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<%@ page language="java"%>
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<%
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/**
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 * 
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 * '$RCSfile$'
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 * Copyright: 2008 Regents of the University of California and the
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 *             National Center for Ecological Analysis and Synthesis
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 *    '$Author: leinfelder $'
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 *      '$Date: 2011-01-07 11:51:00 -0800 (Fri, 07 Jan 2011) $'
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 * '$Revision: 5787 $'
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 * 
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 * This program is free software; you can redistribute it and/or modify
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 * it under the terms of the GNU General Public License as published by
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 * the Free Software Foundation; either version 2 of the License, or
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 * (at your option) any later version.
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 * 
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 * This program is distributed in the hope that it will be useful,
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 * but WITHOUT ANY WARRANTY; without even the implied warranty of
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 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
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 * GNU General Public License for more details.
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 * You should have received a copy of the GNU General Public License
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 * along with this program; if not, write to the Free Software
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 *  Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA  02111-1307  USA
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 */  
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%>
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<%@ include file="../../common/common-settings.jsp"%>
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<%@ include file="../../common/configure-check.jsp"%>
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<html>
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<head>
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<title>Semantic search</title>
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<link rel="stylesheet" type="text/css" href="<%=STYLE_SKINS_URL%>/semtools/semtools.css">
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<link rel="stylesheet" type="text/css" href="<%=STYLE_COMMON_URL%>/jquery/jqueryui/css/smoothness/jquery-ui-1.8.6.custom.css">
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<script language="javascript" type="text/javascript" src="<%=STYLE_COMMON_URL%>/jquery/jquery.js"></script>
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<script language="javascript" type="text/javascript" src="<%=STYLE_COMMON_URL%>/jquery/jsTree/_lib/jquery.cookie.js"></script>
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<script language="javascript" type="text/javascript" src="<%=STYLE_COMMON_URL%>/jquery/jsTree/jquery.jstree.js"></script>
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<script language="javascript" type="text/javascript" src="<%=STYLE_COMMON_URL%>/jquery/jqueryui/js/jquery-ui-1.8.6.custom.min.js"></script>
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<script language="javascript" type="text/javascript" src="<%=STYLE_COMMON_URL%>/jquery/busy/jquery.busy.js"></script>
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<script language="javascript" type="text/javascript" src="<%=STYLE_SKINS_URL%>/semtools/search.js"></script>
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<script language="javascript" type="text/javascript" src="<%=STYLE_SKINS_URL%>/semtools/semtools.js"></script>
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<script language="javascript" type="text/javascript" src="<%=STYLE_COMMON_URL%>/branding.js"></script>
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<script language="Javascript" type="text/JavaScript"><!--
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function populateActiveDomain(divId, class) {
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	// collect the filtering values we have so far
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	// these are hidden input fields in the form for holding the selected values
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	var entity = $("#activeEntitiesValue").val() ? $("#activeEntitiesValue").val() : "";
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	var characteristic = $("#activeCharacteristicsValue").val() ? $("#activeCharacteristicsValue").val() : "";
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	var protocol = $("#activeProtocolsValue").val() ? $("#activeProtocolsValue").val() : "";
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	var measurement = $("#activeMeasurementsValue").val() ? $("#activeMeasurementsValue").val() : "";
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56
	// TODO: remember the selected value for this when filtering by active domain
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	var selectedNode = $("#" + divId).jstree("get_selected", $("#" + divId));
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	var selectedNodeId = $(selectedNode).attr("id");
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	//alert(divId + " selected node: " + selectedNodeId);
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	// load the tree for the given div, passing in the other filtered values
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	$("#" + divId).load(
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		"<%=SERVLET_URL%>", 
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		{
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			'action': "getactivedomain",
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			'class': class,
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			'entity': entity,
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			'characteristic': characteristic,
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			'protocol': protocol,
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			'measurement': measurement
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		},
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		// call back function when loading finishes
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		function(response, status, xhr) {
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			//alert("callback for: " + divId + " selected node: " + selectedNodeId);
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			// error
76
			if (status == "error") {
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				var msg = "Sorry but there was an error: ";
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				$("#error").html(msg + xhr.status + " " + xhr.statusText);
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			}
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			// make it a js tree
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			$(function () {
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				$("#" + divId)
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					//bind calls here
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					.jstree({
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						"ui" : {
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							"select_limit" : 1,
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							"select_multiple_modifier" : "alt",
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							"selected_parent_close" : "select_parent"//,
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							//"initially_select" : [ selectedNodeId ]
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						},
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						"themes" : {
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							"theme" : "default",
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							"dots" : true,
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							"icons" : false
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						},
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						//"core" : { "initially_open" : [ selectedNodeId ] },
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						"search" : { "case_insensitive" : true },
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						//"cookies" : { 
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						//		"save_opened" : "jstree_open_" + divId,
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						//		"save_selected" : "jstree_select_" + divId,
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						//},
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						"plugins" : [ 
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							"themes", 
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							"html_data", 
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							"ui", 
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							//"cookies", 
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							"search" ]
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					});
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			});
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112
			// enable searching on it
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			$("#" + divId + "Search").keyup(
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				function () {
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					var searchTerm = $("#" + divId + "Search").val();
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					if (searchTerm.length >= 3) {
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						// search
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						$("#" + divId).jstree("search", searchTerm);
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						// now prune
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						prune(divId, "jstree-search");
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						// is it an exact match?
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						checkExactMatch(divId, searchTerm, "jstree-search");
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					}
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				});
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126
			// toggle the active domain prune
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			$("#" + divId + "Only").click(function() {
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				doActiveDomain(divId);
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			});	
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131
			// actually prune if we should
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			doActiveDomain(divId);
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			// open first node always
135
			$("#" + divId).jstree("open_node", $("#" + divId).children("ul").first().children("li").first());
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			// open to the node to last selected
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			var nodePath = $("#" + divId).jstree("get_path", $(selectedNode));
139
			if (nodePath) {
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				for (var index = 0; index < nodePath.length; index++) {
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					$("#" + divId).jstree("open_node", $("#" + nodePath[index]));
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				}
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				// select the original node
144
				$("#" + divId).jstree("select_node", $(selectedNode), false);
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				$("#" + divId).jstree("refresh", $(selectedNode));
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				// TODO: scroll to selected node. 
147
				// This is supposed to be part of jsTree 1.0-rc2 but appears to be broken
148
			}
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150
		});
151
}
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/**
153
* Prunes the given tree to inlcude the given matched class 
154
**/
155
function prune(divId, matchClass) {
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157
	// show all nodes (reset)
158
	$("#" + divId).find("li").show();
159
	
