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/**
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* '$RCSfile$'
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* Purpose: A Class that represents an XML node and its contents
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* Copyright: 2000 Regents of the University of California and the
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* National Center for Ecological Analysis and Synthesis
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* Authors: Matt Jones
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*
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* '$Author: leinfelder $'
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* '$Date: 2011-03-16 22:56:31 -0700 (Wed, 16 Mar 2011) $'
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* '$Revision: 6012 $'
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*
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* This program is free software; you can redistribute it and/or modify
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* it under the terms of the GNU General Public License as published by
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* the Free Software Foundation; either version 2 of the License, or
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* (at your option) any later version.
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*
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* This program is distributed in the hope that it will be useful,
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* but WITHOUT ANY WARRANTY; without even the implied warranty of
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* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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* GNU General Public License for more details.
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*
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* You should have received a copy of the GNU General Public License
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* along with this program; if not, write to the Free Software
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* Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
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*/
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package edu.ucsb.nceas.metacat;
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import java.sql.*;
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import java.text.ParseException;
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import java.text.SimpleDateFormat;
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import java.util.Date;
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import java.util.Hashtable;
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import java.util.Enumeration;
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import org.apache.log4j.Logger;
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import org.xml.sax.SAXException;
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import edu.ucsb.nceas.metacat.database.DBConnection;
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import edu.ucsb.nceas.metacat.database.DBConnectionPool;
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import edu.ucsb.nceas.metacat.database.DatabaseService;
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/**
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* A Class that represents an XML node and its contents and
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* can write its own representation to a database connection
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*/
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public class DBSAXNode extends BasicNode {
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private DBConnection connection;
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private DBSAXNode parentNode;
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private Logger logMetacat = Logger.getLogger(DBSAXNode.class);
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/**
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* Construct a new node instance for DOCUMENT nodes
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*
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* @param conn the JDBC Connection to which all information is written
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*/
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public DBSAXNode (DBConnection conn, String docid) throws SAXException {
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super();
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this.connection = conn;
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this.parentNode = null;
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writeChildNodeToDB("DOCUMENT", null, null, docid);
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updateRootNodeID(getNodeID());
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}
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/**
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* Construct a new node instance for ELEMENT nodes
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*
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* @param conn the JDBC Connection to which all information is written
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* @param tagname the name of the node
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* @param parentNode the parent node for this node being created
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*/
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public DBSAXNode (DBConnection conn, String qName, String lName,
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DBSAXNode parentNode, long rootnodeid,
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String docid, String doctype)
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throws SAXException {
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super(lName);
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this.connection = conn;
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this.parentNode = parentNode;
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setParentID(parentNode.getNodeID());
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setRootNodeID(rootnodeid);
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setDocID(docid);
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setNodeIndex(parentNode.incChildNum());
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writeChildNodeToDB("ELEMENT", qName, null, docid);
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//No writing XML Index from here. New Thread used instead.
