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<%@ page language="java"%>
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<%@page import="edu.ucsb.nceas.metacat.util.AuthUtil"%>
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<%
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/**
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 * 
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 * '$RCSfile$'
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 * Copyright: 2008 Regents of the University of California and the
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 *             National Center for Ecological Analysis and Synthesis
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 *    '$Author: leinfelder $'
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 *      '$Date: 2011-01-07 13:00:14 -0800 (Fri, 07 Jan 2011) $'
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 * '$Revision: 5788 $'
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 * 
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 * This program is free software; you can redistribute it and/or modify
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 * it under the terms of the GNU General Public License as published by
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 * the Free Software Foundation; either version 2 of the License, or
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 * (at your option) any later version.
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 * 
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 * This program is distributed in the hope that it will be useful,
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 * but WITHOUT ANY WARRANTY; without even the implied warranty of
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 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
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 * GNU General Public License for more details.
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 * You should have received a copy of the GNU General Public License
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 * along with this program; if not, write to the Free Software
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 *  Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA  02111-1307  USA
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 */  
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%>
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<%@ include file="../../common/common-settings.jsp"%>
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<%@ include file="../../common/configure-check.jsp"%>
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<html>
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<head>
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<title>Semantic search</title>
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<link rel="stylesheet" type="text/css" href="<%=STYLE_SKINS_URL%>/semtools/semtools.css">
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<link rel="stylesheet" type="text/css" href="<%=STYLE_COMMON_URL%>/jquery/jqueryui/css/smoothness/jquery-ui-1.8.6.custom.css">
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<script language="javascript" type="text/javascript" src="<%=STYLE_COMMON_URL%>/jquery/jquery.js"></script>
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<script language="javascript" type="text/javascript" src="<%=STYLE_COMMON_URL%>/jquery/jsTree/_lib/jquery.cookie.js"></script>
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<script language="javascript" type="text/javascript" src="<%=STYLE_COMMON_URL%>/jquery/jsTree/jquery.jstree.js"></script>
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<script language="javascript" type="text/javascript" src="<%=STYLE_COMMON_URL%>/jquery/jqueryui/js/jquery-ui-1.8.6.custom.min.js"></script>
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<script language="javascript" type="text/javascript" src="<%=STYLE_COMMON_URL%>/jquery/busy/jquery.busy.js"></script>
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<script language="javascript" type="text/javascript" src="<%=STYLE_SKINS_URL%>/semtools/search.js"></script>
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<script language="javascript" type="text/javascript" src="<%=STYLE_SKINS_URL%>/semtools/semtools.js"></script>
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<script language="javascript" type="text/javascript" src="<%=STYLE_COMMON_URL%>/branding.js"></script>
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<script language="Javascript" type="text/JavaScript"><!--
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function populateActiveDomain(divId, class) {
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	// collect the filtering values we have so far
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	// these are hidden input fields in the form for holding the selected values
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	var entity = $("#activeEntitiesValue").val() ? $("#activeEntitiesValue").val() : "";
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	var characteristic = $("#activeCharacteristicsValue").val() ? $("#activeCharacteristicsValue").val() : "";
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	var protocol = $("#activeProtocolsValue").val() ? $("#activeProtocolsValue").val() : "";
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	var measurement = $("#activeMeasurementsValue").val() ? $("#activeMeasurementsValue").val() : "";
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57
	// TODO: remember the selected value for this when filtering by active domain
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	var selectedNode = $("#" + divId).jstree("get_selected", $("#" + divId));
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	var selectedNodeId = $(selectedNode).attr("id");
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	//alert(divId + " selected node: " + selectedNodeId);
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	// load the tree for the given div, passing in the other filtered values
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	$("#" + divId).load(
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		"<%=SERVLET_URL%>", 
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		{
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			'action': "getactivedomain",
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			'class': class,
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			'entity': entity,
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			'characteristic': characteristic,
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			'protocol': protocol,
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			'measurement': measurement
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		},
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		// call back function when loading finishes
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		function(response, status, xhr) {
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			//alert("callback for: " + divId + " selected node: " + selectedNodeId);
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			// error
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			if (status == "error") {
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				var msg = "Sorry but there was an error: ";
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				$("#error").html(msg + xhr.status + " " + xhr.statusText);
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			}
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			// make it a js tree
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			$(function () {
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				$("#" + divId)
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					//bind calls here
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					.jstree({
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						"ui" : {
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							"select_limit" : 1,
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							"select_multiple_modifier" : "alt",
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							"selected_parent_close" : "select_parent"//,
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							//"initially_select" : [ selectedNodeId ]
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						},
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						"themes" : {
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							"theme" : "default",
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							"dots" : true,
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							"icons" : false
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						},
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						//"core" : { "initially_open" : [ selectedNodeId ] },
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						"search" : { "case_insensitive" : true },
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						//"cookies" : { 
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						//		"save_opened" : "jstree_open_" + divId,
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						//		"save_selected" : "jstree_select_" + divId,
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						//},
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						"plugins" : [ 
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							"themes", 
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							"html_data", 
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							"ui", 
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							//"cookies", 
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							"search" ]
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					});
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			});
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			// enable searching on it
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			$("#" + divId + "Search").keyup(
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				function () {
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					var searchTerm = $("#" + divId + "Search").val();
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					if (searchTerm.length >= 3) {
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						// search
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						$("#" + divId).jstree("search", searchTerm);
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						// now prune
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						prune(divId, "jstree-search");
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						// is it an exact match?
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						checkExactMatch(divId, searchTerm, "jstree-search");
124
					}
125
				});
126
			
