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/**
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* '$RCSfile$'
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* Copyright: 2000-2011 Regents of the University of California and the
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* National Center for Ecological Analysis and Synthesis
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*
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* '$Author: $'
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* '$Date: $'
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*
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* This program is free software; you can redistribute it and/or modify
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* it under the terms of the GNU General Public License as published by
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* the Free Software Foundation; either version 2 of the License, or
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* (at your option) any later version.
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*
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* This program is distributed in the hope that it will be useful,
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* but WITHOUT ANY WARRANTY; without even the implied warranty of
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* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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* GNU General Public License for more details.
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*
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* You should have received a copy of the GNU General Public License
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* along with this program; if not, write to the Free Software
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* Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
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*/
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package edu.ucsb.nceas.metacat.dataone;
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import java.io.InputStream;
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import java.util.Date;
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import org.apache.log4j.Logger;
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import org.dataone.service.cn.CNAuthorization;
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import org.dataone.service.cn.CNCore;
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import org.dataone.service.cn.CNRead;
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import org.dataone.service.cn.CNRegister;
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import org.dataone.service.cn.CNReplication;
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import org.dataone.service.exceptions.IdentifierNotUnique;
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import org.dataone.service.exceptions.InsufficientResources;
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import org.dataone.service.exceptions.InvalidRequest;
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import org.dataone.service.exceptions.InvalidSystemMetadata;
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import org.dataone.service.exceptions.InvalidToken;
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import org.dataone.service.exceptions.NotAuthorized;
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import org.dataone.service.exceptions.NotFound;
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import org.dataone.service.exceptions.NotImplemented;
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import org.dataone.service.exceptions.ServiceFailure;
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import org.dataone.service.exceptions.UnsupportedType;
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import org.dataone.service.types.Checksum;
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import org.dataone.service.types.Identifier;
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import org.dataone.service.types.Node;
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import org.dataone.service.types.NodeList;
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import org.dataone.service.types.NodeReference;
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import org.dataone.service.types.ObjectFormat;
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import org.dataone.service.types.ObjectFormatIdentifier;
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import org.dataone.service.types.ObjectFormatList;
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import org.dataone.service.types.ObjectList;
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import org.dataone.service.types.ObjectLocationList;
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import org.dataone.service.types.Permission;
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import org.dataone.service.types.QueryType;
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import org.dataone.service.types.ReplicationPolicy;
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import org.dataone.service.types.ReplicationStatus;
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import org.dataone.service.types.Session;
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import org.dataone.service.types.Subject;
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import org.dataone.service.types.SystemMetadata;
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import edu.ucsb.nceas.metacat.EventLog;
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import edu.ucsb.nceas.metacat.IdentifierManager;
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import edu.ucsb.nceas.metacat.McdbDocNotFoundException;
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import edu.ucsb.nceas.metacat.replication.ForceReplicationSystemMetadataHandler;
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/**
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* Represents Metacat's implementation of the DataONE Coordinating Node
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* service API. Methods implement the various CN* interfaces, and methods common
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* to both Member Node and Coordinating Node interfaces are found in the
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* D1NodeService super class.
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*
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*/
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public class CNodeService extends D1NodeService implements CNAuthorization,
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CNCore, CNRead, CNRegister, CNReplication {
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/* the instance of the CNodeService object */
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private static CNodeService instance = null;
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/* the logger instance */
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private Logger logMetacat = null;
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/**
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* singleton accessor
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*/
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public static CNodeService getInstance()
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{
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if (instance == null) {
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instance = new CNodeService();
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}
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return instance;
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}
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/**
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* Constructor, private for singleton access
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*/
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private CNodeService() {
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super();
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logMetacat = Logger.getLogger(CNodeService.class);
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}
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/**
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* Set the replication policy for an object given the object identifier
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*
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* @param session - the Session object containing the credentials for the Subject
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* @param pid - the object identifier for the given object
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* @param policy - the replication policy to be applied
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*
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* @return true or false
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*
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* @throws NotImplemented
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* @throws NotAuthorized
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* @throws ServiceFailure
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* @throws InvalidRequest
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*
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*/
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@Override
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public boolean setReplicationPolicy(Session session, Identifier pid,
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ReplicationPolicy policy)
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throws NotImplemented, NotFound, NotAuthorized, ServiceFailure, InvalidRequest, InvalidToken {
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// get the subject
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Subject subject = session.getSubject();
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// get the system metadata
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String guid = pid.getValue();
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// are we allowed to do this?
