Metacat

Reformat file. No code change.

do a quick retry if building path index fails with a SQL error

Make sure buildIndex throws an exception if it has a sqlexception. That way the indexing object will be added to the indexing queue and reprocessed.

Pass the doc xml as a string to docImpl.write and writeRepication. This is so a reader can be create for the parsing and for the write to disk. Also created a db access class for xml query result deletion.

Add comments

make constants final

Fix the bug of http://bugzilla.ecoinformatics.org/show_bug.cgi?id=4645. handleGetRevisionAndDocTypeAction will search both xml_documents and xml_revisions table.
It also changed some constrain in AccessionNumber when user update a document, of which all previous versions are in xml_revisions table.

Add a sleep statement between getting the dtd from source and checking for it via url. Add method names to log output.

Log doc and rev query counts and times. Fix mis-spellings.

Log doc and rev query counts and times. Fix mis-spellings.