SQLException, Exception |
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throws SQLException //, Exception
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100 | 100 |
{ |
101 | 101 |
boolean hasPermission=false; |
102 | 102 |
String [] userPackage=null; |
src/edu/ucsb/nceas/metacat/HandlerException.java | ||
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/** |
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* '$RCSfile$' |
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* Purpose: An Exception thrown when an error occurs because an |
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* AccessionNumber was invalid or used incorrectly |
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* Copyright: 2008 Regents of the University of California and the |
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* National Center for Ecological Analysis and Synthesis |
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* Authors: Michael Daigle |
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* |
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* '$Author: daigle $' |
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* '$Date: 2008-07-06 21:25:34 -0700 (Sun, 06 Jul 2008) $' |
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* '$Revision: 4080 $' |
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* |
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* This program is free software; you can redistribute it and/or modify |
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* it under the terms of the GNU General Public License as published by |
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* the Free Software Foundation; either version 2 of the License, or |
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* (at your option) any later version. |
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17 |
* |
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18 |
* This program is distributed in the hope that it will be useful, |
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19 |
* but WITHOUT ANY WARRANTY; without even the implied warranty of |
|
20 |
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the |
|
21 |
* GNU General Public License for more details. |
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22 |
* |
|
23 |
* You should have received a copy of the GNU General Public License |
|
24 |
* along with this program; if not, write to the Free Software |
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25 |
* Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA |
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*/ |
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|
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package edu.ucsb.nceas.metacat; |
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|
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/** |
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* Exception thrown when an error occurs in a configuration administrative |
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* class |
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*/ |
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public class HandlerException extends Exception { |
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private static final long serialVersionUID = 7997030775672963304L; |
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37 |
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/** |
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* Create a new AdminException. |
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* |
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* @param message The error or warning message. |
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*/ |
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public HandlerException(String message) { |
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super(message); |
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} |
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} |
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src/edu/ucsb/nceas/metacat/DocumentImpl.java | ||
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3310 | 3310 |
* @param groups, user's group |
3311 | 3311 |
*/ |
3312 | 3312 |
public static boolean hasReadPermission(String user, String[] groups, |
3313 |
String docId) throws SQLException, Exception |
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3313 |
String docId) throws SQLException, McdbException
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3314 | 3314 |
{ |