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if (!hasPermission(session, pid, Permission.CHANGE_PERMISSION)) {
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throw new NotAuthorized("4881", "not allowed by " + subject.getValue() + " on " + guid);
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}
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SystemMetadata systemMetadata = null;
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try {
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systemMetadata = IdentifierManager.getInstance().getSystemMetadata(guid);
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} catch (McdbDocNotFoundException e) {
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throw new NotFound("4884", "No record found for: " + guid);
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}
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// set the new policy
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systemMetadata.setReplicationPolicy(policy);
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// update the metadata
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try {
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IdentifierManager.getInstance().updateSystemMetadata(systemMetadata);
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} catch (McdbDocNotFoundException e) {
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throw new ServiceFailure("4882", e.getMessage());
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}
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return true;
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}
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/**
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* Set the replication status for an object given the object identifier
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*
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* @param session - the Session object containing the credentials for the Subject
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* @param pid - the object identifier for the given object
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* @param status - the replication status to be applied
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*
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* @return true or false
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*
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* @throws NotImplemented
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* @throws NotAuthorized
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* @throws ServiceFailure
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* @throws InvalidRequest
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* @throws InvalidToken
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* @throws NotFound
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*
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*/
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@Override
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public boolean setReplicationStatus(Session session, Identifier pid,
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ReplicationStatus status)
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throws ServiceFailure, NotImplemented, InvalidToken, NotAuthorized,
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InvalidRequest, NotFound {
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return false;
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}
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/**
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* Add capabilities to the node description
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*
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* @param session - the Session object containing the credentials for the Subject
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* @param nodeid - the node identifier for the given node be modified
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* @param node - the node information to be added
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*
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* @return true or false
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*
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* @throws NotImplemented
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* @throws NotAuthorized
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* @throws ServiceFailure
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* @throws InvalidRequest
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* @throws NotFound
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*/
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@Override
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/*public boolean updateNodeCapabilities(Session session, NodeReference nodeid, Node node) */
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public boolean addNodeCapabilities(Session session, NodeReference nodeid, Node node)
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throws NotImplemented, NotAuthorized, ServiceFailure, InvalidRequest,
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NotFound {
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return false;
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}
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/**
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* Register a Coordinating Node
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*
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* @param session - the Session object containing the credentials for the Subject
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* @param node - the node information for the given node be modified
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*
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* @return nodeid - the identifier of the node to be registered
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*
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* @throws NotImplemented
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* @throws NotAuthorized
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* @throws ServiceFailure
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* @throws InvalidRequest
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* @throws IdentifierNotUnique
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*/
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@Override
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public Identifier register(Session session, Node node)
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throws NotImplemented, NotAuthorized, ServiceFailure, InvalidRequest,
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IdentifierNotUnique {
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return null;
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}
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/**
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* Test that the specified relationship between pidOfSubject and pidOfObject exists
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*
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* @param session - the Session object containing the credentials for the Subject
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* @param node - the node information for the given node be modified
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*
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* @return true if the relationship exists
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*
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* @throws InvalidToken
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* @throws ServiceFailure
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* @throws NotAuthorized
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* @throws NotFound
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* @throws InvalidRequest
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* @throws NotImplemented
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*/
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@Override
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public boolean assertRelation(Session session, Identifier pidofsubject,
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String relationship, Identifier pidOfObject)
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throws InvalidToken, ServiceFailure, NotAuthorized, NotFound,
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InvalidRequest, NotImplemented {
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return false;
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}
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/**
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* Return the checksum of the object given the identifier
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*
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* @param session - the Session object containing the credentials for the Subject
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* @param pid - the object identifier for the given object
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*
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* @return checksum - the checksum of the object
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*
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* @throws InvalidToken
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* @throws ServiceFailure
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* @throws NotAuthorized
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* @throws NotFound
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* @throws InvalidRequest
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* @throws NotImplemented
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*/
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@Override
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public Checksum getChecksum(Session session, Identifier pid)
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throws InvalidToken, ServiceFailure, NotAuthorized, NotFound,
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InvalidRequest, NotImplemented {
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if (!isAuthorized(session, pid, Permission.READ)) {
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throw new NotAuthorized("1400", Permission.READ + " not allowed on " + pid.getValue());
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}
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SystemMetadata systemMetadata = null;
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try {
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systemMetadata = IdentifierManager.getInstance().getSystemMetadata(pid.getValue());
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} catch (McdbDocNotFoundException e) {
