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Revision 5578

Added by ben leinfelder over 14 years ago

only show that an annotation exists in the resultset, not the full details

View differences:

lib/style/skins/semtools/annotation.xsl
56 56 
					insertTemplateOpening('<xsl:value-of select="$contextURL" />'); insertSearchBox('<xsl:value-of select="$contextURL" />');
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				</script>
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				<div id="content_wrapper">
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				<xsl:for-each select="/*[local-name()='annotation']">
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					<xsl:call-template name="annotation"/>
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				</xsl:for-each>
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				</div>
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				<script language="JavaScript">
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					insertTemplateClosing('<xsl:value-of select="$contextURL" />');
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				</script>
lib/style/skins/semtools/resultset.xsl
113 113 
	<xsl:template name="emlResults">
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		<table align="center" border="0" cellpadding="5" cellspacing="0" width="100%">
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			<tr class="subpanel">
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				<th class="tablehead" colspan="4">
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					Datapackages
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				</th>
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			</tr>
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			<tr class="subpanel">
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				<th	style="text-align: left">
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					Title
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				</th>
......
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				<tr>
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					<td colspan="5">
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						<xsl:for-each select="./*[local-name()='annotation']">
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							<xsl:call-template name="annotation" />
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							<xsl:call-template name="annotation">
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								 <xsl:with-param name="showAll" select="false"/>
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							</xsl:call-template>
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						</xsl:for-each>
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					</td>
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				</tr>
......
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	<xsl:template name="annotationResults">
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		<table align="left" border="0" cellpadding="5" cellspacing="0" width="100%">
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			<tr>
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				<th class="tablehead" colspan="3">
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					Annotations
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				</th>
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			</tr>
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			<tr class="subpanel">
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				<th	style="text-align: left">
lib/style/skins/semtools/annotation-root.xsl
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	<xsl:key name="mapping" match="//*[local-name()='map']" use="@measurement" />
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	<xsl:template name="annotation">
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		<xsl:param name="showAll">true</xsl:param>
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		<table align="center" border="0" cellpadding="5" cellspacing="0" width="100%">
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			<tr>
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				<th class="tablehead" colspan="2">
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					Annotation
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				</th>
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			</tr>
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			<tr class="subpanel">
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				<th	style="text-align: left" colspan="2">Details</th>
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				<th	style="text-align: left" colspan="2">Annotation</th>
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			</tr>
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			<tr class="subpanel">
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				<td class="text_plain" colspan="2">
......
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			     	</table>
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				</td>
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			</tr>
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			<tr class="subpanel">
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				<th	style="text-align: left">
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					Entity
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				</th>
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				<th	style="text-align: left">
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					Measurement
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				</th>
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			<xsl:if test="$showAll='true'">
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				<tr class="subpanel">
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					<th	style="text-align: left">
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						Entity
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					</th>
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					<th	style="text-align: left">
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						Measurement
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					</th>
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				</tr>
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				<xsl:for-each select="./*[local-name()='observation']">
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					<tr valign="top" class="subpanel">
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						<xsl:attribute name="class">
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		              			<xsl:choose>
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							    <xsl:when test="position() mod 2 = 1">rowodd</xsl:when>
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							    <xsl:when test="position() mod 2 = 0">roweven</xsl:when>
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							</xsl:choose>
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						</xsl:attribute>
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						<!-- observation entity -->
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						<td class="text_plain">
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							Class: <xsl:value-of select="substring-after(./*[local-name()='entity']/@id, ':')"/>
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							<br/>
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							Ontology: <xsl:value-of select="fn:namespace-uri-for-prefix(substring-before(./*[local-name()='entity']/@id, ':'), .)"/>
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							<br />
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							Label: <xsl:value-of select="./@label"/>
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						</td>
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						<!-- measurement -->
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						<td class="text_plain">
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							<xsl:for-each select="./*[local-name()='measurement']">
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								<table>
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									<tr>
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										<td class="text_plain">
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											Column:
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										</td>
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										<td class="text_plain">
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											<xsl:for-each select="key('mapping', @label)">
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												<xsl:value-of select="./@attribute" />
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											</xsl:for-each>
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										</td>
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										<td></td>
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									</tr>
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									<tr>
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										<td class="text_plain">
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											Characteristic[s]:
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										</td>
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										<td class="text_plain">
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											<xsl:for-each select="./*[local-name()='characteristic']">
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												<!--xsl:value-of select="./@id" /-->
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												<xsl:value-of select="substring-after(./@id, ':')"/>
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											</xsl:for-each>
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										</td>
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										<td class="text_plain">
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											<xsl:for-each select="./*[local-name()='characteristic']">
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												<xsl:value-of select="fn:namespace-uri-for-prefix(substring-before(./@id, ':'), .)"/>
