Metacat

# Set this to the location of the metacat application context

# directory.  The tests will use this to find metacat.properties

#metacat.contextDir=/usr/share/tomcat5.5/webapps/knb

######## Configuration utility section  ################

############### Server Values #################

server.httpPort=80

server.httpSSLPort=443

############### Application Values ############

## one of the few places where we use ANT tokens

application.metacatReleaseInfo=@metacatReleaseInfo@

## This is autodiscovered and populated by the config utility

application.default-style=default

application.knbSiteURL=http://knb.ecoinformatics.org

application.datafilepath=/var/metacat/data

application.inlinedatafilepath=/var/metacat/inline-data

application.documentfilepath=/var/metacat/documents

############### Database Values ###############

database.connectionURI=jdbc:postgresql://localhost/metacat

database.scriptsuffix.postgres=postgres.sql

database.scriptsuffix.oracle=oracle.sql

database.scriptsuffix.sqlserver=sqlserver.sql

## auth.class=edu.ucsb.nceas.metacat.AuthStub

auth.timeoutMinutes=180

# auth.administrators=uid=jones,o=NCEAS,dc=ecoinformatics,dc=org

auth.url=ldap://ldap.ecoinformatics.org:389/

auth.surl=ldap://ldap.ecoinformatics.org:389/

auth.base=dc=ecoinformatics,dc=org

ldap.referral=follow

ldap.onlySecureConnection=false

ldap.onlySecureReferalsConnection=false

ldap.templates.stage=initregister

ldap.templates.header=genericHeader.tmpl

ldap.templates.footer=genericFooter.tmpl

xml.entitydoctype=-//ecoinformatics.org//eml-entity-2.0.0beta6//EN, -//ecoinformatics.org//eml-entity-2.0.0beta4//EN

xml.packagedoctypeset=BIN,-//ecoinformatics.org//eml-access-2.0.0beta6//EN,-//ecoinformatics.org//eml-access-2.0.0beta4//EN,-//ecoinformatics.org//eml-attribute-2.0.0beta6//EN,-//ecoinformatics.org//eml-attribute-2.0.0beta4//EN,-//ecoinformatics.org//eml-constraint-2.0.0beta6//EN,-//ecoinformatics.org//eml-constraint-2.0.0beta4//EN,-//ecoinformatics.org//eml-coverage-2.0.0beta6//EN,-//ecoinformatics.org//eml-coverage-2.0.0beta4//EN,-//ecoinformatics.org//eml-dataset-2.0.0beta6//EN,-//ecoinformatics.org//eml-dataset-2.0.0beta4//EN,-//ecoinformatics.org//eml-entity-2.0.0beta6//EN,-//ecoinformatics.org//eml-entity-2.0.0beta4//EN,-//ecoinformatics.org//eml-literature-2.0.0beta6//EN,-//ecoinformatics.org//eml-literature-2.0.0beta4//EN,-//ecoinformatics.org//eml-physical-2.0.0beta6//EN,-//ecoinformatics.org//eml-physical-2.0.0beta4//EN,-//ecoinformatics.org//eml-project-2.0.0beta6//EN,-//ecoinformatics.org//eml-project-2.0.0beta4//EN,-//ecoinformatics.org//eml-protocol-2.0.0beta6//EN,-//ecoinformatics.org//eml-protocol-2.0.0beta4//EN,-//ecoinformatics.org//eml-software-2.0.0beta6//EN,-//ecoinformatics.org//eml-software-2.0.0beta4//EN

xml.indexNamespaces=eml://ecoinformatics.org/eml-2.0.0,eml://ecoinformatics.org/eml-2.0.1,eml://ecoinformatics.org/eml-2.1.0

