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<?xml version="1.0"?>
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<!--
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* '$RCSfile$'
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* Authors: Matt Jones, CHad Berkley
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* Copyright: 2000 Regents of the University of California and the
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* National Center for Ecological Analysis and Synthesis
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* For Details: http://www.nceas.ucsb.edu/
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*
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* '$Author: leinfelder $'
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* '$Date: 2010-08-30 23:34:14 +0000 (Mon, 30 Aug 2010) $'
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* '$Revision: 5533 $'
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*
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* This program is free software; you can redistribute it and/or modify
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* it under the terms of the GNU General Public License as published by
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* the Free Software Foundation; either version 2 of the License, or
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* (at your option) any later version.
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*
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* This program is distributed in the hope that it will be useful,
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* but WITHOUT ANY WARRANTY; without even the implied warranty of
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* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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* GNU General Public License for more details.
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*
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* You should have received a copy of the GNU General Public License
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* along with this program; if not, write to the Free Software
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* Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
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*
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* This is an XSLT (http://www.w3.org/TR/xslt) stylesheet designed to
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* convert an XML file showing the resultset of a query
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* into an HTML format suitable for rendering with modern web browsers.
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-->
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<xsl:stylesheet
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xmlns:xsl="http://www.w3.org/1999/XSL/Transform"
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xmlns:sms="http://ecoinformatics.org/sms/annotation.0.9"
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xmlns:fn="http://www.w3.org/2005/xpath-functions"
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version="2.0">
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<xsl:output method="html" />
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<xsl:param name="sessionid" />
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<xsl:param name="qformat">semtools</xsl:param>
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<xsl:param name="enableediting">false</xsl:param>
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<xsl:param name="contextURL"/>
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<xsl:param name="tripleURI"><xsl:value-of select="$contextURL" /><![CDATA[/metacat?action=read&qformat=]]><xsl:value-of select="$qformat" /><![CDATA[&sessionid=]]><xsl:value-of select="$sessionid" /><![CDATA[&docid=]]></xsl:param>
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<xsl:param name="labelWidth">120</xsl:param>
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<xsl:key name="mapping" match="//*[local-name()='map']" use="concat(../@id, @measurement)" />
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<xsl:key name="attributes" match="//*[local-name()='map']" use="concat(../@id, @attribute)" />
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<xsl:key name="measurements" match="//*[local-name()='measurement']" use="concat(../../@id, @label)" />
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<xsl:template name="annotation">
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<xsl:param name="showAll">true</xsl:param>
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<table align="center" width="100%" class="subGroup">
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<tr>
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<td>
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<!-- annotation summary -->
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<xsl:call-template name="annotationSummary" />
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</td>
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</tr>
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<xsl:choose>
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<xsl:when test="$showAll='true'">
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<!-- render the full observations and measurements -->
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<xsl:for-each select="./*[local-name()='observation']">
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<tr>
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<td>
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<table class="subGroup subGroup_border onehundred_percent">
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<tr valign="top">
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<td>
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<!-- observation entity -->
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<xsl:call-template name="observation" />
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</td>
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</tr>
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<tr>
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<td>
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<table class="onehundred_percent">
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<tr>
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<!-- measurement -->
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<xsl:for-each select="./*[local-name()='measurement']">
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<td>
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<xsl:call-template name="measurement" />
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</td>
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</xsl:for-each>
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</tr>
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</table>
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</td>
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</tr>
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</table>
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</td>
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</tr>
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</xsl:for-each><!-- end observation -->
