Metacat

import java.util.regex.Matcher;

import java.util.regex.Pattern;

import edu.ucsb.nceas.metacat.service.PropertyService;

import edu.ucsb.nceas.metacat.service.XMLSchema;

import edu.ucsb.nceas.metacat.service.XMLSchemaService;

import edu.ucsb.nceas.metacat.spatial.SpatialHarvester;

import edu.ucsb.nceas.metacat.util.AuthUtil;

import edu.ucsb.nceas.metacat.util.MetacatUtil;

import edu.ucsb.nceas.metacat.util.SystemUtil;

import edu.ucsb.nceas.utilities.FileUtil;

import edu.ucsb.nceas.utilities.PropertyNotFoundException;

import edu.ucsb.nceas.utilities.StringUtil;

    private TreeSet<NodeRecord> nodeRecordList = null;

    private static Logger logMetacat = Logger.getLogger(DocumentImpl.class);

    /**

     * Default constructor

         {

           logMetacat.error("Local rev for docid "+ docid + " could not "+

                                  " be found because " + e.getMessage());

                   "written because error happend to find it's local revision");

           throw new Exception (e.getMessage());

         }

            //saying that he/she needs to download a new copy of the file and

            //merge the differences manually.

                    .getServerNameForServerCode(serverCode);

            URL u = new URL("https://" + server + "?server="

                    + MetacatUtil.getLocalReplicationServerName()

                    + "&action=getlock&updaterev=" + rev + "&docid=" + docid);

            //System.out.println("sending message: " + u.toString());

            String openingtag = serverResStr.substring(0, serverResStr

                    .indexOf(">") + 1);

            if (openingtag.equals("<lockgranted>")) {

                //the lock was granted go ahead with the insert

                //System.out.println("In lockgranted");

                        + " from " + server);

                flag = true;

                return flag;

                // and try

                //again.

                //System.out.println("file locked");

                        + server + " reason: file already locked");

                throw new Exception(

                        "The file specified is already locked by another "

                                                             // copy of the

                //file and merge his version with the new version.

                //System.out.println("outdated file");

                        + server + " reason: local file outdated");

                throw new Exception(

                        "The file you are trying to update is an outdated"

            //DocumentIdentifier id = new DocumentIdentifier(accnum);

            int revision = MetacatUtil.getRevisionFromAccessionNumber(accnum);

            String updaterev = (new Integer(revision)).toString();

                    .getServerNameForServerCode(serverCode);

            URL u = new URL("https://" + server + "?server="

                    + MetacatUtil.getLocalReplicationServerName()

                    + "&action=getlock&updaterev=" + updaterev + "&docid="

                    + docid);

            //System.out.println("sending message: " + u.toString());

            String openingtag = serverResStr.substring(0, serverResStr

                    .indexOf(">") + 1);

            if (openingtag.equals("<lockgranted>")) {//the lock was granted go

                XMLReader parser = null;

                try {

                    //System.out.println("In lockgranted");

                            + " from " + server);

                    /*

                     * XMLReader parser = initializeParser(conn, action, docid,

                // the file is currently locked by another user notify our

                // user to wait a few minutes, check out a new copy and try

                // again.

                        + server + " reason: file already locked");

                throw new Exception(

                        "The file specified is already locked by another "

                // our file is outdated. notify our user to check out a new

                // copy of the file and merge his version with the new version.

                //System.out.println("outdated file");

                        + server + " reason: local file outdated");

                throw new Exception(

                        "The file you are trying to update is an outdated"

                // we need to delete the nodes in xml_ndoes.

                deleteXMLNodes(conn, rootId);

            }

                    + "rule for package: " + accnum + " because "

                    + ee.getMessage());

            logMetacat.error("Failed to  " + "create access "