160
	// done if we don't have any thing to prune
161
	if (!matchClass) {
162
		return;
163
	}
164
	
165
	// get all non-matched anchor tags
166
	var nonmatches = $("#" + divId).find("a").not("." + matchClass);
167
	
168
	// get their parent nodes
169
	nonmatches = $(nonmatches).parents("li");
170

    
171
	// are there any matches under each parent node?
172
	$(nonmatches).each(
173
		function(index) {
174
			// do any chidren match?
175
			var childMatches = $(this).find("a." + matchClass);
176
			if (childMatches && childMatches.length > 0) {
177
				return true;
178
			}
179
			// parent matches?
180
			var parentMatches = $(this).parents("li").children("a." + matchClass);
181
			if (parentMatches && parentMatches.length > 0) {
182
				return true;
183
			}
184
			// hide this node if no matches under it
185
			$(this).hide();
186
		});
187
}
188
function checkExactMatch(divId, searchTerm, matchClass) {
189
	// get the current search matches
190
	var matches = $("#" + divId).find("a." + matchClass);
191
	// get their parent nodes
192
	matches = $(matches).parents("li");
193
	// check for exact matches
194
	var exactMatch = $(matches).filter("#" + searchTerm).first();
195
	if (exactMatch && exactMatch.length == 1) {
196
		//alert("exactMatch: " + exactMatch);
197
		// select in the tree, honoring the configured selection limit
198
		$("#" + divId).jstree("select_node", $(exactMatch), true);
199
		// act as those you clicked it
200
		// TODO: convert to event listeners on the tree
201
		select($(exactMatch).children("a"));
202
	}
203
}
204
function doActiveDomain(divId) {
205
	if ($("#" + divId + "Only").is(":checked")) {
206
		// prune to active
207
		prune(divId, "bold");
208
	} else {
209
		// reset
210
		prune(divId, null);
211
	}
212
}
213
function initialize(source) {
214
	// we don't want to reload the source of the filtering request
215
	// but we do want to reload the other trees for active domains
216
	// we reload all of them if no source is given - first time the page loads
217
	if (source) {
218
		source = $(source).attr("id");
219
	}
220
	if (!source) {
221
		source = "";
222
	}
223
	if (source != 'activeEntities') {
224
		populateActiveDomain('activeEntities', 'org.ecoinformatics.sms.annotation.Entity');
225
	}
226
	if (source != 'activeCharacteristics') {
227
		populateActiveDomain('activeCharacteristics', 'org.ecoinformatics.sms.annotation.Characteristic');
228
	}
229
	if (source != 'activeProtocols') {
230
		populateActiveDomain('activeProtocols', 'org.ecoinformatics.sms.annotation.Protocol');
231
	}
232
	if (source != 'activeMeasurements') {
233
		populateActiveDomain('activeMeasurements', 'org.ecoinformatics.sms.annotation.Measurement');
234
	}
235
}
236
function select(item) {
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238
	// get the selected value, stored in the title attribute of the item <a> tag
239
	var value = $(item).attr("title");
240
	//alert("value: " + value);
241
	
