Metacat

/**

 *  '$RCSfile$'

 *    Purpose: An Exception thrown when an error occurs because an 

 *             AccessionNumber was invalid or used incorrectly

 *  Copyright: 2008 Regents of the University of California and the

 *             National Center for Ecological Analysis and Synthesis

 *    Authors: Michael Daigle

 *

 *   '$Author: daigle $'

 *     '$Date: 2008-07-06 21:25:34 -0700 (Sun, 06 Jul 2008) $'

 * '$Revision: 4080 $'

 *

 * This program is free software; you can redistribute it and/or modify

 * it under the terms of the GNU General Public License as published by

 * the Free Software Foundation; either version 2 of the License, or

 * (at your option) any later version.

 *

 * This program is distributed in the hope that it will be useful,

 * but WITHOUT ANY WARRANTY; without even the implied warranty of

 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the

 * GNU General Public License for more details.

 *

 * You should have received a copy of the GNU General Public License

 * along with this program; if not, write to the Free Software

 * Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA  02111-1307  USA

 */

package edu.ucsb.nceas.shared;

/**

 * Exception thrown when an error occurs in a configuration administrative

 * class

 */

public class AccessException extends BaseException {

	private static final long serialVersionUID = -8436697355629175917L;

	/**

	 * Create a new AccessException.

	 *

	 * @param message The error or warning message.

	 */

	public AccessException(String message) {

		super(message);

	}

	public AccessException(String message, BaseException deeperException) {

		super(message, deeperException);

	}

}

/**

 *  '$RCSfile$'

 *    Purpose: A Class that holds the data from the scheduled_task 

 *             table in the database. 

 *  Copyright: 2009 Regents of the University of California and the

 *             National Center for Ecological Analysis and Synthesis

 *    Authors: Michael Daigle

 * 

 *   '$Author: daigle $'

 *     '$Date: 2009-03-23 13:56:56 -0800 (Mon, 23 Mar 2009) $'

 * '$Revision: 4854 $'

 *

 * This program is free software; you can redistribute it and/or modify

 * it under the terms of the GNU General Public License as published by

 * the Free Software Foundation; either version 2 of the License, or

 * (at your option) any later version.

 *

 * This program is distributed in the hope that it will be useful,

 * but WITHOUT ANY WARRANTY; without even the implied warranty of

 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the

 * GNU General Public License for more details.

 *

 * You should have received a copy of the GNU General Public License

 * along with this program; if not, write to the Free Software

 * Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA  02111-1307  USA

 */

package edu.ucsb.nceas.shared;

import java.sql.Timestamp;

public class BaseDAO {

	private Long _id;

	private Timestamp _createTime;

	private Timestamp _modTime;

	private String _status;

	public Long getId() {

		return _id;

	}

	public void setId(Long id) {

		_id = id;

	}

	public Timestamp getCreateTime() {

		return _createTime;

	}

	public void setCreateTime(Timestamp createTime) {

		_createTime = createTime;

	}

	public Timestamp getModTime() {

		return _modTime;

	}

	public void setModTime(Timestamp modTime) {

		_modTime = modTime;

	}

	public String getStatus() {

		return _status;

	}

	public void setStatus(String status) {

		_status = status;

	}

}

/**

 *  '$RCSfile$'

 *    Purpose: A Class that manages database access 

 *             information.

 *  Copyright: 2009 Regents of the University of California and the

 *             National Center for Ecological Analysis and Synthesis

 *    Authors: Michael Daigle

 * 

 *   '$Author: daigle $'

 *     '$Date: 2009-03-23 13:56:56 -0800 (Mon, 23 Mar 2009) $'

 * '$Revision: 4854 $'

 *

 * This program is free software; you can redistribute it and/or modify

 * it under the terms of the GNU General Public License as published by

 * the Free Software Foundation; either version 2 of the License, or

 * (at your option) any later version.

 *

 * This program is distributed in the hope that it will be useful,

 * but WITHOUT ANY WARRANTY; without even the implied warranty of

 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the

 * GNU General Public License for more details.

 *

 * You should have received a copy of the GNU General Public License

 * along with this program; if not, write to the Free Software

 * Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA  02111-1307  USA

 */

package edu.ucsb.nceas.shared;

import java.sql.ResultSet;

import java.sql.SQLException;

import edu.ucsb.nceas.metacat.DBConnection;

import edu.ucsb.nceas.metacat.DBConnectionPool;

public abstract class BaseAccess {

	protected DBConnection conn = null;

    protected int serialNumber = -1;

    protected ResultSet rs = null;

    protected BaseAccess(String methodName) throws AccessException {

        //check out DBConnection

    	try {

    		conn = DBConnectionPool.

                	getDBConnection("methodName");

    		serialNumber = conn.getCheckOutSerialNumber();

    	} catch (SQLException sqle) {

    		throw new AccessException("Could not get connection from DB connection pool: " 

    				+ sqle.getMessage());

    	}

    }

    protected abstract BaseDAO populateDAO(ResultSet resultSet) throws SQLException ;

}

/**

 *  '$RCSfile$'

 *    Purpose: An Exception thrown when an error occurs because an 

 *             AccessionNumber was invalid or used incorrectly

 *  Copyright: 2008 Regents of the University of California and the

 *             National Center for Ecological Analysis and Synthesis

 *    Authors: Michael Daigle

 *

 *   '$Author: daigle $'

 *     '$Date: 2008-07-06 21:25:34 -0700 (Sun, 06 Jul 2008) $'

 * '$Revision: 4080 $'

 *

 * This program is free software; you can redistribute it and/or modify

 * it under the terms of the GNU General Public License as published by

 * the Free Software Foundation; either version 2 of the License, or

 * (at your option) any later version.

