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<?xml version="1.0"?>
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<!--
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* '$RCSfile$'
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* Authors: Matt Jones, CHad Berkley
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* Copyright: 2000 Regents of the University of California and the
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* National Center for Ecological Analysis and Synthesis
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* For Details: http://www.nceas.ucsb.edu/
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*
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* '$Author: leinfelder $'
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* '$Date: 2010-08-30 23:34:14 +0000 (Mon, 30 Aug 2010) $'
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* '$Revision: 5533 $'
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*
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* This program is free software; you can redistribute it and/or modify
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* it under the terms of the GNU General Public License as published by
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* the Free Software Foundation; either version 2 of the License, or
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* (at your option) any later version.
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*
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* This program is distributed in the hope that it will be useful,
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* but WITHOUT ANY WARRANTY; without even the implied warranty of
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* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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* GNU General Public License for more details.
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*
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* You should have received a copy of the GNU General Public License
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* along with this program; if not, write to the Free Software
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* Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
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*
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* This is an XSLT (http://www.w3.org/TR/xslt) stylesheet designed to
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* convert an XML file showing the resultset of a query
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* into an HTML format suitable for rendering with modern web browsers.
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-->
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<xsl:stylesheet
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xmlns:xsl="http://www.w3.org/1999/XSL/Transform"
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xmlns:sms="http://ecoinformatics.org/sms/annotation.0.9"
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xmlns:fn="http://www.w3.org/2005/xpath-functions"
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version="2.0">
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<xsl:output method="html" />
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<xsl:param name="sessionid" />
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<xsl:param name="qformat">semtools</xsl:param>
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<xsl:param name="enableediting">false</xsl:param>
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<xsl:param name="contextURL"/>
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<xsl:param name="tripleURI"><xsl:value-of select="$contextURL" /><![CDATA[/metacat?action=read&qformat=]]><xsl:value-of select="$qformat" /><![CDATA[&sessionid=]]><xsl:value-of select="$sessionid" /><![CDATA[&docid=]]></xsl:param>
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<xsl:param name="labelWidth">120</xsl:param>
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<xsl:param name="showEntity">false</xsl:param>
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<xsl:key name="mapping" match="//*[local-name()='map']" use="concat(../@id, @measurement)" />
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<xsl:key name="attributes" match="//*[local-name()='map']" use="concat(../@id, @attribute)" />
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<xsl:key name="measurements" match="//*[local-name()='measurement']" use="concat(../../@id, @label)" />
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<xsl:template name="annotation">
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<xsl:param name="showAll">true</xsl:param>
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<table align="center" width="100%" class="subGroup">
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<tr>
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<td>
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<!-- annotation summary -->
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<xsl:call-template name="annotationSummary" />
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</td>
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</tr>
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<xsl:choose>
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<xsl:when test="$showAll='true'">
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<!-- render the full observations and measurements -->
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<xsl:for-each select="./*[local-name()='observation']">
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<tr>
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<td>
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<table class="subGroup subGroup_border onehundred_percent">
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<tr valign="top">
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<td>
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<!-- observation entity -->
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<xsl:call-template name="observation" />
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</td>
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</tr>
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<tr>
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<td>
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<table class="onehundred_percent">
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<tr>
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<!-- measurement -->