242
	// get the parent div so we know what kind of class it is meant to filter
243
	// this is "the first parent of the class 'select'"
244
	var parent = $(item).parents("div.select:first");
245
	//alert("parent: " + parent);
246
	
247
	// set the value for the hidden input value
248
	// the input field of class "conceptValue" will hold it, this way we don't need to know the id
249
	var input = $(parent).children("input.conceptValue");
250
	$(input).val(value);
251
	//alert("input: " + input);
252
	
253
	// set it in the search field
254
	var treeInstance = $(item).parents("div.jstree:first");
255
	var shortName = $(item).parent().attr("id");
256
	$("#" + $(treeInstance).attr("id") + "Search").val(shortName)
257

    
258
	// refresh the search results
259
	doSearch($("#searchForm").get(0));
260
	
261
	// refresh the other trees for active domain after this filtering action
262
	initialize($(parent).children("div"));
263
}
264
function doSearch(formObj) {
265
	// set the hidden parameters based on the current state of the form
266
	checkSearch(formObj);
267
	
268
	// start the busy indicator
269
	$("#searchResults").busy(
270
			{
271
				position	: 'left', 
272
				offset		: -30, 
273
				hide		: true, 
274
				img			: "<%=STYLE_COMMON_URL%>/jquery/busy/busy.gif" 
275
			});
276
	
277
	//load the results
278
	$("#searchResults").load(
279
		"<%=SERVLET_URL%>" + " #content_wrapper",
280
		$(formObj).serialize(),
281
		// call back function when loading finishes
282
		function(response, status, xhr) {
283
			if (status == "error") {
284
				var msg = "Sorry but there was an error performing the search: ";
285
				$("#error").html(msg + xhr.status + " " + xhr.statusText);
286
			}
287
			// collapsible search results - show and hide the next div
288
			$(function() {
289
				$('#searchResults').find('.accordian').click(function() {
290
					var ref = $(this);
291
					$(this).parent().next().slideToggle(
292
						"slow",
293
						function() {
294
							if ($(ref).parent().next().is(":visible")) {
295
								$(ref).html("-");
296
							} else {
297
								$(ref).html("+");
298
							}
299
						});
300
					return false;
301
				}).parent().next().hide();
302
			});
303
			
304
			// stop the busy indicator
305
			$("#searchResults").busy("hide");
306
		});
307
		
308
	return false;
309
	
310
}
311
function loadCart() {
312

    
313
	// start the busy indicator
314
	$("#cartResults").busy(
315
		{
316
			position	: 'left', 
317
			offset		: -30, 
318
			hide		: true, 
319
			img			: "<%=STYLE_COMMON_URL%>/jquery/busy/busy.gif" 
320
		});
321
	