 *

 * This program is distributed in the hope that it will be useful,

 * but WITHOUT ANY WARRANTY; without even the implied warranty of

 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the

 * GNU General Public License for more details.

 *

 * You should have received a copy of the GNU General Public License

 * along with this program; if not, write to the Free Software

 * Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA  02111-1307  USA

 */

package edu.ucsb.nceas.shared;

/**

 * Exception thrown when an error occurs in a configuration administrative

 * class

 */

public class BaseException extends Exception {

	private static final long serialVersionUID = 1331212806605660813L;

	private static String _coreMessage;

	/**

	 * Create a new AccessException.

	 *

	 * @param message The error or warning message.

	 */

	public BaseException(String message) {

		super(message);

		_coreMessage = message;

	}

	/**

	 * Create a new BaseException.

	 *

	 * @param message The error or warning message.

	 */

	public BaseException(String message, BaseException deeperException) {

		super(message + " --> " + deeperException.getMessage());

		_coreMessage = deeperException.getCoreMessage();

	}

	public String getCoreMessage() {

		return _coreMessage;

	}

	public void setCoreMessage(String coreMessage) {

		_coreMessage = coreMessage;

	}

}

/**

 *  '$RCSfile$'

 *    Purpose: A class represent a DBConnection pool. Another user can use the

 *    object to initial a connection pool, get db connection or return it. 

 *  Copyright: 2000 Regents of the University of California and the

 *             National Center for Ecological Analysis and Synthesis

 *    Authors: Jing Tao

 *

 *   '$Author$'

 *     '$Date$'

 * '$Revision$'

 *

 * This program is free software; you can redistribute it and/or modify

 * it under the terms of the GNU General Public License as published by

 * the Free Software Foundation; either version 2 of the License, or

 * (at your option) any later version.

 *

 * This program is distributed in the hope that it will be useful,

 * but WITHOUT ANY WARRANTY; without even the implied warranty of

 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the

 * GNU General Public License for more details.

 *

 * You should have received a copy of the GNU General Public License

 * along with this program; if not, write to the Free Software

 * Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA  02111-1307  USA

 */

package edu.ucsb.nceas.metacat;

import java.io.*;

import java.util.Vector;

import java.lang.*;

import java.sql.*;

import java.util.Stack;

import java.util.Hashtable;

import java.util.Enumeration;

import org.apache.log4j.Logger;

import edu.ucsb.nceas.metacat.service.PropertyService;

import edu.ucsb.nceas.utilities.PropertyNotFoundException;

/** 

 * A class represent a DBConnection pool. Another user can use the

 * object to initial a connection pool, get db connection or return it.

 * This a singleton class, this means only one instance of this class could

 * be in the program at one time. 

 */

public class DBConnectionPool implements Runnable

{

  //static attributes

  private static DBConnectionPool instance;

  private static Vector connectionPool;

  private static Thread runner;

  private static int countOfReachMaximum = 0;

  private static Logger logMetacat = Logger.getLogger(DBConnectionPool.class);

  private static int maxConnNum;

  private static int initConnNum;

  private static int incrConnNum;

  private static long maxAge;

  private static long maxConnTime;

  private static int maxUsageNum;

  private static String dbConnRecyclThrd;

  private static long cyclTimeDbConn;

  final static int MAXIMUMCONNECTIONNUMBER;

  final static int INITIALCONNECTIONNUMBER;

  final static int INCREASECONNECTIONNUMBER;

  final static long MAXIMUMAGE;

  final static long MAXIMUMCONNECTIONTIME;

  final static int MAXIMUMUSAGENUMBER;

  final static String DBCONNECTIONRECYCLETHREAD ;

  final static long CYCLETIMEOFDBCONNECTION;

  static {

		int maxConnNum = 0;

		int initConnNum = 0;

		int incrConnNum = 0;

		long maxAge = 0;

		long maxConnTime = 0;

		int maxUsageNum = 0;

		String dbConnRecyclThrd = null;

		long cyclTimeDbConn = 0;

		try {

			// maximum connection number in the connection pool

			maxConnNum = Integer.parseInt(PropertyService

					.getProperty("database.maximumConnections"));

			initConnNum = Integer.parseInt(PropertyService

					.getProperty("database.initialConnections"));

			incrConnNum = Integer.parseInt(PropertyService

					.getProperty("database.incrementConnections"));

			maxAge = Integer.parseInt(PropertyService

					.getProperty("database.maximumConnectionAge"));

			maxConnTime = Long.parseLong(PropertyService

					.getProperty("database.maximumConnectionTime"));

			maxUsageNum = Integer.parseInt(PropertyService

					.getProperty("database.maximumUsageNumber"));

			dbConnRecyclThrd = PropertyService

					.getProperty("database.runDBConnectionRecycleThread");

			cyclTimeDbConn = Long.parseLong(PropertyService

					.getProperty("database.cycleTimeOfDBConnection"));