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throw new NotFound("1420", "No record found for: " + pid.getValue());
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}
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Checksum checksum = systemMetadata.getChecksum();
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return checksum;
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}
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/**
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* Resolve the location of a given object
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*
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* @param session - the Session object containing the credentials for the Subject
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* @param pid - the object identifier for the given object
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*
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* @return objectLocationList - the list of nodes known to contain the object
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*
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* @throws InvalidRequest
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* @throws InvalidToken
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* @throws ServiceFailure
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* @throws NotAuthorized
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* @throws NotFound
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* @throws NotImplemented
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*/
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@Override
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public ObjectLocationList resolve(Session session, Identifier pid)
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throws InvalidRequest, InvalidToken, ServiceFailure, NotAuthorized,
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NotFound, NotImplemented {
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return null;
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}
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/**
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* Search the metadata catalog for identifiers that match the criteria
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*
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* @param session - the Session object containing the credentials for the Subject
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* @param queryType - An identifier for the type of query expression
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* provided in the query
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* @param query - The criteria for matching the characteristics of the
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* metadata objects of interest
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*
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* @return objectList - the list of objects matching the criteria
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*
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* @throws InvalidToken
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* @throws ServiceFailure
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* @throws NotAuthorized
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* @throws InvalidRequest
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* @throws NotImplemented
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*/
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@Override
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public ObjectList search(Session session, QueryType queryType, String query)
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throws InvalidToken, ServiceFailure, NotAuthorized, InvalidRequest,
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NotImplemented {
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return null;
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}
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/**
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* Used internally within a Coordinating Node to add a new object
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* to the object store
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*
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* @param session - the Session object containing the credentials for the Subject
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* @param pid - The object identifier to be created
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* @param object - the object bytes
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* @param sysmeta - the system metadata that describes the object
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*
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* @return pid - the object identifier created
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*
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* @throws InvalidToken
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* @throws ServiceFailure
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* @throws NotAuthorized
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* @throws IdentifierNotUnique
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* @throws UnsupportedType
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* @throws InsufficientResources
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* @throws InvalidSystemMetadata
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* @throws NotImplemented
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* @throws InvalidRequest
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*/
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@Override
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public Identifier create(Session session, Identifier pid, InputStream object,
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SystemMetadata sysmeta)
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throws InvalidToken, ServiceFailure, NotAuthorized, IdentifierNotUnique,
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UnsupportedType, InsufficientResources, InvalidSystemMetadata,
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NotImplemented, InvalidRequest {
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return null;
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}
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/**
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* Returns the object format registered in the DataONE Object Format
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* Vocabulary for the given format identifier
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*
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* @param fmtid - the identifier of the format requested
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*
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* @return objectFormat - the object format requested
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*
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* @throws InvalidRequest
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* @throws ServiceFailure
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* @throws NotFound
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* @throws InsufficientResources
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* @throws NotImplemented
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*/
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@Override
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public ObjectFormat getFormat(ObjectFormatIdentifier fmtid)
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throws InvalidRequest, ServiceFailure, NotFound, InsufficientResources,
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NotImplemented {
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return ObjectFormatService.getInstance().getFormat(fmtid);
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}
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/**
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* Returns a list of all object formats registered in the DataONE Object
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* Format Vocabulary
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*
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* @return objectFormatList - The list of object formats registered in
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* the DataONE Object Format Vocabulary
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*
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* @throws InvalidRequest
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* @throws ServiceFailure
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* @throws NotImplemented
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* @throws NotFound
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* @throws InsufficientResources
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*/
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@Override
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public ObjectFormatList listFormats()
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throws InvalidRequest, ServiceFailure, NotFound, InsufficientResources,
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NotImplemented {
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return ObjectFormatService.getInstance().listFormats();
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}
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/**
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* Returns a list of nodes that have been registered with the DataONE infrastructure
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*
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* @return nodeList - List of nodes from the registry
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*
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* @throws ServiceFailure
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* @throws NotImplemented
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*/
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@Override
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public NodeList listNodes()
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throws NotImplemented, ServiceFailure {
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return null;
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}
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|
|
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/**
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* Provides a mechanism for adding system metadata independently of its
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* associated object, such as when adding system metadata for data objects.