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//updateNodeIndex(docid, doctype);
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}
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/**
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* Construct a new node instance for DTD nodes
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* This Node will write docname, publicId and systemId into db. Only
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* handle systemid existed.(external dtd)
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*
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* @param conn the JDBC Connection to which all information is written
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* @param tagname the name of the node
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* @param parentNode the parent node for this node being created
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*/
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public DBSAXNode (DBConnection conn, String docName, String publicId,
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String systemId, DBSAXNode parentNode, long rootnodeid,
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String docid) throws SAXException
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{
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super();
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this.connection = conn;
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this.parentNode = parentNode;
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setParentID(parentNode.getNodeID());
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setRootNodeID(rootnodeid);
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setDocID(docid);
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// insert dtd node only for external dtd definiation
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if (systemId != null)
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{
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//write docname to DB
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if (docName != null)
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{
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setNodeIndex(parentNode.incChildNum());
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writeDTDNodeToDB(DocumentImpl.DOCNAME, docName, docid);
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}
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//write publicId to DB
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if (publicId != null)
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{
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setNodeIndex(parentNode.incChildNum());
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writeDTDNodeToDB(DocumentImpl.PUBLICID, publicId, docid);
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}
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//write systemId to DB
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setNodeIndex(parentNode.incChildNum());
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writeDTDNodeToDB(DocumentImpl.SYSTEMID, systemId, docid);
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}
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}
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/** creates SQL code and inserts new node into DB connection */
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public long writeChildNodeToDB(String nodetype, String nodename,
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String data, String docid)
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throws SAXException {
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String limitedData = null;
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int leftover = 0;
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if (data != null) {
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leftover = data.length();
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}
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int offset = 0;
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boolean moredata = true;
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long endNodeId = -1;
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// This loop deals with the case where there are more characters
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// than can fit in a single database text field (limit is
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// MAXDATACHARS). If the text to be inserted exceeds MAXDATACHARS,
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// write a series of nodes that are MAXDATACHARS long, and then the
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// final node contains the remainder
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while (moredata) {
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if (leftover > (DBSAXHandler.MAXDATACHARS)) {
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limitedData = data.substring(offset, DBSAXHandler.MAXDATACHARS);
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leftover -= (DBSAXHandler.MAXDATACHARS - 1);
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offset += (DBSAXHandler.MAXDATACHARS - 1);
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} else {
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if (data != null) {
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limitedData = data.substring(offset, offset + leftover);
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} else {
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limitedData = null;
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}
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moredata = false;
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}
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endNodeId = writeChildNodeToDBDataLimited(nodetype, nodename, limitedData, docid);
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}
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return endNodeId;
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}
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/** creates SQL code and inserts new node into DB connection */
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public long writeChildNodeToDBDataLimited(String nodetype, String nodename,
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String data, String docid)
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throws SAXException
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{
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long nid = -1;
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try
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{
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PreparedStatement pstmt;
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Timestamp timestampData = null;
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if (nodetype == "DOCUMENT") {
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pstmt = connection.prepareStatement(
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"INSERT INTO xml_nodes " +
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"(nodetype, nodename, nodeprefix, docid) " +
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"VALUES (?, ?, ?, ?)");
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// Increase DBConnection usage count
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connection.increaseUsageCount(1);
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logMetacat.debug("DBSAXNode.writeChildNodeToDBDataLimited - inserting doc name: " + nodename);
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} else {
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if(data != null && !data.trim().equals("")
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&& !data.trim().equals("NaN") && !data.trim().equalsIgnoreCase("Infinity")){
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try{
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// try some common ISO 8601 formats
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SimpleDateFormat sdf = null;
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if (data.length() == 10) {
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sdf = new SimpleDateFormat("yyyy-MM-dd");
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} else if (data.length() == 19) {
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sdf = new SimpleDateFormat("yyyy-MM-dd'T'hh:mm:ss");
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} else {
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// throw this so we continue with parsing as numeric or string.