		} catch (PropertyNotFoundException pnfe) {

			System.err.println("Could not get property in static block: "

					+ pnfe.getMessage());

		}

		MAXIMUMCONNECTIONNUMBER = maxConnNum;

		INITIALCONNECTIONNUMBER = initConnNum;

		INCREASECONNECTIONNUMBER = incrConnNum;

		MAXIMUMAGE = maxAge;

		MAXIMUMCONNECTIONTIME = maxConnTime;

		MAXIMUMUSAGENUMBER = maxUsageNum;

		DBCONNECTIONRECYCLETHREAD  = dbConnRecyclThrd;

		CYCLETIMEOFDBCONNECTION = cyclTimeDbConn;

	}

  // the number for trying to check out a connection in the pool in

  // getDBConnection method

  final static int LIMIT = 2;

  final static int FREE = 0; //status of a connection

  final static int BUSY = 1; //statis of a connection

  /**

   * Returns the single instance, creating one if it's the

   * first time this method is called.

   */

  public static synchronized DBConnectionPool getInstance()

                                 throws SQLException 

  {

    if (instance == null) {

      instance = new DBConnectionPool();

      Logger log = Logger.getLogger(DBConnectionPool.class);

      log.debug("MaximumConnectionNumber: "+MAXIMUMCONNECTIONNUMBER);

      log.debug("Intial connection number: "+INITIALCONNECTIONNUMBER);

      log.debug("Increated connection Number: "+INCREASECONNECTIONNUMBER);

      log.debug("Maximum connection age: "+MAXIMUMAGE);

      log.debug("Maximum connection time: "+MAXIMUMCONNECTIONTIME);

      log.debug("Maximum usage count: "+MAXIMUMUSAGENUMBER);

      log.debug("Running recycle thread or not: "+DBCONNECTIONRECYCLETHREAD);

      log.debug("Cycle time of recycle: "+CYCLETIMEOFDBCONNECTION); 

    }

    return instance;

  }

  /**

   * This is a private constructor since it is singleton

   */

  private DBConnectionPool()  throws SQLException 

  {

    connectionPool = new Vector();

    initialDBConnectionPool();

    //running the thread to recycle DBConnection

    if (DBCONNECTIONRECYCLETHREAD.equals("on"))

    {

      runner = new Thread(this);

      runner.start();

    }

  }//DBConnection

  /**

   * Method to get the size of DBConnectionPool

   */

  public int getSizeOfDBConnectionPool()

  {

    return connectionPool.size();

  }

  /**

   * Method to initial a pool of DBConnection objects 

   */

  private void initialDBConnectionPool() throws SQLException 

  {

    DBConnection dbConn = null;

    for ( int i = 0; i < INITIALCONNECTIONNUMBER; i++ ) 

    {

      //create a new object of DBConnection

      //this DBConnection object has a new connection in it

      //it automatically generate the createtime and tag

      dbConn = new DBConnection();

      //put DBConnection into vetor

      connectionPool.add(dbConn);

    }    

  }//initialDBConnectionPool

  /**

   * Method to get Connection object (Not DBConnection)

   */

  /*public static Connection getConnection() throws SQLException

  {

    DBConnection dbConn = null;

    //get a DBConnection

    dbConn = getDBConnection();

    //get connection object in DBConnection object

    //The following getConnections method is in DBConnection class

    return dbConn.getConnections();

  }*/

  /**

   * Method to get a DBConnection in connection pool

   * 1) try to get a DBConnection from DBConnection pool

   * 2) if 1) failed, then check the size of pool. If the size reach the

   *    maximum number of connection, throw a exception: couldn't get one

   * 3) If the size is less than the maximum number of connectio, create some

   *    new connections and recursive get one

   * @param methodName, the name of method which will check connection out

   */

  public static synchronized DBConnection getDBConnection(String methodName) 

                                                throws SQLException

  {

    if (instance == null) {

      instance = DBConnectionPool.getInstance();

    }

    DBConnection db = null;

    int random = 0; //random number

    int index = 0; //index

    int size = 0; //size of connection pool

    logMetacat.debug("Try to checking out connection...");

    size = connectionPool.size();

    logMetacat.debug("size of connection pool: "+size);

     //try every DBConnection in the pool

    //every DBConnection will be try LIMITE times

    for (int j=0 ; j<LIMIT; j++)

    {

       //create a random number as the started index for connection pool

      //So that the connection ofindex of 0 wouldn't be a the heaviest user

      random = (new Double (Math.random()*100)).intValue();

      for (int i=0; i<size; i++)

      {

        index =(i+random)%size;

        db = (DBConnection) connectionPool.elementAt(index);

        logMetacat.debug("Index: "+index);

        logMetacat.debug("Tag: "+db.getTag());

        logMetacat.debug("Status: "+db.getStatus());