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*
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* @param session - the Session object containing the credentials for the Subject
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* @param pid - The identifier of the object to register the system metadata against
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* @param sysmeta - The system metadata to be registered
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*
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* @return true if the registration succeeds
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*
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* @throws NotImplemented
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* @throws NotAuthorized
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* @throws ServiceFailure
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* @throws InvalidRequest
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* @throws InvalidSystemMetadata
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*/
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@Override
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public boolean registerSystemMetadata(Session session, Identifier guid,
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SystemMetadata sysmeta)
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throws NotImplemented, NotAuthorized, ServiceFailure, InvalidRequest,
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443
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InvalidSystemMetadata {
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444
|
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// TODO: control who can call this?
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if (session == null) {
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//TODO: many of the thrown exceptions do not use the correct error codes
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//check these against the docs and correct them
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throw new NotAuthorized("4861", "No Session - could not authorize for registration." +
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" If you are not logged in, please do so and retry the request.");
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451
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}
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452
|
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453
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// verify that guid == SystemMetadata.getIdentifier()
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logMetacat.debug("Comparing guid|sysmeta_guid: " + guid.getValue() + "|" + sysmeta.getIdentifier().getValue());
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if (!guid.getValue().equals(sysmeta.getIdentifier().getValue())) {
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456
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throw new InvalidRequest("4863",
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457
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"GUID in method call (" + guid.getValue() + ") does not match GUID in system metadata (" +
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sysmeta.getIdentifier().getValue() + ").");
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459
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}
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460
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|
461
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logMetacat.debug("Checking if identifier exists...");
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462
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// Check that the identifier does not already exist
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463
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IdentifierManager im = IdentifierManager.getInstance();
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464
|
if (im.identifierExists(guid.getValue())) {
|
465
|
throw new InvalidRequest("4863",
|
466
|
"GUID is already in use by an existing object.");
|
467
|
}
|
468
|
|
469
|
// insert the system metadata into the object store
|
470
|
logMetacat.debug("Starting to insert SystemMetadata...");
|
471
|
sysmeta.setDateSysMetadataModified(new Date());
|
472
|
try {
|
473
|
IdentifierManager.getInstance().createSystemMetadata(sysmeta);
|
474
|
IdentifierManager.getInstance().updateSystemMetadata(sysmeta);
|
475
|
// force replication of this record
|
476
|
ForceReplicationSystemMetadataHandler forceReplication =
|
477
|
new ForceReplicationSystemMetadataHandler(guid.getValue(), null);
|
478
|
} catch (Exception e) {
|
479
|
throw new ServiceFailure("4862", "Error inserting system metadata: " + e.getClass() + ": " + e.getMessage());
|
480
|
}
|
481
|
|
482
|
logMetacat.debug("Returning from registerSystemMetadata");
|
483
|
EventLog.getInstance().log(null, session.getSubject().getValue(), guid.getValue(), "registerSystemMetadata");
|
484
|
return true;
|
485
|
}
|
486
|
|
487
|
/**
|
488
|
* Given an optional scope and format, reserves and returns an identifier
|
489
|
* within that scope and format that is unique and will not be
|
490
|
* used by any other sessions.