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</xsl:when><!--end show all-->
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<xsl:otherwise>
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<tr>
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<td>
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<xsl:call-template name="modelSummary" />
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</td>
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</tr>
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</xsl:otherwise>
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</xsl:choose>
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<tr class="searchresultsdivider">
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<td></td>
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</tr>
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</table>
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</xsl:template>
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<xsl:template name="annotationSummary">
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<table class="subGroup subGroup_border onehundred_percent">
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<tr>
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<th colspan="2">
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Annotation
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<a>
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<xsl:attribute name="href">
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<xsl:value-of select="$tripleURI"/><xsl:value-of select="./@id"/>
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</xsl:attribute>
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(<xsl:value-of select="./@id"/>)
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</a>
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<!-- stats -->
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<span id="annotationStats"></span>
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<script language="JavaScript">
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loadStats(
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'annotationStats',
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'<xsl:value-of select="./@id" />',
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'<xsl:value-of select="$contextURL" />/metacat',
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'<xsl:value-of select="$qformat" />');
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</script>
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</th>
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</tr>
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<tr>
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<xsl:variable name="mapCount">
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<xsl:value-of select="count(./*[local-name()='map'])"/>
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</xsl:variable>
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<td class="rowodd" width="{$labelWidth}">
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Data Table <xsl:value-of select="./@dataTable"/>:
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</td>
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<td class="roweven">
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<xsl:for-each select="./*[local-name()='map']">
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<xsl:value-of select="./@attribute"/>
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<xsl:if test="position() != last()">, </xsl:if>
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</xsl:for-each>
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(<a>
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<xsl:attribute name="href">
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<xsl:value-of select="$tripleURI"/><xsl:value-of select="./@emlPackage"/>&displaymodule=entity&entitytype=dataTable&entityindex=<xsl:value-of select="number(./@dataTable)+1"/>&annotationId=<xsl:value-of select="./@id"/>
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</xsl:attribute>
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<xsl:value-of select="$mapCount"/>
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<xsl:text> attributes</xsl:text>
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</a>)
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</td>
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</tr>
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<tr>
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<td class="rowodd" width="{$labelWidth}">
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Data Package:
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</td>
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<td class="roweven">
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<xsl:value-of select="./@emlPackage"/>
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(<a>
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<xsl:attribute name="href">
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<xsl:value-of select="$tripleURI"/><xsl:value-of select="./@emlPackage"/>
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</xsl:attribute>
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<xsl:text>View Metadata</xsl:text>
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</a>)
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<!-- stats -->
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<span id="emlStats"></span>
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<script language="JavaScript">
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loadStats(
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'emlStats',
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'<xsl:value-of select="./@emlPackage" />',
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'<xsl:value-of select="$contextURL" />/metacat',
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'<xsl:value-of select="$qformat" />');
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</script>
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</td>
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</tr>
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</table>
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</xsl:template>
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<xsl:template name="observation">
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<table class="onehundred_percent">
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<tr>
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<th colspan="2">
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Observation (<xsl:value-of select="./@label"/>)
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</th>
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</tr>
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<tr>
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<td class="rowodd" width="{$labelWidth}">
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Entity:
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</td>
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<td class="roweven">
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<p>
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<xsl:attribute name="title">
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<xsl:value-of select="fn:namespace-uri-for-prefix(substring-before(./*[local-name()='entity']/@id, ':'), .)"/>