127
			// toggle the active domain prune
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			$("#" + divId + "Only").click(function() {
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				doActiveDomain(divId);
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			});	
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			// actually prune if we should
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			doActiveDomain(divId);
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135
			// open first node always
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			$("#" + divId).jstree("open_node", $("#" + divId).children("ul").first().children("li").first());
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138
			// open to the node to last selected
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			var nodePath = $("#" + divId).jstree("get_path", $(selectedNode));
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			if (nodePath) {
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				for (var index = 0; index < nodePath.length; index++) {
142
					$("#" + divId).jstree("open_node", $("#" + nodePath[index]));
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				}
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				// select the original node
145
				$("#" + divId).jstree("select_node", $(selectedNode), false);
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				$("#" + divId).jstree("refresh", $(selectedNode));
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				// TODO: scroll to selected node. 
148
				// This is supposed to be part of jsTree 1.0-rc2 but appears to be broken
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			}
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151
		});
152
}
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/**
154
* Prunes the given tree to inlcude the given matched class 
155
**/
156
function prune(divId, matchClass) {
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	// show all nodes (reset)
159
	$("#" + divId).find("li").show();
160
	
161
	// done if we don't have any thing to prune
162
	if (!matchClass) {
163
		return;
164
	}
165
	
166
	// get all non-matched anchor tags
167
	var nonmatches = $("#" + divId).find("a").not("." + matchClass);
168
	
169
	// get their parent nodes
170
	nonmatches = $(nonmatches).parents("li");
171

    
172
	// are there any matches under each parent node?
173
	$(nonmatches).each(
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		function(index) {
175
			// do any chidren match?
176
			var childMatches = $(this).find("a." + matchClass);
177
			if (childMatches && childMatches.length > 0) {
178
				return true;
179
			}
180
			// parent matches?
181
			var parentMatches = $(this).parents("li").children("a." + matchClass);
182
			if (parentMatches && parentMatches.length > 0) {
183
				return true;
184
			}
185
			// hide this node if no matches under it
186
			$(this).hide();
187
		});
188
}
189
function checkExactMatch(divId, searchTerm, matchClass) {
190
	// get the current search matches
191
	var matches = $("#" + divId).find("a." + matchClass);
192
	// get their parent nodes
193
	matches = $(matches).parents("li");
194
	// check for exact matches
195
	var exactMatch = $(matches).filter("#" + searchTerm).first();
196
	if (exactMatch && exactMatch.length == 1) {
197
		//alert("exactMatch: " + exactMatch);
198
		// select in the tree, honoring the configured selection limit
199
		$("#" + divId).jstree("select_node", $(exactMatch), true);
200
		// act as those you clicked it
201
		// TODO: convert to event listeners on the tree
202
		select($(exactMatch).children("a"));
203
	}
204
}
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function doActiveDomain(divId) {
206
	if ($("#" + divId + "Only").is(":checked")) {
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		// prune to active
208
		prune(divId, "bold");
209
	} else {
210
		// reset
211
		prune(divId, null);
212
	}
213
}
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function initialize(source) {
215
	// we don't want to reload the source of the filtering request
216
	// but we do want to reload the other trees for active domains
217
	// we reload all of them if no source is given - first time the page loads
218
	if (source) {
219
		source = $(source).attr("id");
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	}
221
	if (!source) {
222
		source = "";
223
	}
224
	if (source != 'activeEntities') {
225
		populateActiveDomain('activeEntities', 'org.ecoinformatics.sms.annotation.Entity');
226
	}
227
	if (source != 'activeCharacteristics') {
228
		populateActiveDomain('activeCharacteristics', 'org.ecoinformatics.sms.annotation.Characteristic');
229
	}
230
	if (source != 'activeProtocols') {
231
		populateActiveDomain('activeProtocols', 'org.ecoinformatics.sms.annotation.Protocol');
232
	}
233
	if (source != 'activeMeasurements') {
234
		populateActiveDomain('activeMeasurements', 'org.ecoinformatics.sms.annotation.Measurement');
235
	}
236
}
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function select(item) {
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239
	// get the selected value, stored in the title attribute of the item <a> tag
240
	var value = $(item).attr("title");
241
	//alert("value: " + value);
242
	