3315 | 3315 |
// Check for READ permission on @docid for @user and/or @groups |
3316 | 3316 |
PermissionController controller = new PermissionController(docId); |
src/edu/ucsb/nceas/metacat/service/PropertyService.java | ||
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45 | 45 |
import edu.ucsb.nceas.utilities.PropertiesMetaData; |
46 | 46 |
import edu.ucsb.nceas.utilities.PropertyNotFoundException; |
47 | 47 |
import edu.ucsb.nceas.utilities.SortedProperties; |
48 |
import edu.ucsb.nceas.utilities.UtilException; |
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49 | 48 |
|
50 | 49 |
/** |
51 | 50 |
* A suite of utility classes for the metadata configuration utility |
... | ... | |
223 | 222 |
} catch (GeneralPropertyException gpe) { |
224 | 223 |
throw new ServiceException("General properties problem while loading properties: " |
225 | 224 |
+ gpe.getMessage()); |
226 |
} catch (UtilException ue) { |
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225 |
} catch (MetacatUtilException ue) {
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227 | 226 |
throw new ServiceException("Utilities problem while loading properties: " |
228 | 227 |
+ ue.getMessage()); |
229 | 228 |
} |
src/edu/ucsb/nceas/metacat/service/BaseService.java | ||
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37 | 37 |
|
38 | 38 |
// package level method reporting if service is refreshable. Basically, |
39 | 39 |
// we only want ServiceService calling this. |
40 |
abstract boolean refreshable(); |
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public abstract boolean refreshable();
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41 | 41 |
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42 | 42 |
// subclass must define doRefresh. It is only called from the refresh() method. |
43 | 43 |
protected abstract void doRefresh() throws ServiceException; |
src/edu/ucsb/nceas/metacat/admin/PropertiesAdmin.java | ||
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47 | 47 |
import edu.ucsb.nceas.utilities.GeneralPropertyException; |
48 | 48 |
import edu.ucsb.nceas.utilities.PropertiesMetaData; |
49 | 49 |
import edu.ucsb.nceas.utilities.SortedProperties; |
50 |
import edu.ucsb.nceas.utilities.UtilException; |
|
50 | 51 |
|
51 | 52 |
/** |
52 | 53 |
* Control the display of the main properties configuration page and the |
... | ... | |
203 | 204 |
String dataDir = PropertyService.getProperty("application.datafilepath"); |
204 | 205 |
try { |
205 | 206 |
FileUtil.createDirectory(dataDir); |
206 |
} catch (IOException ioe) {
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207 |
} catch (UtilException ue) {
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207 | 208 |
String errorString = "Could not create directory: " + dataDir + |
208 |
" : " + ioe.getMessage();
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209 |
" : " + ue.getMessage();
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209 | 210 |
logMetacat.error(errorString); |
210 | 211 |
validationErrors.add(errorString); |
211 | 212 |
} |
... | ... | |
214 | 215 |
String inlineDataDir = PropertyService.getProperty("application.inlinedatafilepath"); |
215 | 216 |
try { |
216 | 217 |
FileUtil.createDirectory(inlineDataDir); |
217 |
} catch (IOException ioe) {
|
|
218 |
} catch (UtilException ue) {
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218 | 219 |
String errorString = "Could not create directory: " + inlineDataDir + |
219 |
" : " + ioe.getMessage();
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220 |
" : " + ue.getMessage();
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220 | 221 |
logMetacat.error(errorString); |
221 | 222 |
validationErrors.add(errorString); |
222 | 223 |
} |
... | ... | |
225 | 226 |
String documentfilepath = PropertyService.getProperty("application.documentfilepath"); |
226 | 227 |
try { |
227 | 228 |
FileUtil.createDirectory(documentfilepath); |
228 |
} catch (IOException ioe) {
|
|
229 |
} catch (UtilException ue) {
|
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229 | 230 |
String errorString = "Could not create directory: " + documentfilepath + |
230 |
" : " + ioe.getMessage();
|
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231 |
" : " + ue.getMessage();
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231 | 232 |
logMetacat.error(errorString); |
232 | 233 |
validationErrors.add(errorString); |
233 | 234 |
} |
... | ... | |
236 | 237 |
String tempDir = PropertyService.getProperty("application.tempDir"); |
237 | 238 |
try { |
238 | 239 |
FileUtil.createDirectory(tempDir); |
239 |
} catch (IOException ioe) {