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<xsl:text>#</xsl:text>
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<xsl:value-of select="substring-after(./*[local-name()='entity']/@id, ':')"/>
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</xsl:attribute>
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<xsl:value-of select="substring-after(./*[local-name()='entity']/@id, ':')"/>
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</p>
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</td>
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</tr>
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<tr>
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<td class="rowodd" width="{$labelWidth}">
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Ontology:
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</td>
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<td class="roweven">
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<xsl:value-of select="fn:namespace-uri-for-prefix(substring-before(./*[local-name()='entity']/@id, ':'), .)"/>
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</td>
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</tr>
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</table>
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</xsl:template>
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<xsl:template name="measurement">
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<!-- measurement -->
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<table class="subGroup subGroup_border onehundred_percent">
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<tr>
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<th colspan="2">
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Measurement (<xsl:value-of select="./@label" />)
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</th>
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</tr>
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<tr>
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<td class="rowodd" width="{$labelWidth}">
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Column:
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</td>
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<td class="roweven">
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<xsl:variable name="columnkey">
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<xsl:value-of select="concat(../../@id, @label)" />
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</xsl:variable>
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<xsl:for-each select="key('mapping', $columnkey )">
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<xsl:value-of select="./@attribute" />
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</xsl:for-each>
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</td>
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</tr>
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<tr>
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<td class="rowodd" width="{$labelWidth}">
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Characteristic[s]:
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</td>
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<td class="roweven">
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<xsl:for-each select="./*[local-name()='characteristic']">
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<span>
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<xsl:attribute name="title">
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<xsl:value-of select="fn:namespace-uri-for-prefix(substring-before(./@id, ':'), .)"/>
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<xsl:text>#</xsl:text>
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<xsl:value-of select="substring-after(./@id, ':')"/>
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</xsl:attribute>
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<xsl:value-of select="substring-after(./@id, ':')"/>
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</span>
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</xsl:for-each>
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</td>
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</tr>
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<tr>
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<td class="rowodd" width="{$labelWidth}">
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Standard:
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</td>
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<td class="roweven">
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<span>
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<xsl:attribute name="title">
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<xsl:value-of select="fn:namespace-uri-for-prefix(substring-before(./*[local-name()='standard']/@id, ':'), .)"/>
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<xsl:text>#</xsl:text>
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<xsl:value-of select="substring-after(./*[local-name()='standard']/@id, ':')"/>
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</xsl:attribute>
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<xsl:value-of select="substring-after(./*[local-name()='standard']/@id, ':')"/>
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</span>
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</td>
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</tr>
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<tr>
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<td class="rowodd" width="{$labelWidth}">
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Protocol:
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</td>
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<td class="roweven">
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<span>
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<xsl:attribute name="title">
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<xsl:value-of select="fn:namespace-uri-for-prefix(substring-before(./*[local-name()='protocol']/@id, ':'), .)"/>
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<xsl:text>#</xsl:text>
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<xsl:value-of select="substring-after(./*[local-name()='protocol']/@id, ':')"/>
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</xsl:attribute>
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<xsl:value-of select="substring-after(./*[local-name()='protocol']/@id, ':')"/>
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</span>
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</td>
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</tr>
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</table>
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</xsl:template>
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<xsl:template name="measurementSummary">
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<!-- entity -->
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<td>
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<xsl:for-each select="../*[local-name()='entity']">
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<span>
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<xsl:attribute name="title">