        //check if the connection is free

        if (db.getStatus()==FREE)

        {

          //If this connection is good, return this DBConnection

          if (validateDBConnection(db))

          {

            //set this DBConnection status

            db.setStatus(BUSY);

            //increase checkout serial number

            db.increaseCheckOutSerialNumber(1);

            //increase one usageCount

            db.increaseUsageCount(1);

            //set method name to DBConnection

            db.setCheckOutMethodName(methodName);

            db.setAutoCommit(true);

            //debug message

            logMetacat.debug("The connection is checked out: "

                                       +db.getTag());

            logMetacat.debug("The method for checking is: " 

                                              +db.getCheckOutMethodName());

            logMetacat.debug("The age is "+db.getAge());

            logMetacat.debug("The usage is "+db.getUsageCount());

            logMetacat.debug("The conection time it has: "

                                                +db.getConnectionTime());

            //set check out time

            db.setCheckOutTime(System.currentTimeMillis());

            // set count of reach maximum 0 because it can check out

            countOfReachMaximum =0;

            return db;

          }//if

          else//The DBConnection has some problem

          {

            //close this DBConnection

            db.close();

            //remove it form connection pool

            connectionPool.remove(index);

            //insert a new DBConnection to same palace

            db = new DBConnection();

            connectionPool.insertElementAt(db, index);

          }//else

        }//if

      }//for

    }//for

    //if couldn't get a connection, we should increase DBConnection pool

    //if the connection pool size is less than maximum connection number

    if ( size < MAXIMUMCONNECTIONNUMBER )

    {

       if ((size+INCREASECONNECTIONNUMBER) < MAXIMUMCONNECTIONNUMBER)

       { 

         //if we can create INCREASECONNECTIONNUMBER of new DBConnection

         //add to connection pool

         for ( int i=0; i<INCREASECONNECTIONNUMBER; i++)

         {

           DBConnection dbConn = new DBConnection();

           connectionPool.add(dbConn);

         }//for

       }//if

       else

       {

         //There is no enough room to increase INCREASECONNECTIONNUMBER 

         //we create new DBCoonection to Maximum connection number

         for (int i= size+1; i<= MAXIMUMCONNECTIONNUMBER; i++)

         {

           DBConnection dbConn = new DBConnection();

           connectionPool.add(dbConn);

         }//for

       }//else

    }//if

    else

    {

      /*throw new SQLException("The maximum of " +MAXIMUMCONNECTIONNUMBER + 

                            " open db connections is reached." +

                            " New db connection to MetaCat" +

                            " cannot be established.");*/

       logMetacat.fatal("The maximum of " +MAXIMUMCONNECTIONNUMBER + 

                            " open db connections is reached." +

                            " New db connection to MetaCat" +

                            " cannot be established.");

       countOfReachMaximum ++;

       if (countOfReachMaximum >= 10)

       {

         countOfReachMaximum =0;

         logMetacat.fatal("finally could not get dbconnection");

         return null;

       }

       else

       {

         //if couldn't get a connection, sleep 20 seconds and try again.

         try

         {

           logMetacat.info("sleep for could not get dbconnection");

           Thread.sleep(5000);

         }

         catch (Exception e)

        {

           logMetacat.error("Exception in getDBConnection" + e.getMessage());

        }

      }

    }//else

    //recursive to get new connection    

    return getDBConnection(methodName); 

  }//getDBConnection

  /** 

   * Method to check if a db connection works fine or not

   * Check points include:

   * 1. check the usageCount if it is too many

   * 2. check the dbconne age if it is too old

   * 3. check the connection time if it is too long

   * 4. run simple sql query

   *

   * @param dbConn, the DBConnection object need to check

   */

  private static boolean validateDBConnection (DBConnection dbConn)

  {

    //Check if the DBConnection usageCount if it is too many

    if (dbConn.getUsageCount() >= MAXIMUMUSAGENUMBER )

    {

      logMetacat.debug("Connection usageCount is too many: "+

      dbConn.getUsageCount());

      return false;

    }

    //Check if the DBConnection has too much connection time

    if (dbConn.getConnectionTime() >= MAXIMUMCONNECTIONTIME)

    {

      logMetacat.debug("Connection has too much connection time: "+

      dbConn.getConnectionTime());

      return false;

    }

    //Check if the DBConnection is too old

    if (dbConn.getAge() >=MAXIMUMAGE)

    {

      logMetacat.debug("Connection is too old: "+dbConn.getAge());

      return false;

    }

    //Try to run a simple query

    try

    {

      long startTime=System.currentTimeMillis();

      DatabaseMetaData metaData = dbConn.getMetaData();

      long stopTime=System.currentTimeMillis();

      //increase one usagecount

      dbConn.increaseUsageCount(1);

      //increase connection time

      dbConn.setConnectionTime(stopTime-startTime);

    }

    catch (Exception e)

    {

      logMetacat.error("Error in validateDBConnection: "

                                +e.getMessage());

      return false;

    }

    return true;

  }//validateDBConnection()

  /**

   * Method to return a connection to DBConnection pool.