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throw new ParseException("String length will not match date/dateTime patterns", -1);
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}
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Date dateData = sdf.parse(data);
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timestampData = new Timestamp(dateData.getTime());
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pstmt = connection.prepareStatement(
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"INSERT INTO xml_nodes " +
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"(nodetype, nodename, nodeprefix, docid, " +
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"rootnodeid, parentnodeid, nodedata, nodeindex, nodedatadate) " +
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"VALUES (?, ?, ?, ?, ?, ?, ?, ?, ?)");
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} catch (ParseException pe) {
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try{
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double numberData = Double.parseDouble(data);
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pstmt = connection.prepareStatement(
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"INSERT INTO xml_nodes " +
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"(nodetype, nodename, nodeprefix, docid, " +
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"rootnodeid, parentnodeid, nodedata, nodeindex, nodedatanumerical) " +
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"VALUES (?, ?, ?, ?, ?, ?, ?, ?, "+ numberData +")");
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} catch (NumberFormatException nfe) {
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pstmt = connection.prepareStatement(
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"INSERT INTO xml_nodes " +
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"(nodetype, nodename, nodeprefix, docid, " +
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"rootnodeid, parentnodeid, nodedata, nodeindex) " +
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"VALUES (?, ?, ?, ?, ?, ?, ?, ?)");
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}
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}
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} else {
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pstmt = connection.prepareStatement(
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"INSERT INTO xml_nodes " +
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"(nodetype, nodename, nodeprefix, docid, " +
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"rootnodeid, parentnodeid, nodedata, nodeindex) " +
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"VALUES (?, ?, ?, ?, ?, ?, ?, ?)");
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}
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// Increase DBConnection usage count
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connection.increaseUsageCount(1);
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}
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// Bind the values to the query
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pstmt.setString(1, nodetype);
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int idx;
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if ( nodename != null && (idx = nodename.indexOf(":")) != -1 ) {
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pstmt.setString(2, nodename.substring(idx+1));
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pstmt.setString(3, nodename.substring(0,idx));
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} else {
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pstmt.setString(2, nodename);
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pstmt.setString(3, null);
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}
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pstmt.setString(4, docid);
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if (nodetype != "DOCUMENT") {
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if (nodetype == "ELEMENT") {
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pstmt.setLong(5, getRootNodeID());
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pstmt.setLong(6, getParentID());
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pstmt.setString(7, data);
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pstmt.setInt(8, getNodeIndex());
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} else {
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pstmt.setLong(5, getRootNodeID());
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pstmt.setLong(6, getNodeID());
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pstmt.setString(7, data);
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pstmt.setInt(8, incChildNum());
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}
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}
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if (timestampData != null) {
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pstmt.setTimestamp(9, timestampData);
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}
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// Do the insertion
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logMetacat.debug("DBSAXNode.writeChildNodeToDBDataLimited - SQL insert: " + pstmt.toString());
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pstmt.execute();
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pstmt.close();
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// get the generated unique id afterward
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nid = DatabaseService.getInstance().getDBAdapter().getUniqueID(connection.getConnections(), "xml_nodes");
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//should increase connection usage!!!!!!
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if (nodetype.equals("DOCUMENT")) {
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// Record the root node id that was generated from the database
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setRootNodeID(nid);
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}
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if (nodetype.equals("DOCUMENT") || nodetype.equals("ELEMENT")) {
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// Record the node id that was generated from the database
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setNodeID(nid);
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// Record the node type that was passed to the method
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setNodeType(nodetype);
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}
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} catch (SQLException sqle) {
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logMetacat.error("DBSAXNode.writeChildNodeToDBDataLimited - SQL error inserting node: " +
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"(" + nodetype + ", " + nodename + ", " + data + ") : " + sqle.getMessage());
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sqle.printStackTrace(System.err);
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throw new SAXException(sqle.getMessage());
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}
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return nid;
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}
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299
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/**
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* update rootnodeid=nodeid for 'DOCUMENT' type of nodes only
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*/
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public void updateRootNodeID(long nodeid) throws SAXException {
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try {
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PreparedStatement pstmt;
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pstmt = connection.prepareStatement(
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"UPDATE xml_nodes set rootnodeid = ? " +
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"WHERE nodeid = ?");
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// Increase DBConnection usage count
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connection.increaseUsageCount(1);
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// Bind the values to the query
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pstmt.setLong(1, nodeid);
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pstmt.setLong(2, nodeid);
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// Do the update
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pstmt.execute();
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pstmt.close();
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} catch (SQLException e) {
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System.out.println("Error in DBSaxNode.updateRootNodeID: " +
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e.getMessage());
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throw new SAXException(e.getMessage());
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}
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}
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323
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324
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/**
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325
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* creates SQL code to put nodename for the document node