######## Outgoing email  #########################################

######## Replication properties  #########################################

## deltaT=60

## debuglevel=55

replication.datafileflag=datafile

harvester.connectToMetacat=true

harvester.delay=0

harvester.logPeriod=90

harvester.maxHarvests=0

harvester.GetDocError=Error getting EML document from site,Error

harvester.GetDocSuccess=Success getting EML document from site,Debug

harvester.GetHarvestListError=Error getting harvest list from site,Error

######## Spatial section              #########################################

spatial.runSpatialOption=true

# Comma-seperated list of schemas containing spatial bounding boxes

# name corresponds to the docname stored in xml_documents table

spatial.spatialDocnameList=eml,fgdc,metadata

test.metacatUrl=http://indus.msi.ucsb.edu/knb/metacat

test.contextUrl=http://indus.msi.ucsb.edu/knb

test.workflowSchedulerUrl=http://indus.msi.ucsb.edu/workflowscheduler/scheduler

test.mcUser=uid=kepler,o=unaffiliated,dc=ecoinformatics,dc=org

test.mcPassword=kepler

test.mcAnotherUser=uid=test,o=NCEAS,dc=ecoinformatics,dc=org

######## Developers Section #########################################

# you through the configuration.

dev.runConfiguration=true

        try {

            out = response.getOutputStream();

            if(guid != null)

                Identifier id = new Identifier();

                id.setValue(guid);

                try

                {

                    InputStream data = cs.get(token, id);

                    IOUtils.copyLarge(data, response.getOutputStream());

                }

            AuthToken token = new AuthToken(sessionid);

            EventLog.getInstance().log(metacatUrl,

                    username, null, "authenticate");

            return token;

        }

        catch(Exception e)

            InputStream object, SystemMetadata sysmeta) throws InvalidToken, 

            ServiceFailure, NotAuthorized, IdentifierNotUnique, UnsupportedType, 

            InsufficientResources, InvalidSystemMetadata, NotImplemented {

        logMetacat.debug("Starting CrudService.create()...");

        // authenticate & get user info

        SessionData sessionData = getSessionData(token);

        String username = "public";

        logMetacat.debug("Checking if identifier exists...");

        // Check that the identifier does not already exist

        if (im.identifierExists(guid.getValue())) {

            throw new IdentifierNotUnique("1120", 

                "GUID is already in use by an existing object.");

        }

        // For Metadata and Data, insert the system metadata into the object store too

        logMetacat.debug("Returning from CrudService.create()");

        EventLog.getInstance().log(metacatUrl,

                username, localId, "create");

        return guid;

    }

            //change the obsoletes field of the new systemMetadata (sm.new) to point to the id of the old one

            sysmeta.addObsolete(obsoletedGuid);

            //insert sm.new

            boolean isScienceMetadata = isScienceMetadata(sysmeta);

            if(isScienceMetadata)

            }

            EventLog.getInstance().log(metacatUrl,

                    username, im.getLocalId(guid.getValue()), "update");

            return guid;

        }

        catch(Exception e)

        // Retrieve the session information from the AuthToken

        // If the session is expired, then the user is 'public'

        final SessionData sessionData = getSessionData(token);

        // Look up the localId for this global identifier

            EventLog.getInstance().log(metacatUrl,

                    username, im.getLocalId(guid.getValue()), "read");

            return objectStream;

        } catch (McdbDocNotFoundException e) {

            }

            EventLog.getInstance().log(metacatUrl,

                    username, im.getLocalId(guid.getValue()), "read");

            return sysmeta;

        } catch (McdbDocNotFoundException e) {

    /**

     * insert a systemMetadata doc

     */

        throws ServiceFailure 

    {

        logMetacat.debug("Starting to insert SystemMetadata...");

        //link it to the data or metadata document

        IdentifierManager.getInstance().createSystemMetadataMapping(

                sysmeta.getIdentifier().getValue(), sysMetaGuid.getValue());

    }

    /**

# Tomcat dev deployment directory

# build.tomcat.dir=/usr/local/tomcat

# The Maven2 installation directory, for building the dataone-service-api

# Maven is available here: http://maven.apache.org/

# install ant target uses this to determine where to drop 

# the war file in an installation.  Test classes will use

# this value to find metacat.properties

# CVS access to retrieve latest EML, seek and utilities 

cvsroot=:ext:${env.USER}@cvs.ecoinformatics.org:/cvs