   * @param conn, the Connection object need to check in

   */

  public static synchronized void returnDBConnection(DBConnection conn, 

                                                              int serialNumber)

  {

    int index = -1;

    DBConnection dbConn = null;

    index = getIndexOfPoolForConnection(conn);

    if ( index ==-1 )

    {

      logMetacat.info("Couldn't find a DBConnection in the pool"

                                  +" which have same tag to the returned"

                                  +" DBConnetion object");

      return;

    }//if

    else

    {

      //check the paramter - serialNumber which will be keep in calling method

      //if it is as same as the object's checkoutserial number.

      //if it is same return it. If it is not same, maybe the connection already

      // was returned ealier.

      logMetacat.debug("serial number in Connection: "

                                      +conn.getCheckOutSerialNumber());

      logMetacat.debug("serial number in local: "+serialNumber);

      if (conn.getCheckOutSerialNumber() == serialNumber)

      {

        dbConn = (DBConnection) connectionPool.elementAt(index);

        //set status to free

        dbConn.setStatus(FREE);

        //count connection time

        dbConn.setConnectionTime

                          (System.currentTimeMillis()-dbConn.getCheckOutTime());

        //set check out time to 0

        dbConn.setCheckOutTime(0);

        logMetacat.debug("Connection: "+dbConn.getTag()+" checked in.");

        logMetacat.debug("Connection: "+dbConn.getTag()+"'s status: "

                                                    +dbConn.getStatus());

      }//if

      else

      {

        logMetacat.info("This DBConnection couldn't return");

      }//else

    }//else

  }//returnConnection

  /**

   * Given a returned DBConnection, try to find the index of DBConnection object

   * in dbConnection pool by comparing DBConnection' tag and conn.toString.

   * If couldn't find , -1 will be returned.

   * @param conn, the connection need to be found

   */

  private static synchronized int getIndexOfPoolForConnection(DBConnection conn)

  {

    int index = -1;

    String info = null;

    //if conn is null return -1 too

    if (conn==null)

    {

      return -1;

    }

    //get tag of this returned DBConnection

    info = conn.getTag();

    //if the tag is null or empty, -1 will be returned

    if (info==null || info.equals(""))

    {

      return index;

    }

    //compare this info to the tag of every DBConnection in the pool

    for ( int i=0; i< connectionPool.size(); i++)

    {

      DBConnection dbConn = (DBConnection) connectionPool.elementAt(i);

      if (info.equals(dbConn.getTag()))

      {

        index = i;

        break;

      }//if

    }//for

    return index;

  }//getIndexOfPoolForConnection  

  /**

   * Method to shut down all connections

   */

  public static void release()

  {

    //shut down the backgroud recycle thread

    if (DBCONNECTIONRECYCLETHREAD.equals("on"))

    {

      runner.interrupt();

    }

    //cose every dbconnection in the pool

    synchronized(connectionPool)

    {

      for (int i=0;i<connectionPool.size();i++)

      {

        try

        {

          DBConnection dbConn= (DBConnection) connectionPool.elementAt(i);

          dbConn.close();

        }//try

        catch (SQLException e)

        {

          logMetacat.error("Error in release connection: "

                                            +e.getMessage());

        }//catch

      }//for

    }//synchronized

  }//release()

  /**

   * periodically to recycle the connection

   */

  public void run()

  {

    DBConnection dbConn = null;

    //keep the thread running

    while (true)

    {

      //check every dbconnection in the pool

      synchronized(connectionPool)

      {

        for (int i=0; i<connectionPool.size(); i++)

        {

          dbConn = (DBConnection) connectionPool.elementAt(i);

          //if a DBConnection conncectioning time for one check out is greater 

          //than 30000 milliseconds print it out

          if (dbConn.getStatus()==BUSY && 

            (System.currentTimeMillis()-dbConn.getCheckOutTime())>=30000)

          {

            logMetacat.fatal("This DBConnection is checked out for: "

            +(System.currentTimeMillis()-dbConn.getCheckOutTime())/1000

            +" secs");

            logMetacat.fatal(dbConn.getTag());

            logMetacat.error("method: "

                                          +dbConn.getCheckOutMethodName());

          }

          //check the validation of free connection in the pool

          if (dbConn.getStatus() == FREE)

          {

            try

            {

              //try to print out the warning message for every connection

              if (dbConn.getWarningMessage()!=null)

              {

                logMetacat.warn("Warning for connection "

                  +dbConn.getTag()+" : "+ dbConn.getWarningMessage());

              }

              //check if it is valiate, if not create new one and replace old one

              if (!validateDBConnection(dbConn))

              {

                logMetacat.debug("Recyle it: "+ dbConn.getTag());

                //close this DBConnection

                dbConn.close();

                //remove it form connection pool

                connectionPool.remove(i);

                //insert a new DBConnection to same palace

                dbConn = new DBConnection();

                connectionPool.insertElementAt(dbConn, i);

               }//if

            }//try

            catch (SQLException e)

            {

              logMetacat.error("Error in DBConnectionPool.run: "

                                              +e.getMessage());