243
	// get the parent div so we know what kind of class it is meant to filter
244
	// this is "the first parent of the class 'select'"
245
	var parent = $(item).parents("div.select:first");
246
	//alert("parent: " + parent);
247
	
248
	// set the value for the hidden input value
249
	// the input field of class "conceptValue" will hold it, this way we don't need to know the id
250
	var input = $(parent).children("input.conceptValue");
251
	$(input).val(value);
252
	//alert("input: " + input);
253
	
254
	// set it in the search field
255
	var treeInstance = $(item).parents("div.jstree:first");
256
	var shortName = $(item).parent().attr("id");
257
	$("#" + $(treeInstance).attr("id") + "Search").val(shortName)
258

    
259
	// refresh the search results
260
	doSearch($("#searchForm").get(0));
261
	
262
	// refresh the other trees for active domain after this filtering action
263
	initialize($(parent).children("div"));
264
}
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function doSearch(formObj) {
266
	// set the hidden parameters based on the current state of the form
267
	checkSearch(formObj);
268
	
269
	// start the busy indicator
270
	$("#searchResults").busy(
271
			{
272
				position	: 'left', 
273
				offset		: -30, 
274
				hide		: true, 
275
				img			: "<%=STYLE_COMMON_URL%>/jquery/busy/busy.gif" 
276
			});
277
	
278
	//load the results
279
	$("#searchResults").load(
280
		"<%=SERVLET_URL%>" + " #content_wrapper",
281
		$(formObj).serialize(),
282
		// call back function when loading finishes
283
		function(response, status, xhr) {
284
			if (status == "error") {
285
				var msg = "Sorry but there was an error performing the search: ";
286
				$("#error").html(msg + xhr.status + " " + xhr.statusText);
287
			}
288
			// collapsible search results - show and hide the next div
289
			$(function() {
290
				$('#searchResults').find('.accordian').click(function() {
291
					var ref = $(this);
292
					$(this).parent().next().slideToggle(
293
						"slow",
294
						function() {
295
							if ($(ref).parent().next().is(":visible")) {
296
								$(ref).html("-");
297
							} else {
298
								$(ref).html("+");
299
							}
300
						});
301
					return false;
302
				}).parent().next().hide();
303
			});
304
			
305
			// stop the busy indicator
306
			$("#searchResults").busy("hide");
307
		});
308
		
309
	return false;
310
	
311
}
312
function loadCart() {
313

    
314
	// start the busy indicator
315
	$("#cartResults").busy(
316
		{
317
			position	: 'left', 
318
			offset		: -30, 
319
			hide		: true, 
320
			img			: "<%=STYLE_COMMON_URL%>/jquery/busy/busy.gif" 
321
		});
322
	
