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<%@ page language="java"%>
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<%
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/**
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*
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* '$RCSfile$'
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* Copyright: 2008 Regents of the University of California and the
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* National Center for Ecological Analysis and Synthesis
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* '$Author: leinfelder $'
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* '$Date: 2010-10-07 11:51:32 -0700 (Thu, 07 Oct 2010) $'
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* '$Revision: 5602 $'
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*
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* This program is free software; you can redistribute it and/or modify
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* it under the terms of the GNU General Public License as published by
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* the Free Software Foundation; either version 2 of the License, or
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* (at your option) any later version.
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*
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* This program is distributed in the hope that it will be useful,
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* but WITHOUT ANY WARRANTY; without even the implied warranty of
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* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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* GNU General Public License for more details.
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* You should have received a copy of the GNU General Public License
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* along with this program; if not, write to the Free Software
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* Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
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*/
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%>
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<%@ include file="../../common/common-settings.jsp"%>
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<%@ include file="../../common/configure-check.jsp"%>
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<html>
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<head>
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<title>Semantic search</title>
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<link rel="stylesheet" type="text/css" href="<%=STYLE_SKINS_URL%>/semtools/semtools.css">
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<script type="text/javascript"
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src="<%=STYLE_SKINS_URL%>/semtools/search.js"></script>
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<script type="text/javascript">
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// Set defaults for this installation
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//var BP_SEARCH_SERVER = "http://oor-01.cim3.net";
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//var BP_SITE = "Sandbox";
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//var BP_ORG = "OOR";
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</script>
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<script language="Javascript" type="text/JavaScript"
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src="<%=STYLE_SKINS_URL%>/semtools/bioportal/form_complete.js">
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</script>
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<script language="javascript" type="text/javascript" src="<%=STYLE_SKINS_URL%>/semtools/semtools.js"></script>
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<script language="javascript" type="text/javascript" src="<%=STYLE_COMMON_URL%>/branding.js"></script>
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</head>
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<body>
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<script language="javascript">
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insertTemplateOpening("<%=CONTEXT_URL%>");
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</script>
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<div id="content_wrapper">
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<h2>Annotation-based search</h2>
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<form method="POST" action="<%=SERVLET_URL%>" target="_top" id="searchForm" name="searchForm" onSubmit="return checkSearch(this)">
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<input name="query" type="hidden" />
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<input name="qformat" value="semtools" type="hidden" />
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<input name="action" value="semquery" type="hidden" />
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<table class="group group_border">
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<tr>
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<th colspan="5">
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<p>
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Locate <b>data packages</b> that have been semantically annotated within the observation model by
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selecting concepts from
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<br/>
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(a) existing semantic annotations
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<br/>
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(b) registered OBOE extension ontologies
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</p>
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</th>
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</tr>
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<tr>
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<td>
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<table class="subGroup subGroup_border">
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<tr>
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<th colspan="1">
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Entity
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</th>
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</tr>
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<tr>
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<td>Find observations of</td>
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</tr>
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<tr>
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<td>
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(a)
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<select name="dynamicValue" id="dynamicValue" multiple="multiple" size="5" style="width: 216px">
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<option title="A long description for Kelp">Kelp</option>
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<option>Tree</option>
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</select>
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<input type="hidden" name="dynamicClass" id="dynamicClass" value="http://ecoinformatics.org/oboe/oboe.1.0/oboe-core.owl#Entity"/>
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</td>
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</tr>
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<tr>
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<td colspan="1">
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(b)
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<input type="text" name="dynamicValue" id="dynamicValue" class="bp_form_complete-all-uri" size="30" />
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<input type="hidden" name="dynamicClass" id="dynamicClass" value="http://ecoinformatics.org/oboe/oboe.1.0/oboe-core.owl#Entity"/>
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</td>
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</tr>
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</table>
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</td>
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<td>
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<table class="subGroup subGroup_border">
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<tr>
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<th colspan="1">
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Characteristic
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</th>
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</tr>
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<tr>
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<td>where measurements of</td>
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</tr>
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<tr>
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<td>
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<select name="dynamicValue" id="dynamicValue" multiple="multiple" size="5" style="width: 216px">
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<option title="A long description for Height">Height</option>
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<option>Weight</option>
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</select>
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<input type="hidden" name="dynamicClass" id="dynamicClass" value="http://ecoinformatics.org/oboe/oboe.1.0/oboe-core.owl#Characteristic"/>
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</td>
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</tr>
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<tr>
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<td colspan="1">
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<input type="text" name="dynamicValue" id="dynamicValue" class="bp_form_complete-all-uri" size="30" />
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<input type="hidden" name="dynamicClass" id="dynamicClass" value="http://ecoinformatics.org/oboe/oboe.1.0/oboe-core.owl#Characteristic"/>
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</td>
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</tr>
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</table>
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</td>
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<td>
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<table class="subGroup subGroup_border">
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<tr>
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<th colspan="1">
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Standard
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</th>
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</tr>
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<tr>
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<td>were recorded in units of</td>
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</tr>