            }//catch

          }//if

        }//for

      }//synchronize   

      //Thread sleep 

      try

      {

        Thread.sleep(CYCLETIMEOFDBCONNECTION);

      }

      catch (Exception e)

      {

        logMetacat.error("Error in DBConnectionPool.run: "

                                              +e.getMessage());

      }

    }//while

  }//run

  /**

   * Method to get the number of free DBConnection in DBConnection pool

   */

  public static synchronized int getFreeDBConnectionNumber()

  {

    int numberOfFreeDBConnetion = 0; //return number

    DBConnection db = null; //single DBconnection

    int poolSize = 0; //size of connection pool

    //get the size of DBConnection pool

    poolSize = connectionPool.size();

    //Check every DBConnection in the pool

    for ( int i=0; i<poolSize; i++)

    {

      db = (DBConnection) connectionPool.elementAt(i);

      //check the status of db. If it is free, count it

      if (db.getStatus() == FREE)

      {

        numberOfFreeDBConnetion++;

      }//if

    }//for

    //return the count result

    return numberOfFreeDBConnetion;

  }//getFreeDBConnectionNumber

   /**

   * Method to print out the method name which have busy DBconnection

   */

  public void printMethodNameHavingBusyDBConnection()

  {

    DBConnection db = null; //single DBconnection

    int poolSize = 0; //size of connection pool

    //get the size of DBConnection pool

    poolSize = connectionPool.size();

    //Check every DBConnection in the pool

    for ( int i=0; i<poolSize; i++)

    {

      db = (DBConnection) connectionPool.elementAt(i);

      //check the status of db. If it is free, count it

      if (db.getStatus() == BUSY)

      {

        logMetacat.warn("This method having a busy DBConnection: "

                                    +db.getCheckOutMethodName());

        logMetacat.warn("The busy DBConnection tag is: "

                                    +db.getTag());

      }//if

    }//for

  }//printMethodNameHavingBusyDBConnection

  /**

   * Method to decrease dbconnection pool size when all dbconnections are idle

   * If all connections are free and connection pool size greater than 

   * initial value, shrink connection pool size to intital value

   */

  public static synchronized boolean shrinkConnectionPoolSize() 

  {

     int connectionPoolSize = 0; //store the number of dbconnection pool size

     int freeConnectionSize = 0; //store the number of free dbconnection in pool

     int difference = 0; // store the difference number between connection size

                         // and free connection

     boolean hasException = false; //to check if has a exception happend

     boolean result = false; //result

     DBConnection conn = null; // the dbconnection

     connectionPoolSize = connectionPool.size();

     freeConnectionSize = getFreeDBConnectionNumber();

     difference = connectionPoolSize - freeConnectionSize;

     if(freeConnectionSize < connectionPoolSize){

    	 logMetacat.warn(difference + " connection(s) " +

                        "being used and connection pool size is " +connectionPoolSize);

     } else {

    	 logMetacat.debug("Connection pool size: " +connectionPoolSize);

    	 logMetacat.debug("Free Connection number: "+freeConnectionSize);

     }

     //If all connections are free and connection pool size greater than 

     //initial value, shrink connection pool size to intital value

     if (difference == 0 && connectionPoolSize > INITIALCONNECTIONNUMBER)

     {

       //db connection having index from  to connectionpoolsize -1

       //intialConnectionnumber should be close and remove from pool

       for ( int i=connectionPoolSize-1; i >= INITIALCONNECTIONNUMBER ; i--)

       {

         //get the dbconnection from pool

         conn = (DBConnection) connectionPool.elementAt(i);

         try

         {

           //close conn

           conn.close();

         }//try

         catch (SQLException e)

         { 

           // set hadException ture

           hasException = true;

           logMetacat.error("Couldn't close a DBConnection in " +

                            "DBConnectionPool.shrinkDBConnectionPoolSize: " +

                            e.getMessage());

         }//catch

        //remove it from pool

        connectionPool.remove(i);

        // becuase enter the loop, set result true

        result = true;

       }//for

     }//if

     //if hasException is true ( there at least once exception happend)

     // the result should be false

     if (hasException)

     {

       result =false;

     }//if

     // return result

     return result;

  }//shrinkDBConnectionPoolSize

    /**

   * Method to decrease dbconnection pool size when all dbconnections are idle

   * If all connections are free and connection pool size greater than 

   * initial value, shrink connection pool size to intital value

   */

  public static synchronized void shrinkDBConnectionPoolSize() 

  {

     int connectionPoolSize = 0; //store the number of dbconnection pool size

     int freeConnectionSize = 0; //store the number of free dbconnection in pool

     int difference = 0; // store the difference number between connection size

                         // and free connection

     DBConnection conn = null; // the dbconnection

     connectionPoolSize = connectionPool.size();

     freeConnectionSize = getFreeDBConnectionNumber();

     difference = connectionPoolSize - freeConnectionSize;

     if(freeConnectionSize < connectionPoolSize){

         logMetacat.warn(difference + " connection(s) " +

                        "being used and connection pool size is " +connectionPoolSize);

