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<%@ page language="java"%>
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<%
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/**
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*
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* '$RCSfile$'
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* Copyright: 2008 Regents of the University of California and the
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* National Center for Ecological Analysis and Synthesis
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* '$Author: leinfelder $'
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* '$Date: 2010-11-09 12:47:03 -0800 (Tue, 09 Nov 2010) $'
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* '$Revision: 5633 $'
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*
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* This program is free software; you can redistribute it and/or modify
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* it under the terms of the GNU General Public License as published by
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* the Free Software Foundation; either version 2 of the License, or
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* (at your option) any later version.
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*
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* This program is distributed in the hope that it will be useful,
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* but WITHOUT ANY WARRANTY; without even the implied warranty of
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* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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* GNU General Public License for more details.
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* You should have received a copy of the GNU General Public License
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* along with this program; if not, write to the Free Software
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* Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
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*/
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%>
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<%@ include file="../../common/common-settings.jsp"%>
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<%@ include file="../../common/configure-check.jsp"%>
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<html>
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<head>
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<title>Semantic search</title>
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<link rel="stylesheet" type="text/css" href="<%=STYLE_SKINS_URL%>/semtools/semtools.css">
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<script type="text/javascript"
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src="<%=STYLE_SKINS_URL%>/semtools/search.js"></script>
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<script type="text/javascript">
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// Set defaults for this installation
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//var BP_SEARCH_SERVER = "http://oor-01.cim3.net";
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//var BP_SITE = "Sandbox";
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//var BP_ORG = "OOR";
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</script>
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<script language="Javascript" type="text/JavaScript"
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src="<%=STYLE_SKINS_URL%>/semtools/bioportal/form_complete.js">
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</script>
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<script language="javascript" type="text/javascript" src="<%=STYLE_SKINS_URL%>/semtools/semtools.js"></script>
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<script language="javascript" type="text/javascript" src="<%=STYLE_COMMON_URL%>/branding.js"></script>
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<script language="Javascript" type="text/JavaScript">
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function populateActiveDomain(divId, class) {
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var entity = $("#activeEntities").val() ? $("#activeEntities").val() : "";
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var characteristic = $("#activeCharacteristics").val() ? $("#activeCharacteristics").val() : "";
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var protocol = $("#activeProtocols").val() ? $("#activeProtocols").val() : "";
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var measurement = $("#activeMeasurements").val() ? $("#activeMeasurements").val() : "";
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var originalValue = $("#" + divId).val();
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$("#" + divId).load(
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"http://fred.msi.ucsb.edu:8080/knb/metacat",
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{
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'action': "getactivedomain",
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'class': class,
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'entity': entity,
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'characteristic': characteristic,
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'protocol': protocol,
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'measurement': measurement
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},
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function(response, status, xhr) {
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if (status == "error") {
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var msg = "Sorry but there was an error: ";
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$("#error").html(msg + xhr.status + " " + xhr.statusText);
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}
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// set the original selected value
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$("#" + divId).val(originalValue);
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});
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}
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function initialize(source) {
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if (source) {
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source = source.id;
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}
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if (!source) {
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source = "";
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}
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if (source != 'activeEntities') {
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populateActiveDomain('activeEntities', 'org.ecoinformatics.sms.annotation.Entity');
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}
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if (source != 'activeCharacteristics') {
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var v = $('#activeCharacteristics').val();
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populateActiveDomain('activeCharacteristics', 'org.ecoinformatics.sms.annotation.Characteristic');
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$('#activeCharacteristics').val(v);
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}
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if (source != 'activeProtocols') {
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var v = $('#activeProtocols').val();
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populateActiveDomain('activeProtocols', 'org.ecoinformatics.sms.annotation.Protocol');
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$('#activeProtocols').val(v);
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}
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if (source != 'activeMeasurements') {
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var v = $('#activeMeasurements').val();
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populateActiveDomain('activeMeasurements', 'org.ecoinformatics.sms.annotation.Measurement');
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$('#activeMeasurements').val(v);
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}
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}
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</script>
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</head>
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<body onload="initialize()">
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<script language="javascript">
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insertTemplateOpening("<%=CONTEXT_URL%>");
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</script>
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<div id="content_wrapper">
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<h2>Annotation-based search</h2>
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<div id="error">
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<!-- error messages here -->
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</div>
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<form method="POST" action="<%=SERVLET_URL%>" target="_top" id="searchForm" name="searchForm" onSubmit="return checkSearch(this)">
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<input name="query" type="hidden" />
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<input name="qformat" value="semtools" type="hidden" />
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<input name="action" value="semquery" type="hidden" />
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<table class="group group_border">
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<tr>
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<th colspan="3">
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<p>
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Locate <b>data packages</b> that have been semantically annotated within the observation model by
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selecting concepts from
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<br/>
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(a) existing semantic annotations
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<br/>
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(b) registered OBOE extension ontologies
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</p>
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</th>
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</tr>
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<!-- measurement -->
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<tr>
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<td colspan="3">
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<table class="subGroup subGroup_border onehundred_percent">
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<tr>
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<th colspan="2">
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Measurement
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</th>
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</tr>
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<tr>
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<td>a template that defines Entity, Characteristic, Standard, and/or Protocol</td>
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</tr>
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<tr>
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<td>
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<select name="activeMeasurements" id="activeMeasurements" multiple="multiple" size="5" style="width: 100%" onchange="initialize(this)">
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<option>loading...</option>
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</select>
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<input type="hidden" name="activeMeasurementsClass" id="activeMeasurementsClass" value="http://ecoinformatics.org/oboe/oboe.1.0/oboe-core.owl#Measurement"/>
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</td>
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</tr>