322
	// for looking up the cart
323
	var params = 
324
	{
325
		'action': 'getcart',
326
		'showAdd': 'false',
327
		'showRemove': 'true',
328
		'qformat': 'semtools'
329
	};
330
	//load the cart results
331
	$("#cartResults").load(
332
		"<%=SERVLET_URL%>" + " #content_wrapper",
333
		params,
334
		// call back function when loading finishes
335
		function(response, status, xhr) {
336
			if (status == "error") {
337
				var msg = "Sorry but there was an error performing the search: ";
338
				$("#error").html(msg + xhr.status + " " + xhr.statusText);
339
			}
340
			// collapsible search results - show and hide the next div
341
			$(function() {
342
				$('#cartResults').find('.accordian').click(function() {
343
					var ref = $(this);
344
					$(this).parent().next().slideToggle(
345
						"slow",
346
						function() {
347
							if ($(ref).parent().next().is(":visible")) {
348
								$(ref).html("-");
349
							} else {
350
								$(ref).html("+");
351
							}
352
						});
353
					return false;
354
				}).parent().next().hide();
355
			});
356
			
357
			// stop the busy indicator
358
			$("#cartResults").busy("hide");
359
			
360
			//set the count for the tab label
361
			var title = "Cart (" + $("#cartResults").find(".resultCount:first").html() + ")";
362
			$("#searchTabs > ul > li").last().children("a").html("<span>" + title + "</span>"); 
363
			
364
		});
365
	return true;
366
}
367
function clearCart() {
368

    
369
	// for looking up the cart
370
	var params = 
371
	{
372
		'action': 'editcart',
373
		'operation': 'clear',
374
		'qformat': 'semtools'
375
	};
376
	// post the cart clear
377
	$("#cartResults").load(
378
		"<%=SERVLET_URL%>",
379
		params,
380
		// call back function when loading finishes
381
		function(response, status, xhr) {
382
			if (status == "error") {
383
				var msg = "Sorry but there was an error clearing the cart: ";
384
				$("#error").html(msg + xhr.status + " " + xhr.statusText);
385
			}
386
		});
387
	return true;
388
}
389
function clearForm() {
390
	// clear the form values
391
	$('#searchForm').get(0).reset();
392
	// clear each of the tree selections
393
	$(".jstree").each(function(index) {
394
		$(this).jstree("deselect_all");
395
	});
396
	$("input.conceptValue").each(function(index) {
397
		$(this).val("");
398
	});
399
	// reload the trees
400
	initialize();
401
	// reload the search results
402
	//alert($('#searchForm').get(0));
403
	doSearch($('#searchForm').get(0));
404
}
405
function addCurrent() {
406

    
407
	// make a container for this item
408
	var count = $("#searchCriteria").children(".searchItem").length;
409
	count++;
410
	var containerId = "searchItem_" + count;
411
	var container = "<div class='searchItem' id='" + containerId + "'/>";
412
	$("#searchCriteria").append(container);
413
	
414
	// get the current values
415
	$("input.conceptValue").each(function(index) {
416
		var title = $(this).attr("title");
417
		var value = $(this).val();
418
		var shortName = value.substr(value.lastIndexOf("#") + 1);
419
		var clone = $(this).clone();
420
		$(clone).removeClass("conceptValue");
421
		// put the value in the container
422
		$("#" + containerId).append(clone);
423
		$("#" + containerId).append("[" + title + " = " + shortName + "] ");
424
	});
425
	// get the current classes (for search to work correctly we need class+value for each entry)
426
	$("input.conceptClass").each(function(index) {
427
		var clone = $(this).clone();
428
		$(clone).removeClass("conceptClass");
429
		// put the class in the container
430
		$("#" + containerId).append(clone);
431
	});
432
	
433
	// add the remove button
434
	$("#" + containerId).append("<input type='button' value='Remove'/>").click(function() {
435
		// remove the container (includes the form objects we added)
436
		$("#" + containerId).remove();
437
		// refresh the search results now that they are less restrictive
438
		doSearch($("#searchForm").get(0));
439
	});
440
}
441
/**
442
 * Perform this when the page first loads
443
 */
444
function pageLoad() {
445
	initialize();
446
	doSearch($('#searchForm').get(0));
447
	loadCart();
448
}
449
function donothing() {}
450
--></script>
451

    
452
</head>
453
<body onload="pageLoad()">
454
<script language="javascript">
455
	insertTemplateOpening("<%=CONTEXT_URL%>");
456
</script>
457