323
	// for looking up the cart
324
	var params = 
325
	{
326
		'action': 'getcart',
327
		'showAdd': 'false',
328
		'showRemove': 'true',
329
		'qformat': 'semtools'
330
	};
331
	//load the cart results
332
	$("#cartResults").load(
333
		"<%=SERVLET_URL%>" + " #content_wrapper",
334
		params,
335
		// call back function when loading finishes
336
		function(response, status, xhr) {
337
			if (status == "error") {
338
				var msg = "Sorry but there was an error performing the search: ";
339
				$("#error").html(msg + xhr.status + " " + xhr.statusText);
340
			}
341
			// collapsible search results - show and hide the next div
342
			$(function() {
343
				$('#cartResults').find('.accordian').click(function() {
344
					var ref = $(this);
345
					$(this).parent().next().slideToggle(
346
						"slow",
347
						function() {
348
							if ($(ref).parent().next().is(":visible")) {
349
								$(ref).html("-");
350
							} else {
351
								$(ref).html("+");
352
							}
353
						});
354
					return false;
355
				}).parent().next().hide();
356
			});
357
			
358
			// stop the busy indicator
359
			$("#cartResults").busy("hide");
360
			
361
			//set the count for the tab label
362
			var title = "Cart (" + $("#cartResults").find(".resultCount:first").html() + ")";
363
			$("#searchTabs > ul > li").last().children("a").html("<span>" + title + "</span>"); 
364
			
365
		});
366
	return true;
367
}
368
function clearCart() {
369

    
370
	// for looking up the cart
371
	var params = 
372
	{
373
		'action': 'editcart',
374
		'operation': 'clear',
375
		'qformat': 'semtools'
376
	};
377
	// post the cart clear
378
	$("#cartResults").load(
379
		"<%=SERVLET_URL%>",
380
		params,
381
		// call back function when loading finishes
382
		function(response, status, xhr) {
383
			if (status == "error") {
384
				var msg = "Sorry but there was an error clearing the cart: ";
385
				$("#error").html(msg + xhr.status + " " + xhr.statusText);
386
			}
387
		});
388
	return true;
389
}
390
function clearForm() {
391
	// clear the form values
392
	$('#searchForm').get(0).reset();
393
	// clear each of the tree selections
394
	$(".jstree").each(function(index) {
395
		$(this).jstree("deselect_all");
396
	});
397
	$("input.conceptValue").each(function(index) {
398
		$(this).val("");
399
	});
400
	// reload the trees
401
	initialize();
402
	// reload the search results
403
	//alert($('#searchForm').get(0));
404
	doSearch($('#searchForm').get(0));
405
}
406
function addCurrent() {
407

    
408
	// make a container for this item
409
	var count = $("#searchCriteria").children(".searchItem").length;
410
	count++;
411
	var containerId = "searchItem_" + count;
412
	var container = "<div class='searchItem' id='" + containerId + "'/>";
413
	$("#searchCriteria").append(container);
414
	
415
	// get the current values
416
	$("input.conceptValue").each(function(index) {
417
		var title = $(this).attr("title");
418
		var value = $(this).val();
419
		var shortName = value.substr(value.lastIndexOf("#") + 1);
420
		var clone = $(this).clone();
421
		$(clone).removeClass("conceptValue");
422
		// put the value in the container
423
		$("#" + containerId).append(clone);
424
		$("#" + containerId).append("[" + title + " = " + shortName + "] ");
425
	});
426
	// get the current classes (for search to work correctly we need class+value for each entry)
427
	$("input.conceptClass").each(function(index) {
428
		var clone = $(this).clone();
429
		$(clone).removeClass("conceptClass");
430
		// put the class in the container
431
		$("#" + containerId).append(clone);
432
	});
433
	
434
	// add the remove button
435
	$("#" + containerId).append("<input type='button' value='Remove'/>").click(function() {
436
		// remove the container (includes the form objects we added)
437
		$("#" + containerId).remove();
438
		// refresh the search results now that they are less restrictive
439
		doSearch($("#searchForm").get(0));
440
	});
441
}
442
/**
443
 * Perform this when the page first loads
444
 */
445
function pageLoad() {
446
	initialize();
447
	doSearch($('#searchForm').get(0));
448
	loadCart();
449
}
450
function donothing() {}
451
--></script>
452

    
453
</head>
454
<body onload="pageLoad()">
455
<script language="javascript">
456
	insertTemplateOpening("<%=CONTEXT_URL%>");
457
</script>
458