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<tr>
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<td colspan="1">
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<input type="text" name="dynamicValue" id="dynamicValue" class="bp_form_complete-all-uri" size="60" />
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<input type="hidden" name="dynamicClass" id="dynamicClass" value="http://ecoinformatics.org/oboe/oboe.1.0/oboe-core.owl#Measurement"/>
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</td>
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</tr>
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</table>
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</td>
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</tr>
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<tr>
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<td>
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<table class="subGroup subGroup_border">
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<tr>
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<th colspan="1">
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Entity
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</th>
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</tr>
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<tr>
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<td>Find observations of</td>
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</tr>
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<tr>
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<td>
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(a)
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<select name="activeEntities" id="activeEntities" multiple="multiple" size="5" style="width: 216px" onchange="initialize(this)">
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<option>loading...</option>
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</select>
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<input type="hidden" name="activeEntitiesClass" id="activeEntitiesClass" value="http://ecoinformatics.org/oboe/oboe.1.0/oboe-core.owl#Entity"/>
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</td>
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</tr>
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<tr>
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<td colspan="1">
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(b)
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<input type="text" name="dynamicValue" id="dynamicValue" class="bp_form_complete-all-uri" size="30" />
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<input type="hidden" name="dynamicClass" id="dynamicClass" value="http://ecoinformatics.org/oboe/oboe.1.0/oboe-core.owl#Entity"/>
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</td>
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</tr>
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</table>
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</td>
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<td>
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<table class="subGroup subGroup_border">
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<tr>
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<th colspan="1">
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Characteristic
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</th>
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</tr>
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<tr>
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<td>with measurements of</td>
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</tr>
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<tr>
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<td>
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<select name="activeCharacteristics" id="activeCharacteristics" multiple="multiple" size="5" style="width: 216px" onchange="initialize(this)">
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<option>loading...</option>
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</select>
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<input type="hidden" name="activeCharacteristicsClass" id="activeCharacteristicsClass" value="http://ecoinformatics.org/oboe/oboe.1.0/oboe-core.owl#Characteristic"/>
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</td>
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</tr>
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<tr>
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<td colspan="1">
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<input type="text" name="dynamicValue" id="dynamicValue" class="bp_form_complete-all-uri" size="30" />
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<input type="hidden" name="dynamicClass" id="dynamicClass" value="http://ecoinformatics.org/oboe/oboe.1.0/oboe-core.owl#Characteristic"/>
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</td>
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</tr>
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</table>
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</td>
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<!-- removing Standard
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<td>
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<table class="subGroup subGroup_border">
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<tr>
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<th colspan="1">
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Standard
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</th>
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</tr>
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<tr>
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<td>were recorded in units of</td>
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</tr>
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<tr>
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<td>
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<select name="activeStandards" id="activeStandards" multiple="multiple" size="5" style="width: 216px" onchange="initialize(this)">
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<option>loading...</option>
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</select>
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<input type="hidden" name="activeStandardsClass" id="activeStandardsClass" value="http://ecoinformatics.org/oboe/oboe.1.0/oboe-core.owl#Standard"/>
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</td>
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</tr>
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<tr>
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<td colspan="1">
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<input type="text" name="dynamicValue" id="dynamicValue" class="bp_form_complete-all-uri" size="30" />
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<input type="hidden" name="dynamicClass" id="dynamicClass" value="http://ecoinformatics.org/oboe/oboe.1.0/oboe-core.owl#Standard"/>
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</td>
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</tr>
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</table>
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</td>
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-->
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<td>
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<table class="subGroup subGroup_border">
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<tr>
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<th colspan="1">
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Protocol
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</th>
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</tr>
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<tr>
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<td>using procedures outlined by</td>
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</tr>
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<tr>
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<td>
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<select name="activeProtocols" id="activeProtocols" multiple="multiple" size="5" style="width: 216px" onchange="initialize(this)">
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<option>loading...</option>
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</select>
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<input type="hidden" name="activeProtocolsClass" id="activeProtocolsClass" value="http://ecoinformatics.org/oboe/oboe.1.0/oboe-core.owl#Protocol"/>
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</td>
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</tr>
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<tr>
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<td colspan="1">
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<input type="text" name="dynamicValue" id="dynamicValue" class="bp_form_complete-all-uri" size="30" />
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<input type="hidden" name="dynamicClass" id="dynamicClass" value="http://ecoinformatics.org/oboe/oboe.1.0/oboe-core.owl#Protocol"/>
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</td>
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</tr>
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</table>
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</td>
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</tr>
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<tr>
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<td colspan="3">Match All? <input type="checkbox" name="matchAll" checked="checked"/></td>
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</tr>
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<tr>
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<td colspan="3">From same Observation? <input type="checkbox" name="strict"/></td>
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</tr>
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<tr>
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<td colspan="3">
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<input type="submit" value="Search"/>
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<input type="reset" value="Clear" onclick="$('#searchForm').get(0).reset(); initialize()"/>
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</td>
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</tr>
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</table>
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<!--
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<tr>
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<td>Entity: (SBC only)</td>
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<td><input type="text" name="entity" class="bp_form_complete-1523-uri" size="100" /></td>
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</tr>
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-->
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</form>
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<!-- Included default search/login -->
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<% if ( PropertyService.getProperty("spatial.runSpatialOption").equals("true") ) { %>
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<script language="javascript">
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insertMap("<%=CONTEXT_URL%>");
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</script>
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<br/>
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<% } %>
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<script language="javascript">
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insertSearchBox("<%=CONTEXT_URL%>");
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insertLoginBox("<%=CONTEXT_URL%>");
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</script>
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</div>
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<script language="javascript">
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insertTemplateClosing("<%=CONTEXT_URL%>");
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</script>
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</body>
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</html>
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