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<xsl:value-of select="fn:namespace-uri-for-prefix(substring-before(./@id, ':'), .)"/>
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<xsl:text>#</xsl:text>
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<xsl:value-of select="substring-after(./@id, ':')"/>
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</xsl:attribute>
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<xsl:value-of select="substring-after(./@id, ':')"/>
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</span>
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(<xsl:value-of select="../@label"/>)
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<xsl:if test="position() != last()">, </xsl:if>
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</xsl:for-each>
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</td>
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<td>
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<!-- measurement -->
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<!--
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<xsl:value-of select="./@label" />
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-->
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<!-- characteristic -->
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<xsl:for-each select="./*[local-name()='characteristic']">
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<span>
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<xsl:attribute name="title">
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<xsl:value-of select="fn:namespace-uri-for-prefix(substring-before(./@id, ':'), .)"/>
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<xsl:text>#</xsl:text>
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<xsl:value-of select="substring-after(./@id, ':')"/>
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</xsl:attribute>
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<xsl:value-of select="substring-after(./@id, ':')"/>
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</span>
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<xsl:if test="position() != last()">, </xsl:if>
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</xsl:for-each>
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</td>
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<td>
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<!-- standard -->
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<span>
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<xsl:attribute name="title">
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<xsl:value-of select="fn:namespace-uri-for-prefix(substring-before(./*[local-name()='standard']/@id, ':'), .)"/>
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<xsl:text>#</xsl:text>
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<xsl:value-of select="substring-after(./*[local-name()='standard']/@id, ':')"/>
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</xsl:attribute>
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<xsl:value-of select="substring-after(./*[local-name()='standard']/@id, ':')"/>
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</span>
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</td>
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<td>
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<!-- protocol -->
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<span>
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<xsl:attribute name="title">
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<xsl:value-of select="fn:namespace-uri-for-prefix(substring-before(./*[local-name()='protocol']/@id, ':'), .)"/>
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<xsl:text>#</xsl:text>
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<xsl:value-of select="substring-after(./*[local-name()='protocol']/@id, ':')"/>
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</xsl:attribute>
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<xsl:value-of select="substring-after(./*[local-name()='protocol']/@id, ':')"/>
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</span>
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</td>
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</xsl:template>
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<xsl:template name="modelSummary">
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<table class="subGroup subGroup_border onehundred_percent">
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<tr>
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<th colspan="5">
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Attribute Summary
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(<a>
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<xsl:attribute name="href">
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355
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<xsl:value-of select="$tripleURI"/><xsl:value-of select="./@emlPackage"/>&displaymodule=entity&entitytype=dataTable&entityindex=<xsl:value-of select="number(./@dataTable)+1"/>&annotationId=<xsl:value-of select="./@id"/>
|
|
356
|
</xsl:attribute>
|
|
357
|
<xsl:text>Data Table: </xsl:text>
|
|
358
|
<xsl:value-of select="./@dataTable"/>
|
|
359
|
</a>)
|
|
360
|
</th>
|
|
361
|
</tr>
|
|
362
|
|
|
363
|
|
|
364
|
<tr>
|
|
365
|
<td class="roweven" width="{$labelWidth}"></td>
|
|
366
|
<td class="rowodd">
|
|
367
|
Entity
|
|
368
|
</td>
|
|
369
|
<td class="rowodd">
|
|
370
|
Characteristic
|
|
371
|
</td>
|
|
372
|
<td class="rowodd">
|
|
373
|
Standard
|
|
374
|
</td>
|
|
375
|
<td class="rowodd">
|
|
376
|
Protocol
|
|
377
|
</td>
|
|
378
|
</tr>
|
|
379
|
|
|
380
|
<!-- reference to the annotation parent -->
|
|
381
|
<xsl:variable name="thisAnnotationId">
|
|
382
|
<xsl:value-of select="./@id"/>
|
|
383
|
</xsl:variable>
|
|
384
|
|
|
385
|
<xsl:for-each select="./*[local-name()='map']">
|
|
386
|
<tr>
|
|
387
|
<!-- look up the attribute -->
|
|
388
|
<xsl:variable name="attributeLabel">
|
|
389
|
<xsl:value-of select="./@attribute"/>
|
|
390
|
</xsl:variable>
|
|
391
|
<td class="rowodd">
|
|
392
|
<xsl:value-of select="$attributeLabel"/>
|
|
393
|
</td>
|
|
394
|
|
|
395
|
<!-- look up the attribute mapping for the given attribute -->
|
|
396
|
<xsl:for-each select="key('attributes', concat($thisAnnotationId, $attributeLabel))">
|
|
397
|
<!-- get the <measurement> node using this label -->
|
|
398
|
<xsl:for-each select="key('measurements', concat($thisAnnotationId, ./@measurement))">
|
|
399
|
<xsl:call-template name="measurementSummary"/>
|
|
400
|
</xsl:for-each>
|
|
401
|
</xsl:for-each>
|
|
402
|
|
|
403
|
</tr>
|
|
404
|
|
|
405
|
</xsl:for-each>
|
|
406
|
|
|
407
|
</table>
|
|
408
|
|
|
409
|
</xsl:template>
|
|
410
|
|
|
411
|
<xsl:template name="attributeDetail">
|
|
412
|
<xsl:param name="attributeLabel"/>
|
|
413
|
<!-- look up the attribute mapping for the given label -->
|
|
414
|
<xsl:for-each select="key('attributes', concat(//*[local-name()='annotation']/@id, $attributeLabel))">
|
|
415
|
<!-- get the <measurement> node using this label -->
|
|
416
|
<table>
|
|
417
|
<tr>
|
|
418
|
<xsl:for-each select="key('measurements', concat(//*[local-name()='annotation']/@id, ./@measurement))">
|
|
419
|
<td>
|
|
420
|
<xsl:call-template name="measurement"/>
|
|
421
|
</td>
|
|
422
|
</xsl:for-each>
|
|
423
|
</tr>
|
|
424
|
</table>
|
|
425
|
</xsl:for-each>
|
|
426
|
</xsl:template>
|
|
427
|
|
|
428
|
</xsl:stylesheet>
|