     } else {

         logMetacat.debug("Connection pool size: " +connectionPoolSize);

         logMetacat.debug("Free Connection number: "+freeConnectionSize);

     }

     //If all connections are free and connection pool size greater than 

     //initial value, shrink connection pool size to intital value

     if (difference == 0 && connectionPoolSize > INITIALCONNECTIONNUMBER)

     {

       //db connection having index from  to connectionpoolsize -1

       //intialConnectionnumber should be close and remove from pool

       for ( int i=connectionPoolSize-1; i >= INITIALCONNECTIONNUMBER ; i--)

       {

         //get the dbconnection from pool

         conn = (DBConnection) connectionPool.elementAt(i);

         //make sure again the DBConnection status is free

         if (conn.getStatus()==FREE)

         {

           try

           {

             //close conn

             conn.close();

           }//try

           catch (SQLException e)

           { 

             logMetacat.error("Couldn't close a DBConnection in " +

                            "DBConnectionPool.shrinkDBConnectionPoolSize: " +

                            e.getMessage());

           }//catch

           //remove it from pool

           connectionPool.remove(i);

         }//if

       }//for

     }//if

  }//shrinkDBConnectionPoolSize

}//DBConnectionPool

/**

 *  '$RCSfile$'

 *    Purpose: An Exception thrown when an error occurs because an 

 *             AccessionNumber was invalid or used incorrectly

 *  Copyright: 2008 Regents of the University of California and the

 *             National Center for Ecological Analysis and Synthesis

 *    Authors: Michael Daigle

 *

 *   '$Author: daigle $'

 *     '$Date: 2008-07-06 21:25:34 -0700 (Sun, 06 Jul 2008) $'

 * '$Revision: 4080 $'

 *

 * This program is free software; you can redistribute it and/or modify

 * it under the terms of the GNU General Public License as published by

 * the Free Software Foundation; either version 2 of the License, or

 * (at your option) any later version.

 *

 * This program is distributed in the hope that it will be useful,

 * but WITHOUT ANY WARRANTY; without even the implied warranty of

 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the

 * GNU General Public License for more details.

 *

 * You should have received a copy of the GNU General Public License

 * along with this program; if not, write to the Free Software

 * Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA  02111-1307  USA

 */

package edu.ucsb.nceas.metacat;

/**

 * Exception thrown when an error occurs in a configuration administrative

 * class

 */

public class HandlerException extends Exception {

	private static final long serialVersionUID = 7997030775672963304L;

	/**

	 * Create a new AdminException.

	 *

	 * @param message The error or warning message.

	 */

	public HandlerException(String message) {

		super(message);

	}

}

/**

 *  '$RCSfile$'

 *    Purpose: A class represent a connection object, it includes connction 

 *    itself, index, status, age and usageCount.

 *  Copyright: 2000 Regents of the University of California and the

 *             National Center for Ecological Analysis and Synthesis

 *    Authors: Jing Tao

 *

 *   '$Author$'

 *     '$Date$'

 * '$Revision$'

 *

 * This program is free software; you can redistribute it and/or modify

 * it under the terms of the GNU General Public License as published by

 * the Free Software Foundation; either version 2 of the License, or

 * (at your option) any later version.

 *

 * This program is distributed in the hope that it will be useful,

 * but WITHOUT ANY WARRANTY; without even the implied warranty of

 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the

 * GNU General Public License for more details.

 *

 * You should have received a copy of the GNU General Public License

 * along with this program; if not, write to the Free Software

 * Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA  02111-1307  USA

 */

package edu.ucsb.nceas.metacat;

import java.io.*;

import java.sql.*;

import org.apache.log4j.Logger;

import edu.ucsb.nceas.metacat.service.PropertyService;

import edu.ucsb.nceas.utilities.PropertyNotFoundException;

/**

 * A class represent a connection object, it includes connection itself, 

 * index, status, age, createtime, connection time, usageCount, warning message

 */

public class DBConnection 

{

  private Connection conn;

  private String tag;//to idenify this object

  private int status;// free or using

  private long age;

  private long createTime;

  private long connectionTime; //how long it use for connections, 

                               //it is accumulated

  private long checkOutTime; //the time when check it out

  private int usageCount;// how many time the connection was used

  private int checkOutSerialNumber; // a number to identify same check out.

                                     //for a connection

  private SQLWarning warningMessage;

  private String checkOutMethodName;

  private static String  DBDriver;

  private static String  DBConnectedJDBC;

  private static String  userName;

  private static String  passWord;

  private static Logger logMetacat = Logger.getLogger(DBConnection.class);

  /**

   * Default constructor of the DBConnection class 

   * 

   */

  public DBConnection()  throws SQLException

  {

	try {

		DBDriver = PropertyService.getProperty("database.driver");

		DBConnectedJDBC = PropertyService.getProperty("database.connectionURI");

		userName = PropertyService.getProperty("database.user");

		passWord = PropertyService.getProperty("database.password");

	} catch (PropertyNotFoundException pnfe) {

		System.err.println("Could not get property in static block: "

			+ pnfe.getMessage());