    
459
<div id="content_wrapper">
460
 
461
<h2>Semantic search</h2>
462

    
463
<div id="error">
464
	<!-- error messages here -->
465
</div>
466

    
467
<!-- set up the tabs -->
468
<script>
469
	$(function() {
470
		$("#searchTabs").tabs();
471
		$("#searchTabs").tabs("add", "#ecpTab", "Entity, Characteristic, Protocol");
472
		$("#searchTabs").tabs("add", "#measurementTab", "Measurement");
473
		$("#searchTabs").tabs("add", "#optionsTab", "Options");
474
		$("#searchTabs").tabs("add", "#cartTab", "Cart");
475
	});
476
</script>
477

    
478
<form method="POST" 
479
		action="<%=SERVLET_URL%>" 
480
		target="_top" 
481
		id="searchForm" 
482
		name="searchForm" 
483
		onSubmit="return doSearch(this)">
484
	<input name="query" type="hidden" />
485
	<input name="qformat" value="semtools" type="hidden" />
486
	<input name="includeHeader" value="false" type="hidden" />
487
	<input name="showAdd" value="true" type="hidden" />
488
	<input name="showRemove" value="false" type="hidden" />
489
	<input name="action" value="semquery" type="hidden" />
490

    
491
	<!-- tabs for the search interface -->		
492
	<div id="searchTabs">
493
		<!-- place holder for ui tabs -->
494
		<ul></ul>
495
	
496
		<!-- other criteria tabs -->
497
		<div id="ecpTab">
498
			<table>
499
				<tr>
500
					<td>
501
						<table class="subGroup subGroup_border">
502
							
503
							<tr>
504
								<th><p>Find observations of</p></th>
505
							</tr>
506
							<tr>
507
								<td>
508
									<input type="text" id="activeEntitiesSearch" />
509
									<input type="checkbox" id="activeEntitiesOnly" title="Show only active concepts" />
510
									<div class="select">
511
										<div id="activeEntities" class="activeTree">
512
											<p>loading...</p>
513
										</div>
514
										<input type="hidden" class="conceptValue" name="activeEntitiesValue" id="activeEntitiesValue" title="Entity"/>
515
										<input type="hidden" class="conceptClass" name="activeEntitiesClass" id="activeEntitiesClass" value="http://ecoinformatics.org/oboe/oboe.1.0/oboe-core.owl#Entity"/>
516
									</div>
517
								</td>
518
							</tr>
519
						</table>
520
					</td>
521
					<td>
522
						<table class="subGroup subGroup_border">
523
							<tr>
524
								<th><p>with measurements of</p></th>
525
							</tr>
526
							<tr>
527
								<td>
528
									<input type="text" id="activeCharacteristicsSearch" />
529
									<input type="checkbox" id="activeCharacteristicsOnly" title="Show only active concepts" />
530
									<div class="select">
531
										<div id="activeCharacteristics" class="activeTree">
532
											<p>loading...</p>
533
										</div>
534
										<input type="hidden" class="conceptValue" name="activeCharacteristicsValue" id="activeCharacteristicsValue" title="Characteristic"/>
535
										<input type="hidden" class="conceptClass" name="activeCharacteristicsClass" id="activeCharacteristicsClass" value="http://ecoinformatics.org/oboe/oboe.1.0/oboe-core.owl#Characteristic"/>
536
									</div>
537
								</td>
538
							</tr>
539
						</table>
540
					</td>
541
					<td>
542
						<table class="subGroup subGroup_border">
543
							<tr>
544
								<th><p>using procedures outlined by</p></th>
545
							</tr>
546
							<tr>
547
								<td>
548
									<input type="text" id="activeProtocolsSearch" />
549
									<input type="checkbox" id="activeProtocolsOnly" title="Show only active concepts" />
550
									<div class="select">
551
										<div id="activeProtocols" class="activeTree">
552
											<p>loading...</p>
553
										</div>
554
										<input type="hidden" class="conceptValue" name="activeProtocolsValue" id="activeProtocolsValue" title="Protocol"/>
555
										<input type="hidden" class="conceptClass" name="activeProtocolsClass" id="activeProtocolsClass" value="http://ecoinformatics.org/oboe/oboe.1.0/oboe-core.owl#Protocol"/>
556
									</div>
557
								</td>
558
							</tr>
559
						</table>
560
					</td>
561
				</tr>
562
			</table>
563