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* into DB connection
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*/
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public void writeNodename(String nodename) throws SAXException {
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try {
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PreparedStatement pstmt;
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pstmt = connection.prepareStatement(
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"UPDATE xml_nodes set nodename = ? " +
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"WHERE nodeid = ?");
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// Increase DBConnection usage count
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connection.increaseUsageCount(1);
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337
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// Bind the values to the query
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pstmt.setString(1, nodename);
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pstmt.setLong(2, getNodeID());
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// Do the insertion
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pstmt.execute();
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pstmt.close();
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} catch (SQLException e) {
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344
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System.out.println("Error in DBSaxNode.writeNodeName: " +
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345
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e.getMessage());
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throw new SAXException(e.getMessage());
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347
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}
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348
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}
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349
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|
350
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/** creates SQL code and inserts new node into DB connection */
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351
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public long writeDTDNodeToDB(String nodename, String data, String docid)
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352
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throws SAXException
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353
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{
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354
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long nid = -1;
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355
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try
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356
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{
|
357
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358
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PreparedStatement pstmt;
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359
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Timestamp timestampData = null;
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360
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logMetacat.info("DBSAXNode.writeDTDNodeToDB - Insert dtd into db: "+nodename +" "+data);
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361
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if(data != null && !data.trim().equals("")){
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362
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try{
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363
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// try some common ISO 8601 formats
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364
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SimpleDateFormat sdf = null;
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365
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if (data.length() == 10) {
|
366
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sdf = new SimpleDateFormat("yyyy-MM-dd");
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367
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} else if (data.length() == 19) {
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368
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sdf = new SimpleDateFormat("yyyy-MM-dd'T'hh:mm:ss");
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369
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}
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370
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Date dateData = sdf.parse(data);
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371
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timestampData = new Timestamp(dateData.getTime());
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372
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pstmt = connection.prepareStatement(
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373
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"INSERT INTO xml_nodes " +
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374
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"(nodetype, nodename, docid, " +
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375
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"rootnodeid, parentnodeid, nodedata, nodeindex, nodedatadate) " +
|
376
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"VALUES (?, ?, ?, ?, ?, ?, ?, ?)");
|
377
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} catch (ParseException pe) {
|
378
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try{
|
379
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double numberData = Double.parseDouble(data);
|
380
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pstmt = connection.prepareStatement(
|
381
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"INSERT INTO xml_nodes " +
|
382
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"(nodetype, nodename, docid, " +
|
383
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"rootnodeid, parentnodeid, nodedata, nodeindex, nodedatanumerical) " +
|
384
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"VALUES (?, ?, ?, ?, ?, ?, ?, "+ numberData +")");
|
385
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} catch (NumberFormatException nfe) {
|
386
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pstmt = connection.prepareStatement(
|
387
|
"INSERT INTO xml_nodes " +
|
388
|
"(nodetype, nodename, docid, " +
|
389
|
"rootnodeid, parentnodeid, nodedata, nodeindex) " +
|
390
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"VALUES (?, ?, ?, ?, ?, ?, ?)");
|
391
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}
|
392
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}
|
393
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} else {
|
394
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pstmt = connection.prepareStatement(
|
395
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"INSERT INTO xml_nodes " +
|
396
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"(nodetype, nodename, docid, " +
|
397
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"rootnodeid, parentnodeid, nodedata, nodeindex) " +
|
398
|
"VALUES (?, ?, ?, ?, ?, ?, ?)");
|
399
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}
|
400
|
|
401
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// Increase DBConnection usage count
|
402
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connection.increaseUsageCount(1);
|
403
|
|
404
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// Bind the values to the query
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405
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pstmt.setString(1, DocumentImpl.DTD);
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406
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pstmt.setString(2, nodename);
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407
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pstmt.setString(3, docid);
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408
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pstmt.setLong(4, getRootNodeID());
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409
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pstmt.setLong(5, getParentID());
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410
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pstmt.setString(6, data);
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411
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pstmt.setInt(7, getNodeIndex());
|
412
|
if (timestampData != null) {
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413
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pstmt.setTimestamp(8, timestampData);
|
414
|
}
|
415
|
|
416
|
// Do the insertion
|
417
|
pstmt.execute();
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418
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pstmt.close();
|
419
|
|
420
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// get the generated unique id afterward
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421
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nid = DatabaseService.getInstance().getDBAdapter().getUniqueID(connection.getConnections(), "xml_nodes");
|
422
|
//should incease connection usage!!!!!!
