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Revision 6187

implement object format methods - using a separate class to do the actual metacat lookup/caching so that teh CN implementation looks cleaner

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src/edu/ucsb/nceas/metacat/dataone/ObjectFormatService.java
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/**
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 *  '$RCSfile$'
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 *  Copyright: 2000 Regents of the University of California and the
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 *              National Center for Ecological Analysis and Synthesis
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 *
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 *   '$Author$'
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 *     '$Date$'
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 *
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 * This program is free software; you can redistribute it and/or modify
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 * it under the terms of the GNU General Public License as published by
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 * the Free Software Foundation; either version 2 of the License, or
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 * (at your option) any later version.
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 *
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 * This program is distributed in the hope that it will be useful,
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 * but WITHOUT ANY WARRANTY; without even the implied warranty of
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 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
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 * GNU General Public License for more details.
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 *
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 * You should have received a copy of the GNU General Public License
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 * along with this program; if not, write to the Free Software
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 * Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA  02111-1307  USA
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 */
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package edu.ucsb.nceas.metacat.dataone;
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import java.io.ByteArrayInputStream;
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import java.io.IOException;
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import java.sql.SQLException;
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import java.util.HashMap;
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import org.apache.log4j.Logger;
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import org.dataone.cn.batch.utils.TypeMarshaller;
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import org.dataone.service.exceptions.InsufficientResources;
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import org.dataone.service.exceptions.InvalidRequest;
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import org.dataone.service.exceptions.NotFound;
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import org.dataone.service.exceptions.NotImplemented;
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import org.dataone.service.exceptions.ServiceFailure;
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import org.dataone.service.types.ObjectFormat;
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import org.dataone.service.types.ObjectFormatIdentifier;
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import org.dataone.service.types.ObjectFormatList;
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import org.jibx.runtime.JiBXException;
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import edu.ucsb.nceas.metacat.DBUtil;
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import edu.ucsb.nceas.metacat.DocumentImpl;
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import edu.ucsb.nceas.metacat.McdbException;
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import edu.ucsb.nceas.metacat.properties.PropertyService;
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import edu.ucsb.nceas.utilities.PropertyNotFoundException;
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/**
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 * 
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 * Implements a subset of the DataONE CNCore services in Metacat.
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 * 
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 * @author jones, leinfelder
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 */
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public class ObjectFormatService {
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	private Logger logMetacat = Logger.getLogger(ObjectFormatService.class);
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	/* The scope of the object formats docid used as the metacat identifier */
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	private final String OBJECT_FORMAT_DOCID = "OBJECT_FORMAT_LIST.1";
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	/* The revision of the object formats document */
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	private int rev;
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	/* The separator of the object formats document */
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	private String separator = ".";
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	/* The accession number of the object formats document */
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	private String accNumber = null;
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	/* The list of object formats */
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	private ObjectFormatList objectFormatList = null;
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	/* the searchable map of object formats */
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	private static HashMap<String, ObjectFormat> objectFormatMap;
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	private static ObjectFormatService instance = null;
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	public static ObjectFormatService getInstance() {
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		if (instance == null) {
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			instance = new ObjectFormatService();
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		}
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		return instance;
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	}
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	/**
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	 * Constructor, private for singleton access
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	 */
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	private ObjectFormatService() {
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	}
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	/**
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	 * Return the object format based on the given object format identifier
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	 * 
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	 * @param fmtid
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	 *            - the object format identifier to look up
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	 * @return objectFormat - the desired object format
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	 */
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	public ObjectFormat getFormat(ObjectFormatIdentifier fmtid)
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			throws InvalidRequest, ServiceFailure, NotFound,
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			InsufficientResources, NotImplemented {
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		logMetacat.debug("CNCoreImpl.getFormat() called.");
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		ObjectFormat objectFormat = null;
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		// look up the format in the object format map
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		objectFormat = getObjectFormatMap().get(fmtid.getValue());
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		// refresh the object format list if the format is null
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		if (objectFormat == null) {
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			getCachedList();
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			objectFormat = getObjectFormatMap().get(fmtid.getValue());
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			// the object format isn't registered
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			if (objectFormat == null) {
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				throw new NotFound("4848", "The format specified by "
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						+ fmtid.getValue() + " does not exist at this node.");
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			}
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		}
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		return objectFormat;
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	}
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	/**
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	 * Return the list of object formats registered from the Coordinating Node.
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	 * 