|
|
240 |
} catch (UtilException ue) {
|
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240 | 241 |
String errorString = "Could not create directory: " + tempDir + |
241 |
" : " + ioe.getMessage();
|
|
242 |
" : " + ue.getMessage();
|
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242 | 243 |
logMetacat.error(errorString); |
243 | 244 |
validationErrors.add(errorString); |
244 | 245 |
} |
... | ... | |
247 | 248 |
String replLogDir = PropertyService.getProperty("replication.logdir"); |
248 | 249 |
try { |
249 | 250 |
FileUtil.createDirectory(replLogDir); |
250 |
} catch (IOException ioe) {
|
|
251 |
} catch (UtilException ue) {
|
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251 | 252 |
String errorString = "Could not create directory: " + replLogDir + |
252 |
" : " + ioe.getMessage();
|
|
253 |
" : " + ue.getMessage();
|
|
253 | 254 |
logMetacat.error(errorString); |
254 | 255 |
validationErrors.add(errorString); |
255 | 256 |
} |
src/edu/ucsb/nceas/metacat/admin/BackupAdmin.java | ||
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38 | 38 |
import edu.ucsb.nceas.metacat.service.PropertyService; |
39 | 39 |
import edu.ucsb.nceas.metacat.service.ServiceException; |
40 | 40 |
import edu.ucsb.nceas.metacat.service.ServiceService; |
41 |
import edu.ucsb.nceas.metacat.util.MetacatUtilException; |
|
41 | 42 |
import edu.ucsb.nceas.metacat.util.RequestUtil; |
42 | 43 |
import edu.ucsb.nceas.metacat.util.SystemUtil; |
43 | 44 |
import edu.ucsb.nceas.utilities.FileUtil; |
... | ... | |
119 | 120 |
} catch (ServletException se) { |
120 | 121 |
throw new AdminException("Problem forwarding request while " |
121 | 122 |
+ "initializing backup configuration page: " + se.getMessage()); |
122 |
} catch (UtilException ue) {
|
|
123 |
} catch (MetacatUtilException mue) {
|
|
123 | 124 |
throw new AdminException("Problem discovering backup directory while " |
124 |
+ "initializing backup configuration page: " + ue.getMessage()); |
|
125 |
+ "initializing backup configuration page: " + mue.getMessage());
|
|
125 | 126 |
} |
126 | 127 |
} else { |
127 | 128 |
// The configuration form is being submitted and needs to be |
... | ... | |
151 | 152 |
|
152 | 153 |
ServiceService.refreshService("SkinPropertyService"); |
153 | 154 |
SystemUtil.storeExternalDirLocation(backupDir); |
154 |
} catch (IOException ue) {
|
|
155 |
} catch (UtilException ue) {
|
|
155 | 156 |
String errorMessage = "Could not create directory: " + hiddenBackupDir |
156 | 157 |
+ " : " + ue.getMessage() + ". Please try again"; |
157 | 158 |
processingErrors.add(errorMessage); |
src/edu/ucsb/nceas/metacat/ErrorHandledException.java | ||
---|---|---|
1 |
/** |
|
2 |
* '$RCSfile$' |
|
3 |
* Purpose: An Exception thrown when an error occurs because an |
|
4 |
* AccessionNumber was invalid or used incorrectly |
|
5 |
* Copyright: 2009 Regents of the University of California and the |
|
6 |
* National Center for Ecological Analysis and Synthesis |
|
7 |
* Authors: Michael Daigle |
|
8 |
* |
|
9 |
* '$Author: daigle $' |
|
10 |
* '$Date: 2008-07-06 21:25:34 -0700 (Sun, 06 Jul 2008) $' |
|
11 |
* '$Revision: 4080 $' |
|
12 |
* |
|
13 |
* This program is free software; you can redistribute it and/or modify |
|
14 |
* it under the terms of the GNU General Public License as published by |
|
15 |
* the Free Software Foundation; either version 2 of the License, or |
|
16 |
* (at your option) any later version. |
|
17 |
* |
|
18 |
* This program is distributed in the hope that it will be useful, |
|
19 |
* but WITHOUT ANY WARRANTY; without even the implied warranty of |
|
20 |
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the |
|
21 |
* GNU General Public License for more details. |
|
22 |
* |
|
23 |
* You should have received a copy of the GNU General Public License |
|
24 |
* along with this program; if not, write to the Free Software |
|
25 |
* Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA |
|
26 |
*/ |
|
27 |
|
|
28 |
package edu.ucsb.nceas.metacat; |
|
29 |
|
|
30 |
/** |
|
31 |
* Exception thrown when an error occurs in a configuration administrative |
|
32 |
* class |
|
33 |
*/ |
|
34 |
public class ErrorHandledException extends Exception { |
|
35 |
|
|
36 |
private static final long serialVersionUID = 6155049982476516738L; |
|
37 |
|
|
38 |
/** |
|
39 |
* Create a new AdminException. |
|
40 |
* |
|
41 |
* @param message The error or warning message. |
|
42 |
*/ |
|
43 |
public ErrorHandledException(String message) { |
|
44 |
super(message); |
|
45 |
} |
|
46 |
} |
|
0 | 47 |
Also available in: Unified diff
Add archival read funtionality (jar/kar/war files)