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<xsl:for-each select="./*[local-name()='measurement']">
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<td>
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<xsl:call-template name="measurement" />
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</td>
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</xsl:for-each>
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</tr>
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</table>
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</td>
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</tr>
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</table>
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</td>
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</tr>
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</xsl:for-each><!-- end observation -->
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</xsl:when><!--end show all-->
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<xsl:otherwise>
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<tr>
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<td>
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<xsl:call-template name="modelSummary" />
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</td>
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</tr>
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</xsl:otherwise>
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</xsl:choose>
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<tr class="searchresultsdivider">
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<td></td>
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</tr>
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</table>
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</xsl:template>
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<xsl:template name="annotationSummary">
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<table class="subGroup subGroup_border onehundred_percent">
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<tr>
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<th colspan="2">
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Annotation
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<a>
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<xsl:attribute name="href">
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<xsl:value-of select="$tripleURI"/><xsl:value-of select="./@id"/>
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</xsl:attribute>
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(<xsl:value-of select="./@id"/>)
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</a>
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<!-- stats -->
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<span id="annotationStats"></span>
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<script language="JavaScript">
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loadStats(
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'annotationStats',
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'<xsl:value-of select="./@id" />',
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'<xsl:value-of select="$contextURL" />/metacat',
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'<xsl:value-of select="$qformat" />');
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</script>
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</th>
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</tr>
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<tr>
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<xsl:variable name="mapCount">
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<xsl:value-of select="count(./*[local-name()='map'])"/>
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</xsl:variable>
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<td class="rowodd" width="{$labelWidth}">
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Data Table <xsl:value-of select="./@dataTable"/>:
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</td>
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<td class="roweven">
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<xsl:for-each select="./*[local-name()='map']">
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<xsl:value-of select="./@attribute"/>
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<xsl:if test="position() != last()">, </xsl:if>
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</xsl:for-each>
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(<a>
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<xsl:attribute name="href">
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<xsl:value-of select="$tripleURI"/><xsl:value-of select="./@emlPackage"/>&displaymodule=entity&entitytype=dataTable&entityindex=<xsl:value-of select="number(./@dataTable)+1"/>&annotationId=<xsl:value-of select="./@id"/>
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</xsl:attribute>
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<xsl:value-of select="$mapCount"/>
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<xsl:text> attributes</xsl:text>
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</a>)
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</td>
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</tr>
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<tr>
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<td class="rowodd" width="{$labelWidth}">
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Data Package:
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</td>
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<td class="roweven">
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<xsl:value-of select="./@emlPackage"/>
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(<a>
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<xsl:attribute name="href">
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<xsl:value-of select="$tripleURI"/><xsl:value-of select="./@emlPackage"/>
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</xsl:attribute>
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<xsl:text>View Metadata</xsl:text>
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</a>)
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<!-- stats -->
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<span id="emlStats"></span>
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<script language="JavaScript">
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loadStats(
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'emlStats',
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'<xsl:value-of select="./@emlPackage" />',