    
564
			<!-- collected search criteria here -->
565
			<table class="subGroup subGroup_border onehundred_percent">
566
				<tr>
567
					<th>
568
						<p>
569
						Search criteria
570
						<input type="button" value="Save current selection as criterion" onclick="addCurrent()"/>
571
						</p>
572
					</th>
573
				</tr>
574
				<tr>
575
					<td>
576
						<div id="searchCriteria">
577
						</div>
578
					</td>
579
				</tr>
580
			</table>
581

    
582
		</div>
583
		
584
		<!-- measurement -->
585
		<div id="measurementTab">
586
			<table class="subGroup subGroup_border onehundred_percent">
587
				
588
				<tr>
589
					<th><p>a template that defines Entity, Characteristic, Standard, and/or Protocol</p></th>
590
				</tr>
591
				
592
				<tr>
593
					<td>
594
						<input type="text" id="activeMeasurementsSearch" />
595
						Only active? <input type="checkbox" id="activeMeasurementsOnly" title="Show only active concepts"/>
596
						<div class="select">
597
							<div id="activeMeasurements" class="activeTree" style="width: 100%">
598
								<p>loading...</p>
599
							</div>
600
							<input type="hidden" class="conceptValue" name="activeMeasurementsValue" id="activeMeasurementsValue" title="Measurement"/>
601
							<input type="hidden" class="conceptClass" name="activeMeasurementsClass" id="activeMeasurementsClass" value="http://ecoinformatics.org/oboe/oboe.1.0/oboe-core.owl#Measurement"/>
602
						</div>
603
					</td>
604
				</tr>
605
			</table>
606
		</div>
607
		
608
		<!-- query options -->
609
		<div id="optionsTab">
610
			<table class="group group_border">
611
				<tr>
612
					<th colspan="2">
613
						<p>
614
							Locate <b>data packages</b> that have been semantically annotated within the observation model by
615
							selecting concepts from OBOE extension ontologies
616
						</p>
617
					</th>
618
				</tr>
619
				
620
				<tr>
621
					
622
					<td colspan="1">Match All? <input type="checkbox" name="matchAll" checked="checked"/></td>
623
				
624
					<td colspan="1">From same Observation? <input type="checkbox" name="strict"/></td>
625
				</tr>
626
				
627
			</table>
628
		</div>
629

    
630
		<!-- cart -->
631
		<div id="cartTab">
632
			<!--cart here -->	
633
			<table class="subGroup subGroup_border onehundred_percent">
634
				<tr>
635
					<th>
636
						<p>
637
						Cart 
638
						<%
639
							boolean loggedIn = AuthUtil.isUserLoggedIn(request);
640
							if (loggedIn) {
641
						%>
642
							<!-- <input type="button" value="Refresh" onclick="loadCart()"/> -->
643
							<input type="button" value="Remove all" onclick="clearCart(); loadCart()"/>
644
						<%
645
							} else {
646
						%>
647
							(<a target="_top" href="<%=STYLE_SKINS_URL%>/semtools/login.jsp">Login</a> to edit cart)
648
						<%
649
							}
650
						%>
651
						</p>
652
					</th>
653
				</tr>
654
				<tr>
655
					<td>
656
						<div id="cartResults">
657
						No items in cart
658
						</div>
659
					</td>
660
				</tr>
661
			</table>
662
		</div>
663
					
664
	</div>
665
	
666
	<br/>
667

    
668
	<!-- search results here -->	
669
	<table class="subGroup subGroup_border onehundred_percent">
670
		<tr>
671
			<th>
672
				Search Results
673
				<input type="reset" value="Clear" onclick="clearForm()"/>
674
			</th>
675
		</tr>
676
		<tr>
677
			<td>
678
				<div id="searchResults">
679
				No query has been specified	
680
				</div>
681
			</td>
682
		</tr>
683
	</table>	
684

    
685
</form>
686

    
687

    
688

    
689
<!-- Included default search/login -->
690
<% if ( PropertyService.getProperty("spatial.runSpatialOption").equals("true") ) { %>
691
<script language="javascript">
692
	insertMap("<%=CONTEXT_URL%>");
693
</script>
694
<br/>
695
<% } %>
696
  
697
<script language="javascript">
698
	insertSearchBox("<%=CONTEXT_URL%>");
699
	insertLoginBox("<%=CONTEXT_URL%>");	
700
</script>
701

    
702
</div>
703

    
704
<script language="javascript">
705
	insertTemplateClosing("<%=CONTEXT_URL%>");
706
</script>
707

    
708
</body>
709
</html>
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