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	 * @return objectFormatList - the list of object formats
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	 */
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	public ObjectFormatList listFormats() throws InvalidRequest,
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			ServiceFailure, NotFound, InsufficientResources, NotImplemented {
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		try {
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			objectFormatList = getCachedList();
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		} catch (ServiceFailure sfe) {
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			throw sfe;
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		} catch (NotFound nfe) {
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			throw nfe;
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		}
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		return objectFormatList;
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	}
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	/*
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	 * Return the hash containing the fmtid and format mapping
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	 * 
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	 * @return objectFormatMap - the hash of fmtid/format pairs
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	 */
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	private HashMap<String, ObjectFormat> getObjectFormatMap() {
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		if (objectFormatMap == null) {
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			objectFormatMap = new HashMap<String, ObjectFormat>();
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		}
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		return objectFormatMap;
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	}
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	/**
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	 * Get the object format list cached in Metacat
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	 */
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	private ObjectFormatList getCachedList() throws NotFound, ServiceFailure {
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		ObjectFormatList objectFormatList = null;
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		try {
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			// reset the accession number separator in case it is
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			// different than the default
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			try {
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				separator = PropertyService
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						.getProperty("document.accNumSeparator");
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			} catch (PropertyNotFoundException pnfe) {
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				// use the default separator, but log the issue
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				logMetacat.debug("There was a problem finding the document "
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						+ "separator property. The error message was: "
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						+ pnfe.getMessage());
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			}
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			// get the latest accession number if it is in Metacat
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			this.rev = DBUtil
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					.getLatestRevisionInDocumentTable(this.OBJECT_FORMAT_DOCID);
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			if (this.rev != -1) {
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				this.accNumber = this.OBJECT_FORMAT_DOCID + this.separator
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						+ this.rev;
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				DocumentImpl objectFormatsDocument = new DocumentImpl(
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						accNumber, false);
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				ByteArrayInputStream bais = new ByteArrayInputStream(
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						objectFormatsDocument.toString().getBytes());
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				// deserialize the object format list
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				try {
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					objectFormatList = TypeMarshaller.unmarshalTypeFromStream(
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							ObjectFormatList.class, bais);
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				} catch (IOException e) {
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					throw new ServiceFailure("4841",
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							"Unexpected exception from the service - "
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									+ e.getClass() + ": " + e.getMessage());
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				} catch (InstantiationException e) {
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					throw new ServiceFailure("4841",
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							"Unexpected exception from the service - "
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									+ e.getClass() + ": " + e.getMessage());
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				} catch (IllegalAccessException e) {
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					throw new ServiceFailure("4841",
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							"Unexpected exception from the service - "
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									+ e.getClass() + ": " + e.getMessage());
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				} catch (JiBXException e) {
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					throw new ServiceFailure("4841",
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							"Unexpected exception from the service - "
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									+ e.getClass() + ": " + e.getMessage());
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				}
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			} else {
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				throw new NotFound("4843",
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						"The object formats collection could not "
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								+ "be found at this node.");
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			}
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		} catch (SQLException sqle) {
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			throw new ServiceFailure("4841",
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					"Unexpected exception from the service - "
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							+ sqle.getClass() + ": " + sqle.getMessage());
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		} catch (McdbException mcdbe) {
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			throw new ServiceFailure("4841",
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					"Unexpected exception from the service - "
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							+ mcdbe.getClass() + ": " + mcdbe.getMessage());
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		}
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		// index the object format list based on the format identifier string
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		int listSize = objectFormatList.sizeObjectFormats();
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		for (int i = 0; i < listSize; i++) {
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			ObjectFormat objectFormat = objectFormatList.getObjectFormat(i);
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			String identifier = objectFormat.getFmtid().getValue();
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			getObjectFormatMap().put(identifier, objectFormat);
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		}
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		return objectFormatList;
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	}
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}
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src/edu/ucsb/nceas/metacat/dataone/CNodeService.java
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	public ObjectFormat getFormat(ObjectFormatIdentifier fmtid)
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	  throws InvalidRequest, ServiceFailure, NotFound, InsufficientResources,
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	  NotImplemented {
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		return null;
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	  	return ObjectFormatService.getInstance().getFormat(fmtid);
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	}
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	/**
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	  throws InvalidRequest, ServiceFailure, NotFound, InsufficientResources, 
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	  NotImplemented {
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		return null;
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		return ObjectFormatService.getInstance().listFormats();
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	}
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	/**

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