	}

    conn = openConnection();

    tag = conn.toString();

    status = 0;

    age = 0;

    createTime = System.currentTimeMillis();

    connectionTime = 0;

    checkOutTime = 0;

    usageCount= 0;

    checkOutSerialNumber=0;

    warningMessage = null;

    checkOutMethodName = null;

  }

  /**

   * get the  connetion from the object

   */

  public Connection getConnections()

  {

    return conn;

  }

  /**

   * Set a connection to this object

   * @param myDBConnection, the connection which will be assign to this object

   */

  public void setConnections( Connection myConnection)

  {

    this.conn = myConnection;

  }

  /**

   * get the db connetion tag from the object

   */

  public String getTag()

  {

    return tag;

  }

  /**

   * Set a connection status to this object

   * @param myTag, the tag which will be assign to this object

   */

  public void setTag(String myTag)

  {

    this.tag = myTag;

  }

  /**

   * get the db connetion status from the object

   */

  public int getStatus()

  {

    return status;

  }

  /**

   * Set a connection status to this object

   * @param myStatus, the status which will be assign to this object

   * 0 is free, 1 is using

   */

  public void setStatus(int myStatus)

  {

    this.status = myStatus;

  }

  /**

   * get the db connetion age from the object

   */

  public long getAge()

  {

    return (System.currentTimeMillis() - createTime);

  }

  /**

   * Set a connection age to this object

   * @param myAge, the Age which will be assign to this object

   */

  public void setAge(long myAge)

  {

    this.age = myAge;

  }  

  /**

   * get the db connetion created time from the object

   */

  public long getCreateTime()

  {

    return createTime;

  }

  /**

   * Set a usage number to this object

   * @param myCreateTime, the create time which will be assign to this object

   */

  public void setCreateTime(long myCreateTime)

  {

    this.createTime = myCreateTime;

  }

  /**

   * get the how long db connetion used for the object

   */

  public long getConnectionTime()

  {

    return connectionTime;

  }

  /**

   * Set a connection time to this object

   * It is accumulated

   * @param myConnectionTime, the connection time which will assign to

   * this object

   */

  public void setConnectionTime(long myConnectionTime)

  {

    this.connectionTime = this.connectionTime + myConnectionTime;

  }

  /**

   * get the when a db connetion was checked out

   */

  public long getCheckOutTime()

  {

    return checkOutTime;

  }

  /**

   * Set check out time to this object

   * @param myCheckOutTime, the check out time which will assign to

   * this object

   */

  public void setCheckOutTime(long myCheckOutTime)

  {

    this.checkOutTime = myCheckOutTime;

  }

  /**

   * get the db connetion usage times from the object

   */

  public int getUsageCount()

  {

    return usageCount;

  }

  /**

   * Set a usage number to this object

   * @param myUsageCount, number of usage which will be assign to this object

   */

  public void setUsageCount(int myUsageCount)

  {

    this.usageCount = myUsageCount;

  }

  /**

   * Increase a usage number to this object

   * @param myUsageCount, number of usage which will be add to this object

   */

  public void increaseUsageCount(int myUsageCount)

  {

    this.usageCount = this.usageCount + myUsageCount;

  }  

  /**

   * get the check out serial number

   */

  public int getCheckOutSerialNumber()

  {

    return checkOutSerialNumber;

  }

  /**

   * Set check out serial number to this object

   * @param myCheckOutSerialNumber, the check out serial number which will 

   * assign to this object

   */

  public void setCheckOutSerialNumber(int myCheckOutSerialNumber)

  {

    this.checkOutSerialNumber = myCheckOutSerialNumber;

  }

  /**

   * Increase a usage number to this object

   * @param myUsageCount, number of usage which will be add to this object

   */

  public void increaseCheckOutSerialNumber(int myCheckOutSerialNumber)

  {

    this.checkOutSerialNumber=this.checkOutSerialNumber+myCheckOutSerialNumber;

  }  

  /**

   * get the db connetion waring message from the object

   */

  public SQLWarning getWarningMessage() throws SQLException

  {

    //should increase 1 UsageCount

    increaseUsageCount(1);

    return conn.getWarnings();

  }

  /**

   * Set a warning message to this object

   * @param myWarningMessage, the waring which will be assign to this object

   */

  public void setWarningMessage(SQLWarning myWarningMessage)

  {

     this.warningMessage = myWarningMessage;

  }

  /**

   * get the the name of method checked out the connection from the object

   */

  public String getCheckOutMethodName()

  {

    return checkOutMethodName;

  }

  /**

   * Set a method name to the checkOutMethodName 

   * @param myCheckOutMethodName, the name of method will assinged to it

   */

  public void setCheckOutMethodName(String myCheckOutMethodName)

  {

     this.checkOutMethodName = myCheckOutMethodName;

  }

  /**

   * Close a DBConnection object

   */

  public void close() throws SQLException

  {

    conn.close();

    tag = null;

    status = 0;

    age = 0;

    createTime = System.currentTimeMillis();

    connectionTime = 0;

    checkOutTime = 0;

    usageCount= 0;

    warningMessage = null;

  }

    /** 

   * Method to establish DBConnection 

   */

  public static Connection openConnection()

                  throws SQLException