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											</xsl:for-each>
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										</td>
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									</tr>
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									<tr>
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										<td class="text_plain">
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											Standard:
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										</td>
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										<td class="text_plain">
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											<!-- xsl:value-of select="./*[local-name()='standard']/@id" /-->
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											<xsl:value-of select="substring-after(./*[local-name()='standard']/@id, ':')"/>
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										</td>
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										<td class="text_plain">
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											<xsl:value-of select="fn:namespace-uri-for-prefix(substring-before(./*[local-name()='standard']/@id, ':'), .)"/>
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										</td>
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									</tr>
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									<tr>
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										<td class="text_plain">
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											Protocol:
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										</td>
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										<td class="text_plain">
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											<!-- xsl:value-of select="./*[local-name()='protocol']/@id" /-->
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											<xsl:value-of select="substring-after(./*[local-name()='protocol']/@id, ':')"/>
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										</td>
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										<td class="text_plain">
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											<xsl:value-of select="fn:namespace-uri-for-prefix(substring-before(./*[local-name()='protocol']/@id, ':'), .)"/>
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										</td>
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									</tr>
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								</table>
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								<hr/>
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							</xsl:for-each>
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						</td>
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					</tr>
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				</xsl:for-each>
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			</xsl:if>
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			<tr class="searchresultsdivider">
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				<td colspan="5">
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				</td>
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			</tr>
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			<xsl:for-each select="./*[local-name()='observation']">
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				<tr valign="top" class="subpanel">
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					<xsl:attribute name="class">
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	              			<xsl:choose>
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						    <xsl:when test="position() mod 2 = 1">rowodd</xsl:when>
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						    <xsl:when test="position() mod 2 = 0">roweven</xsl:when>
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						</xsl:choose>
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					</xsl:attribute>
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					<!-- observation entity -->
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					<td class="text_plain">
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						Class: <xsl:value-of select="substring-after(./*[local-name()='entity']/@id, ':')"/>
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						<br/>
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						Ontology: <xsl:value-of select="fn:namespace-uri-for-prefix(substring-before(./*[local-name()='entity']/@id, ':'), .)"/>
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						<br />
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						Label: <xsl:value-of select="./@label"/>
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					</td>
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					<!-- measurement -->
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					<td class="text_plain">
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						<xsl:for-each select="./*[local-name()='measurement']">
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							<table>
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								<tr>
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									<td class="text_plain">
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										Column:
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									</td>
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									<td class="text_plain">
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										<xsl:for-each select="key('mapping', @label)">
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											<xsl:value-of select="./@attribute" />
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										</xsl:for-each>
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									</td>
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									<td></td>
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								</tr>
151 
								<tr>
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									<td class="text_plain">
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										Characteristic[s]:
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									</td>
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									<td class="text_plain">
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										<xsl:for-each select="./*[local-name()='characteristic']">
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											<!--xsl:value-of select="./@id" /-->
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											<xsl:value-of select="substring-after(./@id, ':')"/>
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										</xsl:for-each>
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									</td>
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									<td class="text_plain">
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										<xsl:for-each select="./*[local-name()='characteristic']">
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											<xsl:value-of select="fn:namespace-uri-for-prefix(substring-before(./@id, ':'), .)"/>
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										</xsl:for-each>
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									</td>
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								</tr>
167 
								<tr>
168 
									<td class="text_plain">
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										Standard:
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									</td>
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									<td class="text_plain">
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										<!-- xsl:value-of select="./*[local-name()='standard']/@id" /-->
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										<xsl:value-of select="substring-after(./*[local-name()='standard']/@id, ':')"/>
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									</td>
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									<td class="text_plain">
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										<xsl:value-of select="fn:namespace-uri-for-prefix(substring-before(./*[local-name()='standard']/@id, ':'), .)"/>
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									</td>
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								</tr>
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								<tr>
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									<td class="text_plain">
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										Protocol:
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									</td>
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									<td class="text_plain">
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										<!-- xsl:value-of select="./*[local-name()='protocol']/@id" /-->
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										<xsl:value-of select="substring-after(./*[local-name()='protocol']/@id, ':')"/>
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									</td>
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									<td class="text_plain">
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										<xsl:value-of select="fn:namespace-uri-for-prefix(substring-before(./*[local-name()='protocol']/@id, ':'), .)"/>
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									</td>
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								</tr>
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							</table>
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							<hr/>
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						</xsl:for-each>
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					</td>
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				</tr>
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				<tr class="searchresultsdivider">
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					<td colspan="5">
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					</td>
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				</tr>
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			</xsl:for-each>
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		</table>
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	</xsl:template>
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