|
423
|
|
424
|
} catch (SQLException e) {
|
425
|
System.out.println("Error in DBSaxNode.writeDTDNodeToDB");
|
426
|
System.err.println("Error inserting node: (" + DocumentImpl.DTD + ", " +
|
427
|
nodename + ", " +
|
428
|
data + ")" );
|
429
|
System.err.println(e.getMessage());
|
430
|
e.printStackTrace(System.err);
|
431
|
throw new SAXException(e.getMessage());
|
432
|
}
|
433
|
return nid;
|
434
|
}
|
435
|
|
436
|
|
437
|
/** get next node id from DB connection */
|
438
|
private long generateNodeID() throws SAXException {
|
439
|
long nid=0;
|
440
|
Statement stmt;
|
441
|
DBConnection dbConn = null;
|
442
|
int serialNumber = -1;
|
443
|
try {
|
444
|
// Get DBConnection
|
445
|
dbConn=DBConnectionPool.getDBConnection("DBSAXNode.generateNodeID");
|
446
|
serialNumber=dbConn.getCheckOutSerialNumber();
|
447
|
stmt = dbConn.createStatement();
|
448
|
stmt.execute("SELECT xml_nodes_id_seq.nextval FROM dual");
|
449
|
ResultSet rs = stmt.getResultSet();
|
450
|
boolean tableHasRows = rs.next();
|
451
|
if (tableHasRows) {
|
452
|
nid = rs.getLong(1);
|
453
|
}
|
454
|
stmt.close();
|
455
|
} catch (SQLException e) {
|
456
|
System.out.println("Error in DBSaxNode.generateNodeID: " +
|
457
|
e.getMessage());
|
458
|
throw new SAXException(e.getMessage());
|
459
|
}
|
460
|
finally
|
461
|
{
|
462
|
// Return DBconnection
|
463
|
DBConnectionPool.returnDBConnection(dbConn, serialNumber);
|
464
|
}//finally
|
465
|
|
466
|
return nid;
|
467
|
}
|
468
|
|
469
|
/** Add a new attribute to this node, or set its value */
|
470
|
public long setAttribute(String attName, String attValue, String docid)
|
471
|
throws SAXException
|
472
|
{
|
473
|
long nodeId = -1;
|
474
|
if (attName != null)
|
475
|
{
|
476
|
// Enter the attribute in the hash table
|
477
|
super.setAttribute(attName, attValue);
|
478
|
|
479
|
// And enter the attribute in the database
|
480
|
nodeId = writeChildNodeToDB("ATTRIBUTE", attName, attValue, docid);
|
481
|
}
|
482
|
else
|
483
|
{
|
484
|
System.err.println("Attribute name must not be null!");
|
485
|
throw new SAXException("Attribute name must not be null!");
|
486
|
}
|
487
|
return nodeId;
|
488
|
}
|
489
|
|
490
|
/** Add a namespace to this node */
|
491
|
public long setNamespace(String prefix, String uri, String docid)
|
492
|
throws SAXException
|
493
|
{
|
494
|
long nodeId = -1;
|
495
|
if (prefix != null)
|
496
|
{
|
497
|
// Enter the namespace in a hash table
|
498
|
super.setNamespace(prefix, uri);
|
499
|
// And enter the namespace in the database
|
500
|
nodeId = writeChildNodeToDB("NAMESPACE", prefix, uri, docid);
|
501
|
}
|
502
|
else
|
503
|
{
|
504
|
System.err.println("Namespace prefix must not be null!");
|
505
|
throw new SAXException("Namespace prefix must not be null!");
|
506
|
}
|
507
|
return nodeId;
|
508
|
}
|
509
|
|
510
|
|
511
|
|
512
|
/**
|
513
|
* USED FROM SEPARATE THREAD RUNNED from DBSAXHandler on endDocument()
|
514
|
