Project

General

Profile

1
<%@ page language="java"%>
2
<%
3
/**
4
 * 
5
 * '$RCSfile$'
6
 * Copyright: 2008 Regents of the University of California and the
7
 *             National Center for Ecological Analysis and Synthesis
8
 *    '$Author: leinfelder $'
9
 *      '$Date: 2010-08-30 16:34:14 -0700 (Mon, 30 Aug 2010) $'
10
 * '$Revision: 5533 $'
11
 * 
12
 * This program is free software; you can redistribute it and/or modify
13
 * it under the terms of the GNU General Public License as published by
14
 * the Free Software Foundation; either version 2 of the License, or
15
 * (at your option) any later version.
16
 * 
17
 * This program is distributed in the hope that it will be useful,
18
 * but WITHOUT ANY WARRANTY; without even the implied warranty of
19
 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
20
 * GNU General Public License for more details.
21
     
22
 * You should have received a copy of the GNU General Public License
23
 * along with this program; if not, write to the Free Software
24
 *  Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA  02111-1307  USA
25
 */  
26
%>
27

    
28
<%@ include file="../../common/common-settings.jsp"%>
29
<%@ include file="../../common/configure-check.jsp"%>
30
<html>
31
<head>
32
<title>Semantic search</title>
33
<link rel="stylesheet" type="text/css" href="<%=STYLE_SKINS_URL%>/semtools/semtools.css">
34
<script type="text/javascript"
35
	src="<%=STYLE_SKINS_URL%>/semtools/search.js"></script>
36

    
37
<script type="text/javascript">
38
                    	    // Set defaults for this installation
39
                    	    //var BP_SEARCH_SERVER = "http://oor-01.cim3.net";
40
                    	    //var BP_SITE = "Sandbox";
41
                    	    //var BP_ORG = "OOR";
42
                    	  </script>
43
<script language="Javascript" type="text/JavaScript"
44
	src="<%=STYLE_SKINS_URL%>/semtools/bioportal/form_complete.js">
45
</script>
46

    
47
<script language="javascript" type="text/javascript" src="<%=STYLE_SKINS_URL%>/semtools/semtools.js"></script>
48
<script language="javascript" type="text/javascript" src="<%=STYLE_COMMON_URL%>/branding.js"></script>
49

    
50
</head>
51
<body>
52
<script language="javascript">
53
	insertTemplateOpening("<%=CONTEXT_URL%>");
54
</script>
55

    
56
<h2>Annotation-based search</h2>
57

    
58
<form method="POST" action="<%=SERVLET_URL%>" target="_top" id="searchForm" name="searchForm" onSubmit="return checkSearch(this)">
59
	<input name="query" type="hidden" />
60
	<input name="qformat" value="semtools" type="hidden" />
61
	<input name="action" value="semquery" type="hidden" />
62