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'<xsl:value-of select="$contextURL" />/metacat',
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'<xsl:value-of select="$qformat" />');
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</script>
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</td>
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</tr>
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</table>
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</xsl:template>
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<xsl:template name="observation">
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<table class="onehundred_percent">
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<tr>
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<th colspan="2">
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Observation (<xsl:value-of select="./@label"/>)
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</th>
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</tr>
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<tr>
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<td class="rowodd" width="{$labelWidth}">
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Entity:
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</td>
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<td class="roweven">
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<p>
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<xsl:attribute name="title">
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<xsl:value-of select="fn:namespace-uri-for-prefix(substring-before(./*[local-name()='entity']/@id, ':'), .)"/>
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<xsl:text>#</xsl:text>
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<xsl:value-of select="substring-after(./*[local-name()='entity']/@id, ':')"/>
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</xsl:attribute>
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<xsl:value-of select="substring-after(./*[local-name()='entity']/@id, ':')"/>
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</p>
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</td>
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</tr>
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<tr>
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<td class="rowodd" width="{$labelWidth}">
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Ontology:
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</td>
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<td class="roweven">
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<xsl:value-of select="fn:namespace-uri-for-prefix(substring-before(./*[local-name()='entity']/@id, ':'), .)"/>
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</td>
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</tr>
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| 215 |
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</table>
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</xsl:template>
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<xsl:template name="measurement">
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<!-- measurement -->
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<table class="subGroup subGroup_border onehundred_percent">
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<tr>
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<th colspan="2">
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Measurement (<xsl:value-of select="./@label" />)
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</th>
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</tr>
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<xsl:choose>
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<xsl:when test="$showEntity = 'true'">
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| 229 |
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<tr>
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| 230 |
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<td class="rowodd" width="{$labelWidth}">
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Entity:
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</td>
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| 233 |
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<td class="roweven">
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<xsl:for-each select="../*[local-name()='entity']">
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<span>
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<xsl:attribute name="title">
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<xsl:value-of select="fn:namespace-uri-for-prefix(substring-before(./@id, ':'), .)"/>
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| 238 |
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<xsl:text>#</xsl:text>
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<xsl:value-of select="substring-after(./@id, ':')"/>
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</xsl:attribute>
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<xsl:value-of select="substring-after(./@id, ':')"/>
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| 242 |
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</span>
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| 243 |
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</xsl:for-each>
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| 244 |
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</td>
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| 245 |
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</tr>
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| 246 |
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</xsl:when>
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| 247 |
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<xsl:otherwise>
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| 248 |
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<tr>
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| 249 |
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<td class="rowodd" width="{$labelWidth}">
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Column:
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| 251 |
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</td>
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| 252 |
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<td class="roweven">
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| 253 |
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<xsl:variable name="columnkey">