|
491
|
*
|
492
|
* @param session - the Session object containing the credentials for the Subject
|
493
|
* @param pid - The identifier of the object to register the system metadata against
|
494
|
* @param scope - An optional string to be used to qualify the scope of
|
495
|
* the identifier namespace, which is applied differently
|
496
|
* depending on the format requested. If scope is not
|
497
|
* supplied, a default scope will be used.
|
498
|
* @param format - The optional name of the identifier format to be used,
|
499
|
* drawn from a DataONE-specific vocabulary of identifier
|
500
|
* format names, including several common syntaxes such
|
501
|
* as DOI, LSID, UUID, and LSRN, among others. If the
|
502
|
* format is not supplied by the caller, the CN service
|
503
|
* will use a default identifier format, which may change
|
504
|
* over time.
|
505
|
*
|
506
|
* @return true if the registration succeeds
|
507
|
*
|
508
|
* @throws InvalidToken
|
509
|
* @throws ServiceFailure
|
510
|
* @throws NotAuthorized
|
511
|
* @throws IdentifierNotUnique
|
512
|
* @throws NotImplemented
|
513
|
*/
|
514
|
@Override
|
515
|
public Identifier reserveIdentifier(Session session, Identifier pid,
|
516
|
String scope, String format)
|
517
|
throws InvalidToken, ServiceFailure, NotAuthorized, IdentifierNotUnique,
|
518
|
NotImplemented, InvalidRequest {
|
519
|
|
520
|
return null;
|
521
|
}
|
522
|
|
523
|
/**
|
524
|
* Changes ownership (RightsHolder) of the specified object to the
|
525
|
* subject specified by userId
|
526
|
*
|
527
|
* @param session - the Session object containing the credentials for the Subject
|
528
|
* @param pid - Identifier of the object to be modified
|
529
|
* @param userId - The subject that will be taking ownership of the specified object.
|
530
|
*
|
531
|
* @return pid - the identifier of the modified object
|
532
|
*
|
533
|
* @throws ServiceFailure
|
534
|
* @throws InvalidToken
|
535
|
* @throws NotFound
|
536
|
* @throws NotAuthorized
|
537
|
* @throws NotImplemented
|
538
|
* @throws InvalidRequest
|
539
|
*/
|
540
|
@Override
|
541
|
public Identifier setOwner(Session session, Identifier pid, Subject userId)
|
542
|
throws InvalidToken, ServiceFailure, NotFound, NotAuthorized,
|
543
|
NotImplemented, InvalidRequest {
|
544
|
|
545
|
// get the subject
|
546
|
Subject subject = session.getSubject();
|
547
|
// get the system metadata
|
548
|
String guid = pid.getValue();
|
549
|
|
550
|
// are we allowed to do this?
|
551
|
if (!hasPermission(session, pid, Permission.CHANGE_PERMISSION)) {
|
552
|
throw new NotAuthorized("4440", "not allowed by " + subject.getValue() + " on " + guid);
|
553
|
}
|
554
|
|
555
|
SystemMetadata systemMetadata = null;
|
556
|
try {
|
557
|
systemMetadata = IdentifierManager.getInstance().getSystemMetadata(guid);
|
558
|
} catch (McdbDocNotFoundException e) {
|
559
|
throw new NotFound("4460", "No record found for: " + guid);
|
560
|
}
|
561
|
|
562
|
// set the new rights holder
|
563
|
systemMetadata.setRightsHolder(userId);
|
564
|
|
565
|
// update the metadata
|
566
|
try {
|
567
|
IdentifierManager.getInstance().updateSystemMetadata(systemMetadata);
|
568
|
} catch (McdbDocNotFoundException e) {
|
569
|
throw new ServiceFailure("4490", e.getMessage());
|
570
|
}
|
571
|
|
572
|
return pid;
|
573
|
}
|
574
|
|
575
|
}
|