    
458
<div id="content_wrapper">
459
 
460
<h2>Semantic search</h2>
461

    
462
<div id="error">
463
	<!-- error messages here -->
464
</div>
465

    
466
<!-- set up the tabs -->
467
<script>
468
	$(function() {
469
		$("#searchTabs").tabs();
470
		$("#searchTabs").tabs("add", "#ecpTab", "Entity, Characteristic, Protocol");
471
		$("#searchTabs").tabs("add", "#measurementTab", "Measurement");
472
		$("#searchTabs").tabs("add", "#optionsTab", "Options");
473
		$("#searchTabs").tabs("add", "#cartTab", "Cart");
474
	});
475
</script>
476

    
477
<form method="POST" 
478
		action="<%=SERVLET_URL%>" 
479
		target="_top" 
480
		id="searchForm" 
481
		name="searchForm" 
482
		onSubmit="return doSearch(this)">
483
	<input name="query" type="hidden" />
484
	<input name="qformat" value="semtools" type="hidden" />
485
	<input name="includeHeader" value="false" type="hidden" />
486
	<input name="showAdd" value="true" type="hidden" />
487
	<input name="showRemove" value="false" type="hidden" />
488
	<input name="action" value="semquery" type="hidden" />
489

    
490
	<!-- tabs for the search interface -->		
491
	<div id="searchTabs">
492
		<!-- place holder for ui tabs -->
493
		<ul></ul>
494
	
495
		<!-- other criteria tabs -->
496
		<div id="ecpTab">
497
			<table>
498
				<tr>
499
					<td>
500
						<table class="subGroup subGroup_border">
501
							
502
							<tr>
503
								<th><p>Find observations of</p></th>
504
							</tr>
505
							<tr>
506
								<td>
507
									<input type="text" id="activeEntitiesSearch" />
508
									<input type="checkbox" id="activeEntitiesOnly" title="Show only active concepts" />
509
									<div class="select">
510
										<div id="activeEntities" class="activeTree">
511
											<p>loading...</p>
512
										</div>
513
										<input type="hidden" class="conceptValue" name="activeEntitiesValue" id="activeEntitiesValue" title="Entity"/>
514
										<input type="hidden" class="conceptClass" name="activeEntitiesClass" id="activeEntitiesClass" value="http://ecoinformatics.org/oboe/oboe.1.0/oboe-core.owl#Entity"/>
515
									</div>
516
								</td>
517
							</tr>
518
						</table>
519
					</td>
520
					<td>
521
						<table class="subGroup subGroup_border">
522
							<tr>
523
								<th><p>with measurements of</p></th>
524
							</tr>
525
							<tr>
526
								<td>
527
									<input type="text" id="activeCharacteristicsSearch" />
528
									<input type="checkbox" id="activeCharacteristicsOnly" title="Show only active concepts" />
529
									<div class="select">
530
										<div id="activeCharacteristics" class="activeTree">
531
											<p>loading...</p>
532
										</div>
533
										<input type="hidden" class="conceptValue" name="activeCharacteristicsValue" id="activeCharacteristicsValue" title="Characteristic"/>
534
										<input type="hidden" class="conceptClass" name="activeCharacteristicsClass" id="activeCharacteristicsClass" value="http://ecoinformatics.org/oboe/oboe.1.0/oboe-core.owl#Characteristic"/>
535
									</div>
536
								</td>
537
							</tr>
538
						</table>
539
					</td>
540
					<td>
541
						<table class="subGroup subGroup_border">
542
							<tr>
543
								<th><p>using procedures outlined by</p></th>
544
							</tr>
545
							<tr>
546
								<td>
547
									<input type="text" id="activeProtocolsSearch" />
548
									<input type="checkbox" id="activeProtocolsOnly" title="Show only active concepts" />
549
									<div class="select">
550
										<div id="activeProtocols" class="activeTree">
551
											<p>loading...</p>
552
										</div>
553
										<input type="hidden" class="conceptValue" name="activeProtocolsValue" id="activeProtocolsValue" title="Protocol"/>
554
										<input type="hidden" class="conceptClass" name="activeProtocolsClass" id="activeProtocolsClass" value="http://ecoinformatics.org/oboe/oboe.1.0/oboe-core.owl#Protocol"/>
555
									</div>
556
								</td>
557
							</tr>
558
						</table>
559
					</td>
560
				</tr>
561
			</table>
562