* Update the node index (xml_index) for this node by generating
|
515
|
* test strings that represent all of the relative and absolute
|
516
|
* paths through the XML tree from document root to this node
|
517
|
*/
|
518
|
public void updateNodeIndex(DBConnection conn, String docid, String doctype)
|
519
|
throws SAXException
|
520
|
{
|
521
|
Hashtable pathlist = new Hashtable();
|
522
|
boolean atStartingNode = true;
|
523
|
boolean atRootDocumentNode = false;
|
524
|
DBSAXNode nodePointer = this;
|
525
|
StringBuffer currentPath = new StringBuffer();
|
526
|
int counter = 0;
|
527
|
|
528
|
// Create a Hashtable of all of the paths to reach this node
|
529
|
// including absolute paths and relative paths
|
530
|
while (!atRootDocumentNode) {
|
531
|
if (atStartingNode) {
|
532
|
currentPath.insert(0, nodePointer.getTagName());
|
533
|
pathlist.put(currentPath.toString(), new Long(getNodeID()));
|
534
|
counter++;
|
535
|
atStartingNode = false;
|
536
|
} else {
|
537
|
currentPath.insert(0, "/");
|
538
|
currentPath.insert(0, nodePointer.getTagName());
|
539
|
pathlist.put(currentPath.toString(), new Long(getNodeID()));
|
540
|
counter++;
|
541
|
}
|
542
|
|
543
|
// advance to the next parent node
|
544
|
nodePointer = nodePointer.getParentNode();
|
545
|
|
546
|
// If we're at the DOCUMENT node (root of DOM tree), add
|
547
|
// the root "/" to make the absolute path
|
548
|
if (nodePointer.getNodeType().equals("DOCUMENT")) {
|
549
|
currentPath.insert(0, "/");
|
550
|
pathlist.put(currentPath.toString(), new Long(getNodeID()));
|
551
|
counter++;
|
552
|
atRootDocumentNode = true;
|
553
|
}
|
554
|
}
|
555
|
|
556
|
try {
|
557
|
// Create an insert statement to reuse for all of the path insertions
|
558
|
PreparedStatement pstmt = conn.prepareStatement(
|
559
|
"INSERT INTO xml_index (nodeid, path, docid, doctype, " +
|
560
|
"parentnodeid) " +
|
561
|
"VALUES (?, ?, ?, ?, ?)");
|
562
|
// Increase usage count
|
563
|
conn.increaseUsageCount(1);
|
564
|
|
565
|
pstmt.setString(3, docid);
|
566
|
pstmt.setString(4, doctype);
|
567
|
pstmt.setLong(5, getParentID());
|
568
|
|
569
|
// Step through the hashtable and insert each of the path values
|
570
|
Enumeration en = pathlist.keys();
|
571
|
while (en.hasMoreElements()) {
|
572
|
String path = (String)en.nextElement();
|
573
|
Long nodeid = (Long)pathlist.get(path);
|
574
|
pstmt.setLong(1, nodeid.longValue());
|
575
|
pstmt.setString(2, path);
|
576
|
|
577
|
pstmt.executeUpdate();
|
578
|
}
|
579
|
// Close the database statement
|
580
|
pstmt.close();
|
581
|
} catch (SQLException sqe) {
|
582
|
System.err.println("SQL Exception while inserting path to index in " +
|
583
|
"DBSAXNode.updateNodeIndex for document " + docid);
|
584
|
System.err.println(sqe.getMessage());
|
585
|
throw new SAXException(sqe.getMessage());
|
586
|
}
|
587
|
}
|
588
|
|
589
|
/** get the parent of this node */
|
590
|
public DBSAXNode getParentNode() {
|
591
|
return parentNode;
|
592
|
}
|
593
|
}
|