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| 254 |
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<xsl:value-of select="concat(../../@id, @label)" />
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| 255 |
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</xsl:variable>
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| 256 |
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<xsl:for-each select="key('mapping', $columnkey )">
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| 257 |
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<xsl:value-of select="./@attribute" />
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| 258 |
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</xsl:for-each>
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| 259 |
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</td>
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| 260 |
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</tr>
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| 261 |
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</xsl:otherwise>
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| 262 |
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</xsl:choose>
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| 264 |
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<tr>
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<td class="rowodd" width="{$labelWidth}">
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Characteristic[s]:
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| 268 |
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</td>
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| 269 |
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<td class="roweven">
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| 270 |
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<xsl:for-each select="./*[local-name()='characteristic']">
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<span>
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<xsl:attribute name="title">
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<xsl:value-of select="fn:namespace-uri-for-prefix(substring-before(./@id, ':'), .)"/>
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<xsl:text>#</xsl:text>
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<xsl:value-of select="substring-after(./@id, ':')"/>
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| 276 |
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</xsl:attribute>
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| 277 |
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<xsl:value-of select="substring-after(./@id, ':')"/>
|
| 278 |
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</span>
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| 279 |
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</xsl:for-each>
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| 280 |
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</td>
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| 281 |
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</tr>
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| 282 |
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<tr>
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<td class="rowodd" width="{$labelWidth}">
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Standard:
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| 285 |
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</td>
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| 286 |
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<td class="roweven">
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| 287 |
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<span>
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| 288 |
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<xsl:attribute name="title">
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| 289 |
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<xsl:value-of select="fn:namespace-uri-for-prefix(substring-before(./*[local-name()='standard']/@id, ':'), .)"/>
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| 290 |
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<xsl:text>#</xsl:text>
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| 291 |
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<xsl:value-of select="substring-after(./*[local-name()='standard']/@id, ':')"/>
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| 292 |
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</xsl:attribute>
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| 293 |
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<xsl:value-of select="substring-after(./*[local-name()='standard']/@id, ':')"/>
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| 294 |
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</span>
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| 295 |
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</td>
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| 296 |
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</tr>
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| 297 |
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<tr>
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| 298 |
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<td class="rowodd" width="{$labelWidth}">
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| 299 |
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Protocol:
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| 300 |
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</td>
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| 301 |
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<td class="roweven">
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| 302 |
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<span>
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| 303 |
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<xsl:attribute name="title">
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| 304 |
|
|
<xsl:value-of select="fn:namespace-uri-for-prefix(substring-before(./*[local-name()='protocol']/@id, ':'), .)"/>
|
| 305 |
|
|
<xsl:text>#</xsl:text>
|
| 306 |
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|
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|
<xsl:value-of select="substring-after(./*[local-name()='protocol']/@id, ':')"/>
|
| 307 |
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|
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|
</xsl:attribute>
|
| 308 |
|
|
<xsl:value-of select="substring-after(./*[local-name()='protocol']/@id, ':')"/>