    
563
			<!-- collected search criteria here -->
564
			<table class="subGroup subGroup_border onehundred_percent">
565
				<tr>
566
					<th>
567
						<p>
568
						Search criteria
569
						<input type="button" value="Save current selection as criterion" onclick="addCurrent()"/>
570
						</p>
571
					</th>
572
				</tr>
573
				<tr>
574
					<td>
575
						<div id="searchCriteria">
576
						</div>
577
					</td>
578
				</tr>
579
			</table>
580

    
581
		</div>
582
		
583
		<!-- measurement -->
584
		<div id="measurementTab">
585
			<table class="subGroup subGroup_border onehundred_percent">
586
				
587
				<tr>
588
					<th><p>a template that defines Entity, Characteristic, Standard, and/or Protocol</p></th>
589
				</tr>
590
				
591
				<tr>
592
					<td>
593
						<input type="text" id="activeMeasurementsSearch" />
594
						Only active? <input type="checkbox" id="activeMeasurementsOnly" title="Show only active concepts"/>
595
						<div class="select">
596
							<div id="activeMeasurements" class="activeTree" style="width: 100%">
597
								<p>loading...</p>
598
							</div>
599
							<input type="hidden" class="conceptValue" name="activeMeasurementsValue" id="activeMeasurementsValue" title="Measurement"/>
600
							<input type="hidden" class="conceptClass" name="activeMeasurementsClass" id="activeMeasurementsClass" value="http://ecoinformatics.org/oboe/oboe.1.0/oboe-core.owl#Measurement"/>
601
						</div>
602
					</td>
603
				</tr>
604
			</table>
605
		</div>
606
		
607
		<!-- query options -->
608
		<div id="optionsTab">
609
			<table class="group group_border">
610
				<tr>
611
					<th colspan="2">
612
						<p>
613
							Locate <b>data packages</b> that have been semantically annotated within the observation model by
614
							selecting concepts from OBOE extension ontologies
615
						</p>
616
					</th>
617
				</tr>
618
				
619
				<tr>
620
					
621
					<td colspan="1">Match All? <input type="checkbox" name="matchAll" checked="checked"/></td>
622
				
623
					<td colspan="1">From same Observation? <input type="checkbox" name="strict"/></td>
624
				</tr>
625
				
626
			</table>
627
		</div>
628

    
629
		<!-- cart -->
630
		<div id="cartTab">
631
			<!--cart here -->	
632
			<table class="subGroup subGroup_border onehundred_percent">
633
				<tr>
634
					<th>
635
						<p>
636
						Cart
637
						<!-- <input type="button" value="Refresh" onclick="loadCart()"/> -->
638
						<input type="button" value="Remove all" onclick="clearCart(); loadCart()"/>
639
						</p>
640
					</th>
641
				</tr>
642
				<tr>
643
					<td>
644
						<div id="cartResults">
645
						No items in cart
646
						</div>
647
					</td>
648
				</tr>
649
			</table>
650
		</div>
651
					
652
	</div>
653
	
654
	<br/>
655

    
656
	<!-- search results here -->	
657
	<table class="subGroup subGroup_border onehundred_percent">
658
		<tr>
659
			<th>
660
				Search Results
661
				<input type="reset" value="Clear" onclick="clearForm()"/>
662
			</th>
663
		</tr>
664
		<tr>
665
			<td>
666
				<div id="searchResults">
667
				No query has been specified	
668
				</div>
669
			</td>
670
		</tr>
671
	</table>	
672

    
673
</form>
674

    
675

    
676

    
677
<!-- Included default search/login -->
678
<% if ( PropertyService.getProperty("spatial.runSpatialOption").equals("true") ) { %>
679
<script language="javascript">
680
	insertMap("<%=CONTEXT_URL%>");
681
</script>
682
<br/>
683
<% } %>
684
  
685
<script language="javascript">
686
	insertSearchBox("<%=CONTEXT_URL%>");
687
	insertLoginBox("<%=CONTEXT_URL%>");	
688
</script>
689

    
690
</div>
691

    
692
<script language="javascript">
693
	insertTemplateClosing("<%=CONTEXT_URL%>");
694
</script>
695

    
696
</body>
697
</html>
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