    
63
	<table>
64
		<tr>
65
			<td>
66
				<select name="dynamicClass" id="dynamicClass">
67
					<option value="http://ecoinformatics.org/oboe/oboe.1.0/oboe-core.owl#Entity" selected="selected">Entity</option>
68
					<option value="http://ecoinformatics.org/oboe/oboe.1.0/oboe-core.owl#Characteristic">Characteristic</option>
69
					<option value="http://ecoinformatics.org/oboe/oboe.1.0/oboe-core.owl#Standard">Standard</option>
70
					<option value="http://ecoinformatics.org/oboe/oboe.1.0/oboe-core.owl#Protocol">Protocol</option>
71
					<option value="http://ecoinformatics.org/oboe/oboe.1.0/oboe-core.owl#Measurement">Measurement</option>
72
				</select>
73
			</td>
74
			<td><input type="text" name="dynamicValue" id="dynamicValue" class="bp_form_complete-all-uri" size="100" /></td>
75
		</tr>
76
		<tr>
77
			<td>
78
				<select name="dynamicClass" id="dynamicClass">
79
					<option value="http://ecoinformatics.org/oboe/oboe.1.0/oboe-core.owl#Entity">Entity</option>
80
					<option value="http://ecoinformatics.org/oboe/oboe.1.0/oboe-core.owl#Characteristic" selected="selected">Characteristic</option>
81
					<option value="http://ecoinformatics.org/oboe/oboe.1.0/oboe-core.owl#Standard">Standard</option>
82
					<option value="http://ecoinformatics.org/oboe/oboe.1.0/oboe-core.owl#Protocol">Protocol</option>
83
					<option value="http://ecoinformatics.org/oboe/oboe.1.0/oboe-core.owl#Measurement">Measurement</option>
84
				</select>
85
			</td>
86
			<td><input type="text" name="dynamicValue" id="dynamicValue" class="bp_form_complete-all-uri" size="100" /></td>
87
		</tr>
88
		<tr>
89
			<td>
90
				<select name="dynamicClass" id="dynamicClass">
91
					<option value="http://ecoinformatics.org/oboe/oboe.1.0/oboe-core.owl#Entity">Entity</option>
92
					<option value="http://ecoinformatics.org/oboe/oboe.1.0/oboe-core.owl#Characteristic">Characteristic</option>
93
					<option value="http://ecoinformatics.org/oboe/oboe.1.0/oboe-core.owl#Standard" selected="selected">Standard</option>
94
					<option value="http://ecoinformatics.org/oboe/oboe.1.0/oboe-core.owl#Protocol">Protocol</option>
95
					<option value="http://ecoinformatics.org/oboe/oboe.1.0/oboe-core.owl#Measurement">Measurement</option>
96
				</select>
97
			</td>
98
			<td><input type="text" name="dynamicValue" id="dynamicValue" class="bp_form_complete-all-uri" size="100" /></td>
99
		</tr>
100
		<tr>
101
			<td>
102
				<select name="dynamicClass" id="dynamicClass">
103
					<option value="http://ecoinformatics.org/oboe/oboe.1.0/oboe-core.owl#Entity">Entity</option>
104
					<option value="http://ecoinformatics.org/oboe/oboe.1.0/oboe-core.owl#Characteristic">Characteristic</option>
105
					<option value="http://ecoinformatics.org/oboe/oboe.1.0/oboe-core.owl#Standard">Standard</option>
106
					<option value="http://ecoinformatics.org/oboe/oboe.1.0/oboe-core.owl#Protocol" selected="selected">Protocol</option>
107
					<option value="http://ecoinformatics.org/oboe/oboe.1.0/oboe-core.owl#Measurement">Measurement</option>
108
				</select>
109
			</td>
110
			<td><input type="text" name="dynamicValue" id="dynamicValue" class="bp_form_complete-all-uri" size="100" /></td>
111
		</tr>
112
		<tr>
113
			<td>
114
				<select name="dynamicClass" id="dynamicClass">
115
					<option value="http://ecoinformatics.org/oboe/oboe.1.0/oboe-core.owl#Entity">Entity</option>
116
					<option value="http://ecoinformatics.org/oboe/oboe.1.0/oboe-core.owl#Characteristic">Characteristic</option>
117
					<option value="http://ecoinformatics.org/oboe/oboe.1.0/oboe-core.owl#Standard">Standard</option>
118
					<option value="http://ecoinformatics.org/oboe/oboe.1.0/oboe-core.owl#Protocol">Protocol</option>
119
					<option value="http://ecoinformatics.org/oboe/oboe.1.0/oboe-core.owl#Measurement" selected="selected">Measurement</option>
120
				</select>
121
			</td>
122
			<td><input type="text" name="dynamicValue" id="dynamicValue" class="bp_form_complete-all-uri" size="100" /></td>
123
		</tr>
124
		<!-- 
125
		<tr>
126
			<td>Entity: (SBC only)</td>
127
			<td><input type="text" name="entity" class="bp_form_complete-1523-uri" size="100" /></td>
128
		</tr>
129
		 -->
130
		<tr>
131
			<td colspan="2">Match All? <input type="checkbox" name="matchAll" checked="checked"/></td>
132
		</tr>
133
		<tr>
134
			<td colspan="2">From same Observation? <input type="checkbox" name="strict"/></td>
135
		</tr>
136
		<tr>
137
			<td colspan="2"><input type="submit" value="Search"/></td>
138
		</tr>
139
	</table>
140
</form>
141

    
142
<h2>Ontology search</h2>
143
<div id="bp_quick_jump"></div>
144
<script type="text/javascript">
145
    var BP_ontology_id = "all";
146
</script>
147
<script src="<%=STYLE_SKINS_URL%>/semtools/bioportal/quick_jump.js" type="text/javascript" charset="utf-8">
148
</script>
149

    
150
<h2>Tree browser</h2>
151

    
152
<object classid="clsid:D27CDB6E-AE6D-11cf-96B8-444553540000"
153
	id="OntologyTree" width="300" height="100%"
154
	codebase="http://fpdownload.macromedia.com/get/flashplayer/current/swflash.cab">
155
	<param name="movie" value="http://keg.cs.uvic.ca/ncbo/ontologytree/OntologyTree.swf" />
156
	<param name="quality" value="high" />
157
	<param name="bgcolor" value="#ffffff" />
158
	<param name="allowScriptAccess" value="always" />
159
	<param name="flashVars" value="ontology=1523&alerterrors=false&canchangeontology=false&virtual=true" />
160
	<embed src="http://keg.cs.uvic.ca/ncbo/ontologytree/OntologyTree.swf" quality="high" bgcolor="#ffffff"
161
		width="300" height="100%" name="OntologyTree" align="middle"
162
		play="true"
163
		loop="false"
164
		allowScriptAccess="always"
165
		type="application/x-shockwave-flash"
166
		flashVars="ontology=1523&alerterrors=false&canchangeontology=false&virtual=true"
167
		pluginspage="http://www.adobe.com/go/getflashplayer">
168
	</embed>
169
</object>
170

    
171
<!-- Included default search/login -->
172
<% if ( PropertyService.getProperty("spatial.runSpatialOption").equals("true") ) { %>
173
<script language="javascript">
174
	insertMap("<%=CONTEXT_URL%>");
175
</script>
176
<br/>
177
<% } %>
178
  
179
<script language="javascript">
180
	insertSearchBox("<%=CONTEXT_URL%>");
181
	insertLoginBox("<%=CONTEXT_URL%>");	
182
</script>
183

    
184
<script language="javascript">
185
	insertTemplateClosing("<%=CONTEXT_URL%>");
186
</script>
187

    
188
</body>
189
</html>
(10-10/21)