|
| 309 |
|
|
</span>
|
| 310 |
|
|
</td>
|
| 311 |
|
|
</tr>
|
| 312 |
|
|
</table>
|
| 313 |
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|
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|
|
| 314 |
|
|
</xsl:template>
|
| 315 |
|
|
|
| 316 |
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|
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|
<xsl:template name="measurementSummary">
|
| 317 |
|
|
<!-- entity -->
|
| 318 |
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|
leinfelder
|
<td>
|
| 319 |
|
|
<xsl:for-each select="../*[local-name()='entity']">
|
| 320 |
|
|
<span>
|
| 321 |
|
|
<xsl:attribute name="title">
|
| 322 |
|
|
<xsl:value-of select="fn:namespace-uri-for-prefix(substring-before(./@id, ':'), .)"/>
|
| 323 |
|
|
<xsl:text>#</xsl:text>
|
| 324 |
|
|
<xsl:value-of select="substring-after(./@id, ':')"/>
|
| 325 |
|
|
</xsl:attribute>
|
| 326 |
|
|
<xsl:value-of select="substring-after(./@id, ':')"/>
|
| 327 |
|
|
</span>
|
| 328 |
|
|
(<xsl:value-of select="../@label"/>)
|
| 329 |
|
|
<xsl:if test="position() != last()">, </xsl:if>
|
| 330 |
|
|
</xsl:for-each>
|
| 331 |
|
|
</td>
|
| 332 |
|
|
<td>
|
| 333 |
|
|
<!-- measurement -->
|
| 334 |
|
|
<!--
|
| 335 |
|
|
<xsl:value-of select="./@label" />
|
| 336 |
|
|
-->
|
| 337 |
|
|
<!-- characteristic -->
|
| 338 |
|
|
<xsl:for-each select="./*[local-name()='characteristic']">
|
| 339 |
|
|
<span>
|
| 340 |
|
|
<xsl:attribute name="title">
|
| 341 |
|
|
<xsl:value-of select="fn:namespace-uri-for-prefix(substring-before(./@id, ':'), .)"/>
|
| 342 |
|
|
<xsl:text>#</xsl:text>
|
| 343 |
|
|
<xsl:value-of select="substring-after(./@id, ':')"/>
|
| 344 |
|
|
</xsl:attribute>
|
| 345 |
|
|
<xsl:value-of select="substring-after(./@id, ':')"/>
|
| 346 |
|
|
</span>
|
| 347 |
|
|
<xsl:if test="position() != last()">, </xsl:if>
|
| 348 |
|
|
</xsl:for-each>
|
| 349 |
|
|
</td>
|
| 350 |
|
|
<td>
|
| 351 |
|
|
<!-- standard -->
|
| 352 |
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|
leinfelder
|
<span>
|
| 353 |
|
|
<xsl:attribute name="title">
|
| 354 |
5766
|
leinfelder
|
<xsl:value-of select="fn:namespace-uri-for-prefix(substring-before(./*[local-name()='standard']/@id, ':'), .)"/>
|
| 355 |
5740
|
leinfelder
|
<xsl:text>#</xsl:text>
|
| 356 |
5766
|
leinfelder
|
<xsl:value-of select="substring-after(./*[local-name()='standard']/@id, ':')"/>
|
| 357 |
|
|
</xsl:attribute>
|
| 358 |
|
|
<xsl:value-of select="substring-after(./*[local-name()='standard']/@id, ':')"/>
|
| 359 |
5740
|
leinfelder
|
</span>
|
| 360 |
5766
|
leinfelder
|
</td>
|
| 361 |
|
|
<td>
|
| 362 |
|
|
<!-- protocol -->
|
| 363 |
5740
|
leinfelder
|
<span>
|
| 364 |
|
|
<xsl:attribute name="title">
|
| 365 |
5766
|
leinfelder
|
<xsl:value-of select="fn:namespace-uri-for-prefix(substring-before(./*[local-name()='protocol']/@id, ':'), .)"/>
|
| 366 |
5740
|
leinfelder
|
<xsl:text>#</xsl:text>
|
| 367 |
5766
|
leinfelder
|
<xsl:value-of select="substring-after(./*[local-name()='protocol']/@id, ':')"/>
|
| 368 |
|
|
</xsl:attribute>
|
| 369 |
|
|
<xsl:value-of select="substring-after(./*[local-name()='protocol']/@id, ':')"/>
|
| 370 |
5740
|
leinfelder
|
</span>
|
| 371 |
5766
|
leinfelder
|
</td>
|
| 372 |
5740
|
leinfelder
|
</xsl:template>
|
| 373 |
|
|
|
| 374 |
|
|
<xsl:template name="modelSummary">
|
| 375 |
5743
|
leinfelder
|
<table class="subGroup subGroup_border onehundred_percent">
|
| 376 |
5740
|
leinfelder
|
<tr>
|
| 377 |
5766
|
leinfelder
|
<th colspan="5">
|
| 378 |
5740
|
leinfelder
|
Attribute Summary
|
| 379 |
5766
|
leinfelder
|
(<a>
|
| 380 |
|
|
<xsl:attribute name="href">
|
| 381 |
|
|
<xsl:value-of select="$tripleURI"/><xsl:value-of select="./@emlPackage"/>&displaymodule=entity&entitytype=dataTable&entityindex=<xsl:value-of select="number(./@dataTable)+1"/>&annotationId=<xsl:value-of select="./@id"/>
|
| 382 |
|
|
</xsl:attribute>
|
| 383 |
|
|
<xsl:text>Data Table: </xsl:text>
|
| 384 |
|
|
<xsl:value-of select="./@dataTable"/>
|
| 385 |
|
|
</a>)
|
| 386 |
5740
|
leinfelder
|
</th>
|
| 387 |
|
|
</tr>
|
| 388 |
|
|
|
| 389 |
5766
|
leinfelder
|
|
| 390 |
|
|
<tr>
|
| 391 |
|
|
<td class="roweven" width="{$labelWidth}"></td>
|
| 392 |
|
|
<td class="rowodd">
|
| 393 |
|
|
Entity
|
| 394 |
|
|
</td>
|
| 395 |
|
|
<td class="rowodd">
|
| 396 |
|
|
Characteristic
|
| 397 |
|
|
</td>
|
| 398 |
|
|
<td class="rowodd">
|
| 399 |
|
|
Standard
|
| 400 |
|
|
</td>
|
| 401 |
|
|
<td class="rowodd">
|
| 402 |
|
|
Protocol
|
| 403 |
|
|
</td>
|
| 404 |
|
|
</tr>
|
| 405 |
|
|
|
| 406 |
5740
|
leinfelder
|
<!-- reference to the annotation parent -->
|
| 407 |
|
|
<xsl:variable name="thisAnnotationId">
|
| 408 |
|
|
<xsl:value-of select="./@id"/>
|
| 409 |
|
|
</xsl:variable>
|
| 410 |
|
|
|
| 411 |
|
|
<xsl:for-each select="./*[local-name()='map']">
|
| 412 |
|
|
<tr>
|
| 413 |
|
|
<!-- look up the attribute -->
|
| 414 |
|
|
<xsl:variable name="attributeLabel">
|
| 415 |
|
|
<xsl:value-of select="./@attribute"/>
|
| 416 |
|
|
</xsl:variable>
|
| 417 |
|
|
<td class="rowodd">
|
| 418 |
|
|
<xsl:value-of select="$attributeLabel"/>
|
| 419 |
|
|
</td>
|
| 420 |
5766
|
leinfelder
|
|
| 421 |
|
|
<!-- look up the attribute mapping for the given attribute -->
|
| 422 |
|
|
<xsl:for-each select="key('attributes', concat($thisAnnotationId, $attributeLabel))">
|
| 423 |
|
|
<!-- get the <measurement> node using this label -->
|
| 424 |
|
|
<xsl:for-each select="key('measurements', concat($thisAnnotationId, ./@measurement))">
|
| 425 |
|
|
<xsl:call-template name="measurementSummary"/>
|
| 426 |
|
|
</xsl:for-each>
|
| 427 |
|
|
</xsl:for-each>
|
| 428 |
|
|
|
| 429 |
5740
|
leinfelder
|
</tr>
|
| 430 |
|
|
|
| 431 |
|
|
</xsl:for-each>
|
| 432 |
|
|
|
| 433 |
|
|
</table>
|
| 434 |
|
|
|
| 435 |
|
|
</xsl:template>
|
| 436 |
|
|
|
| 437 |
5721
|
leinfelder
|
<xsl:template name="attributeDetail">
|
| 438 |
|
|
<xsl:param name="attributeLabel"/>
|
| 439 |
|
|
<!-- look up the attribute mapping for the given label -->
|
| 440 |
5727
|
leinfelder
|
<xsl:for-each select="key('attributes', concat(//*[local-name()='annotation']/@id, $attributeLabel))">
|
| 441 |
5721
|
leinfelder
|
<!-- get the <measurement> node using this label -->
|
| 442 |
5726
|
leinfelder
|
<table>
|
| 443 |
5721
|
leinfelder
|
<tr>
|
| 444 |
5727
|
leinfelder
|
<xsl:for-each select="key('measurements', concat(//*[local-name()='annotation']/@id, ./@measurement))">
|
| 445 |
5728
|
leinfelder
|
<td>
|
| 446 |
|
|
<xsl:call-template name="measurement"/>
|
| 447 |
|
|
</td>
|
| 448 |
5721
|
leinfelder
|
</xsl:for-each>
|
| 449 |
|
|
</tr>
|
| 450 |
|
|
</table>
|
| 451 |
|
|
</xsl:for-each>
|
| 452 |
|
|
</xsl:template>
|
| 453 |
5536
|
leinfelder
|
|
| 454 |
|
|
</xsl:stylesheet>
|