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<tr>
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<td>
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<select name="dynamicValue" id="dynamicValue" multiple="multiple" size="5" style="width: 216px">
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<option title="A long description for Meter">Meter</option>
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<option>Inch</option>
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<option>Gram</option>
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</select>
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<input type="hidden" name="dynamicClass" id="dynamicClass" value="http://ecoinformatics.org/oboe/oboe.1.0/oboe-core.owl#Standard"/>
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</td>
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</tr>
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<tr>
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<td colspan="1">
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<input type="text" name="dynamicValue" id="dynamicValue" class="bp_form_complete-all-uri" size="30" />
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<input type="hidden" name="dynamicClass" id="dynamicClass" value="http://ecoinformatics.org/oboe/oboe.1.0/oboe-core.owl#Standard"/>
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</td>
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</tr>
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</table>
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</td>
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<td>
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<table class="subGroup subGroup_border">
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<tr>
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<th colspan="1">
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Protocol
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</th>
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</tr>
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<tr>
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<td>following procedures outlined by</td>
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</tr>
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<tr>
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<td>
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<select name="dynamicValue" id="dynamicValue" multiple="multiple" size="5" style="width: 216px">
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<option title="A long description for LabA">LabA</option>
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<option>LabB</option>
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</select>
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<input type="hidden" name="dynamicClass" id="dynamicClass" value="http://ecoinformatics.org/oboe/oboe.1.0/oboe-core.owl#Protocol"/>
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</td>
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</tr>
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<tr>
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<td colspan="1">
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<input type="text" name="dynamicValue" id="dynamicValue" class="bp_form_complete-all-uri" size="30" />
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<input type="hidden" name="dynamicClass" id="dynamicClass" value="http://ecoinformatics.org/oboe/oboe.1.0/oboe-core.owl#Protocol"/>
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</td>
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</tr>
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</table>
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</td>
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<td>
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<table class="subGroup subGroup_border">
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<tr>
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<th colspan="2">
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Measurement
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</th>
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</tr>
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<tr>
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<td>typically defined as</td>
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</tr>
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<tr>
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<td>
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<select name="dynamicValue" id="dynamicValue" multiple="multiple" size="5" style="width: 216px">
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<option title="NitrogenConcentration">NitrogenConcentration</option>
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</select>
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<input type="hidden" name="dynamicClass" id="dynamicClass" value="http://ecoinformatics.org/oboe/oboe.1.0/oboe-core.owl#Measurement"/>
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</td>
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</tr>
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<tr>
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<td colspan="1">
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<input type="text" name="dynamicValue" id="dynamicValue" class="bp_form_complete-all-uri" size="30" />
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<input type="hidden" name="dynamicClass" id="dynamicClass" value="http://ecoinformatics.org/oboe/oboe.1.0/oboe-core.owl#Measurement"/>
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</td>
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</tr>
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</table>
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</td>
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</tr>
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<tr>
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<td colspan="5">Match All? <input type="checkbox" name="matchAll" checked="checked"/></td>
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</tr>
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<tr>
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<td colspan="5">From same Observation? <input type="checkbox" name="strict"/></td>
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</tr>
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<tr>
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<td colspan="5"><input type="submit" value="Search"/></td>
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</tr>
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</table>
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<!--
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<tr>
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<td>Entity: (SBC only)</td>
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<td><input type="text" name="entity" class="bp_form_complete-1523-uri" size="100" /></td>
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</tr>
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-->
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</form>
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<!--
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<h2>Ontology search</h2>
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<div id="bp_quick_jump"></div>
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<script type="text/javascript">
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var BP_ontology_id = "all";
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</script>
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<script src="<%=STYLE_SKINS_URL%>/semtools/bioportal/quick_jump.js" type="text/javascript" charset="utf-8">
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</script>
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<h2>Tree browser</h2>
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<object classid="clsid:D27CDB6E-AE6D-11cf-96B8-444553540000"
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id="OntologyTree" width="300" height="100%"
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codebase="http://fpdownload.macromedia.com/get/flashplayer/current/swflash.cab">
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<param name="movie" value="http://keg.cs.uvic.ca/ncbo/ontologytree/OntologyTree.swf" />
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<param name="quality" value="high" />
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<param name="bgcolor" value="#ffffff" />
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<param name="allowScriptAccess" value="always" />
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<param name="flashVars" value="ontology=1523&alerterrors=false&canchangeontology=false&virtual=true" />
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<embed src="http://keg.cs.uvic.ca/ncbo/ontologytree/OntologyTree.swf" quality="high" bgcolor="#ffffff"
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width="300" height="100%" name="OntologyTree" align="middle"
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play="true"
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loop="false"
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allowScriptAccess="always"
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type="application/x-shockwave-flash"
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flashVars="ontology=1523&alerterrors=false&canchangeontology=false&virtual=true"
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pluginspage="http://www.adobe.com/go/getflashplayer">
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</embed>
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</object>
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-->
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<!-- Included default search/login -->
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<% if ( PropertyService.getProperty("spatial.runSpatialOption").equals("true") ) { %>
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<script language="javascript">
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insertMap("<%=CONTEXT_URL%>");
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</script>
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<br/>
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<% } %>
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<script language="javascript">
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insertSearchBox("<%=CONTEXT_URL%>");
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insertLoginBox("<%=CONTEXT_URL%>");
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</script>
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</div>
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<script language="javascript">
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insertTemplateClosing("<%=CONTEXT_URL%>");
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</script>
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</body>
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</html>
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